decb6382bd70fabfd4b9475ee305198c *ChangeLog
c390d7f6c3ca59337aa2452c1d8e67a4 *DESCRIPTION
a229152ce489a9d6803eba61a41aa350 *NAMESPACE
0695d95ade702024b64f8bd1c983e3d1 *R/annotatedTreeReader.R
e8e77ffc233de1041eaab8ac99dc4ba4 *R/auxClasses.R
1e0c8a5c898bec8525bddbfb92d602b9 *R/dna2uniqSequences.R
9f3fbb9b24292d98d1a4b2a1d33c7cb3 *R/epibase.R
ad3c044331622760d185ecb89ca9843b *R/generics.R
334d9004a6c5a205b29711e31c725a6f *R/make.phylo.R
5f5937ca2a173ab2840824e632d67802 *R/obkContacts.R
e0f2f5c290c2cb1908a6fc58b8df79d2 *R/obkData.R
ee7ebf28cd238b3041b028e69ece63d4 *R/obkData_Accessors.R
01d5f9a5b571d6371164672e70cf9f1d *R/obkData_basics.R
0d70271c70566e58791cdd0497a213d8 *R/obkSequences.R
aabb9b83decb335addf307a6bf233436 *R/phylo2ggphy.R
c2c89c1322a546c250565154a825c21b *R/plot.R
3b08521fd3a47e92187965137890ae30 *R/plotGeo.R
f4a824f682cc650069e790a44dfa7d0e *R/plotIndividualTimeline.R
afc7767bdb90bd40ccea5034822374b1 *R/plotggMST.R
ab617bda4be2efdfb209b1c396640d2b *R/plotggphy.R
3356f5c2dcc9adbc3bc96108248ffe38 *R/simuEpi.R
4db60c5b5f2d20a16363a66df2daaf95 *R/subset.R
4020804ab4d88d50b4bdfd1de5a2862a *R/uniqSequences.R
356253d7c2a408196c72ca5f3c629a5d *R/utils.R
35f0adc4c7e5a30faf15c62e7925a112 *R/zzz.R
0af218b35517df70b0dad68cf056e8f3 *data/FluH1N1pdm2009.RData
d16fc02eeaab11c064df65eb24f20e39 *data/HorseFlu.RData
4ee263297800d7320f02c90260f53cd6 *data/HorseFluRaw.RData
08158afbf493c4548c079d6f9c580c88 *data/ToyOutbreak.RData
e1ff4229c1a6f53d63a02c5477e9afe5 *data/ToyOutbreakRaw.RData
298e899758581f4daeef0e76ba3d9037 *inst/doc/epibase.R
65aeb48769597c284848a5ffd7b5e0ff *inst/doc/epibase.Rnw
7148c3c8a2e91da8da1584a77e5037cc *inst/doc/epibase.pdf
1470607bdf124ecb2a9737e6eff07ca8 *inst/files/BEAST-expl.nex
bc681bc582a6af4914584f8514ca66e2 *man/FluH1N1pdm2009.Rd
08ed6710f17a316d09800ecba73c3d90 *man/HorseFlu.Rd
31c5734472e69fb03f4ccf4af601b87f *man/HorseFluRaw.Rd
c268675d999dc92c1c6a200f7ab3d5d7 *man/ToyOutbreak.Rd
4a4924a835552a2f67db4ba358ffd9e6 *man/ToyOutbreakRaw.Rd
ac61c445d4b1833c2874a4f933233b87 *man/annotatedTreeReader.Rd
4376f26b7871b7a1d9538cd5986eae2b *man/auxClasses.Rd
fe7505c623ad4ba14e99aeee34ef39f8 *man/dna2uniqSequences.Rd
933f672d76d7bf356b30ee7099f74c5c *man/epibase.package.Rd
6a1848e12b4a2e3f1933bc92b6b0aad0 *man/get.data.Rd
ed0241a6c5b6d1d1b3473c43ebcbeb70 *man/get.dates.Rd
02abbc69eb2bd21275650f411d6cf49c *man/infectorTableToNetwork.Rd
27fb1864e173b397efc30c73e9bc8299 *man/make.phylo.Rd
e837448ce3d2f377a29522948e44f79a *man/obkContacts.Rd
6dafed1c357537915c15498353cd003a *man/obkData.Rd
3389ca3fda31ee12eaa21d32cdc20307 *man/obkDataPlot.Rd
4f453637c5fe065b3576ecf39e356555 *man/obkSequences.Rd
01caee3e5b631405ad752a7f89ef5dd0 *man/phylo2ggphy.Rd
2ab93d85684ddc463415391997840d87 *man/phylofromtranstree.Rd
d7ed6790669aef897a2b43f3f9360e38 *man/plotEpi.Rd
9cdfde61bb4d90bc6b41870fae2e48e9 *man/plotGeo.Rd
5e83f55a012b38360d02fedeecdbe0b9 *man/plotIndividualTimeline.Rd
00f2f3fccb736d66b51b6327df7e15ea *man/plotggMST.Rd
e151aa95a692bd28c5e6c8deeda83b29 *man/plotggphy.Rd
15e173cf9fc39f168da48f5ba600b579 *man/simuEpi.Rd
106782cfed346bfe5f9f7ae23e29a2bd *man/subset.Rd
2351185c150a7c2705a69705877ce8ff *man/uniqSequences.Rd
65aeb48769597c284848a5ffd7b5e0ff *vignettes/epibase.Rnw
25b03baf455d3aa711d280d9d4dd9390 *vignettes/texput.log
