293247a8103cf7a4dac25e60c85bfcf6 *DESCRIPTION
1599a43eb1f3f7a618b50e5fde8b954c *NAMESPACE
f41169f7b4e7ecf25d8893bd7e8a1601 *R/DNAseq.r
69f04aecbcb28833ee330b4f249a952b *R/aa_check.r
f7bafe4d3a723fd613a81d95a8ca28bd *R/adjust_seq.r
f1fc718c68087189cff9431faa367601 *R/consensus_seq.r
c786e33907909f1a6b63b4afcf099216 *R/debar.r
7e9a03e8140c16a5075957552d0ed0be *R/frame_seq.r
f6481111f267bed8e6195a96cb0fa6f9 *R/io.r
8b6a8c4756c941ca66951fdde505a13d *R/outseq.r
8cc9ad1c2b18100cf0196d5f4546426a *R/phmms.r
be378efc2cbeb65f6193c4b94beccbff *R/pipeline.r
89206b088e4405cdbfa3c2a3bbcddbf9 *R/print.r
b8669a0a885f431c9af0f87c8dfba106 *R/sysdata.rda
250afaab17bfd898b25ca5e4150942a6 *R/translation.r
be25c3f93ffb31313d36f9658e8d3b37 *README.md
da2d786a13e0c586023593b67ed4e4a3 *build/vignette.rds
2d9b08725fab79f8d833845068c862b4 *inst/doc/debar-algorithm-details.R
a3b2e496c14a94302b952a0d3b1fedf3 *inst/doc/debar-algorithm-details.Rmd
d182dc339a2bd92e680e2acfb8d2e5d9 *inst/doc/debar-algorithm-details.html
2a13136a25bc75beb20c04eee243a663 *inst/doc/debar-vignette.R
c20f65656df2ffac88934716025ae74e *inst/doc/debar-vignette.Rmd
a95ebbdc362216e08db36dca98bdd268 *inst/doc/debar-vignette.html
21e39c755fc57adbfed0b37781fe0726 *inst/extdata/coi_sequel_data_subset.fasta
81a186af49addf49029e5035c207e490 *inst/extdata/coi_sequel_data_subset.fastq
15e33f404f800b8441bb9919118e4ad0 *inst/extdata/coi_sequel_data_subset.fastq.gz
1923a8c35bc6f937f55936aebdc6b995 *inst/extdata/small_unittest.fasta
4bcc4829b385925acd55d3a10efe1a23 *inst/extdata/small_unittest.fastq
ae2b8f8b6ff28edd4b31533af6e8761e *man/DNAseq.Rd
2fe9d77e4dbcce41c2c9c51a458e454b *man/aa_check.Rd
7153701eaae168111c2dd58fad9c433b *man/adj_seq.Rd
01691de9a72c5b77f5efeedfaca18afb *man/adjust.Rd
c52bd6b560087fe35f2ed73536db65eb *man/censored_translation.Rd
8c8bd1011b844ce3546f61f79df3d2f9 *man/col_mode.Rd
866c75bbdb3ece5bbe0e1d5daa9685b8 *man/consensus.Rd
950a47c4dcadf1867f7148f171d2e48c *man/debar.Rd
3746bbe3ad181a46e703a644dedbfbf8 *man/denoise.Rd
9e1a418fc9078320b991dbf64d0c5edc *man/denoise_file.Rd
74ebc9d2e31686facb1a61d0acafdb22 *man/denoise_list.Rd
8d7315f72a79846e3fb338bf3af6e814 *man/dir_check.Rd
5e1c3d58c56c5b6e03dd1f51aa48247f *man/ex_nt_list.Rd
b675ee10c0e0297f12d3ce0a1e533704 *man/example_nt_string.Rd
f2c9ca37f1fb9c4cc80d3c2f98d1a5fb *man/example_nt_string_errors.Rd
603ea2fd23f43d4fce4f9b80f84a71f8 *man/frame.Rd
f69cc656ab3f9cd150fa7669e11f6e60 *man/individual_DNAbin.Rd
a9e3fdbf5d5f031f98ba5f43c147b5fa *man/ins_front_trim.Rd
e9fda49e3d9d58f2d036810fb265e74d *man/leading_ins.Rd
70cf99851eb10fa01b7b411a1dded3ea *man/meta_check.Rd
276f1e49b5358094536df2262392b399 *man/new_DNAseq.Rd
ec9a2a4e93c20ae7cf5cfd11a7fb6e9f *man/nt_PHMM.Rd
a23b5f63d3714bf4ef60d70a6fe6f191 *man/outseq.Rd
911e06ca8359e4f7c3e8fe3f007aea36 *man/print.DNAseq.Rd
f8fa3e55f9ebb7378517b7a924889a75 *man/read_fasta.Rd
0bf8d2a3db2633df974751b7ea37879f *man/read_fastq.Rd
a539e7424b438d603d0178a4ad0a293a *man/rev_comp.Rd
01e3bc8c6c4b305de779230e9df9d5fc *man/set_frame.Rd
ed6af59273bd6631ca001f1981445ee7 *man/translate_codon.Rd
be01e1601724b08ff8a1ba2045e3ffbb *man/triple_dels.Rd
16c5def75922416720e8d013bc544aac *man/triple_ins.Rd
d862ea1a440413eb2b0416d1daac7e7b *man/validate_DNAseq.Rd
72d8e1d824199827d57251579c9b0dd7 *man/write_fasta.Rd
3060b15dcc30b27e9790c8b589f9c578 *man/write_fastq.Rd
4f40964b3dcb2117d60b2c223a67bffd *man/write_wrapper.Rd
b76ccb0d5f905c9659c1c15e2051b8ac *tests/testthat.R
76858ac7305a28299d6cefe92dd8ad88 *tests/testthat/test_aa_check.r
bf7fe0086ead34f6a98aa34103e40eb1 *tests/testthat/test_adjust_seq.r
f3f3101c975a16bb3cbbbd4e2e21acc0 *tests/testthat/test_arguments.r
1ea4d63cf34a073983338d2ce7aab712 *tests/testthat/test_bad_calls.r
c8ef91fd9e895e335c03f8e8b3ed9082 *tests/testthat/test_consensus.r
f43150d0b992c0ede945b56c2e53c5c2 *tests/testthat/test_examples.r
802eeaaef39d91c898b0c8884cc54b23 *tests/testthat/test_file_to_file.r
d6a59c5ccb347e4d550cc987e78f5bc8 *tests/testthat/test_io.r
51c87136d0ed405cdfe2ac1ebd7a0aeb *tests/testthat/test_list.r
d209c047464796933814917d8e5d195e *tests/testthat/test_messy_data.r
d58479ce87f7dad60e4a05b7bec2ccc9 *tests/testthat/test_phred.r
5697fd3865d29918a699f72a868813ad *tests/testthat/test_print.r
a3b2e496c14a94302b952a0d3b1fedf3 *vignettes/debar-algorithm-details.Rmd
c20f65656df2ffac88934716025ae74e *vignettes/debar-vignette.Rmd
