aaf0fb5e73fe4a07d0e43f7f91285c37 *DESCRIPTION
0c8b71899846b1e5382987294d538385 *NAMESPACE
48fd0bee7c5faf399d8e90fd91dc20b5 *R/CAST.r
1904f3846017000960c798aec75e4dc6 *R/GRR_matrix.r
7e4f19292d39a26667d5357cbba45a17 *R/NullObject_parameters.r
1e215259e657949704e90561e48d6e56 *R/Pi_matrix.r
bdf9eaf793dd7fd99888c3351a4deffc *R/SKAT.r
201e59497e0c7762c643243dd1b33b4b *R/SKAT_NullObject.r
75a25fcb41d1b09859d6bcb51f3bf70d *R/SKAT_bootstrap.r
efdb5758f2afdf9fdaa80d04b1246da0 *R/SKAT_continuous.r
0a67be9e7d3dc997e7aad8acd3c253a6 *R/SKAT_permutations.r
fc3f37a04de8b1b74ea5f4fcac4aab25 *R/SKAT_theoretical.r
f1eb65b01064d0db1260f9089edd373c *R/WSS.r
a8b41d5ae9464bfb1a1e3d5334e2f06d *R/bed_matrix_split_genomic_region.r
ff62ebc89a9345560cb847a2c7a54170 *R/burden.r
429455bce1f7290cbff8c7a6a5ca0496 *R/burden_NullObject.r
7c224d8f3ccaa46d198905bde64687c6 *R/burden_continuous.r
5b0e1d9b3725daaef36cf8e7d339e402 *R/burden_mlogit.r
223cf3dbe12f793678c029af02edcc31 *R/burden_weighted_matrix.r
7e82f0a5a8a7a7586f62c32940eb2bae *R/filter_rare_variants.r
2c5284eef6d5bc5e6f97b711e55b61e3 *R/genotypic.freq.r
7481429965a172094a3b0e9d537c2d2c *R/get_parameters_pvalue_theoretical.r
66a985a190532d8605cc84ced8edf4f7 *R/get_rbm_thresholds.r
ba34248bc9a2d0e157af35f92de85427 *R/globals.R
a5544fa6c94f8dc03677f5c46fdfdbc0 *R/jaccard.r
18efe1f2141cadef12d8cf8877a06112 *R/matrix_products.r
c6fd697e7c7de0e11ec002b39d3cf22f *R/new_bed_matrix.r
3737f9d3e51775ec30f7c84907335447 *R/or_matrix_fix.r
389fbd89b96745fac87726fb25d3e4f7 *R/or_matrix_fix_same_variant.r
b9361ab4ef642d155b8ad54cb460487b *R/p_valeur_moments_liu.r
17faab8eea71da64c5b89de1145da1bf *R/random_bed_matrix.r
a8a05d4f166b169ab1ecf5bcb2edd0a5 *R/random_bed_matrix_freqs.r
bd6c49aa0e25ca9352b43dd4fad05b8a *R/random_bed_matrix_haplo.r
3bc924efbee26ca7982a4a2162dfbccb *R/set_genomic_region.r
6f0661dbc991062419b64f5429b0b079 *R/sum_fst.r
ad9a33e406b8b18fa75a3b14c713fa24 *TODO
67f778035a0f10a9a6af7cb9d992ab51 *build/vignette.rds
22b409117d530d9e7af3a43aa30b2688 *data/GnomADgenes.RData
17791ae871bc011907cb10f3d9fe51da *data/Kryukov.rda
00dd23ea8b50bf48e83a3dd7fc1beba8 *data/LCT.haplotypes.rda
8621f6ae992dc6b3837c67733e1f6119 *data/LCT.matrix.rda
807a00cfdd86adedc9d1749077d86d9f *data/datalist
1d76ec031d788f09e66df1ddb53585fc *data/genes.b37.RData
3168ae14549677d4c98690a739a4ca80 *data/genes.b38.RData
9a0ec09953f3bc2388c722196b67a496 *inst/doc/Ravages_Simulations_vignette.R
b2b2bfb790fd78d9cbea834e0a008308 *inst/doc/Ravages_Simulations_vignette.Rmd
af6680c2d65099a76cf1fb652487c2ce *inst/doc/Ravages_Simulations_vignette.html
2289d7c8b7d3643deb65957f5caceb6e *inst/doc/Ravages_vignette.R
b5044a08c8bc55477de3cf7522aae02c *inst/doc/Ravages_vignette.Rmd
0ebc677ffc0874695d15586894cc00f0 *inst/doc/Ravages_vignette.html
a0148b292a32aef39772d36b118ac9bc *man/CAST.Rd
428af749899a84c64cacab46d6997daf *man/GRR.matrix.Rd
b8974b7069d5ec429d26219c3be07151 *man/GnomADgenes.Rd
d45e689ad53dca08744cb73e9eaefbcc *man/Jaccard.Rd
d660c513320d9562d821256a0ae357ee *man/Kryukov.Rd
6d418e81535a3c7b6f9c57c51fba8c9c *man/LCT.haplotypes.Rd
a6380a31d4e28810abb9e49eac6e0b19 *man/LCT.matrix.Rd
a5d222327471578b3ba857205a268d5d *man/NullObject.parameters.Rd
4fbcd83579a22d772c0c9abca45446c1 *man/SKAT.Rd
707bf5dbcec4ca29eef3725465651c47 *man/SKAT.bootstrap.Rd
9afda2c2b352c6d5ecb65355d0683842 *man/SKAT.continuous.Rd
b36d6a93ad99494f984eedb94be89a23 *man/SKAT.permutations.Rd
ddf3842116deb6fc091021071d018833 *man/SKAT.theoretical.Rd
9e8bfa674837e16be03eb61b99cd7a5c *man/WSS.Rd
c6f2d90b42ebc9ccb01bcb723e279f1b *man/bed.matrix.split.genomic.region.Rd
09122cefa523d40b1d49cb0677c28284 *man/burden.Rd
a4df64e8eb320fa9de531f9e1e568b9a *man/burden.continuous.Rd
49bfcce2f336632e0e11bbee94261bea *man/burden.mlogit.Rd
eae5d669f278fabffef28afb63433d16 *man/burden.weighted.matrix.Rd
86fe9f2d5188fcf906a8e22ea10d579b *man/filter.rare.variants.Rd
426318870e095196c983d87ba758f7c1 *man/genes.positions.Rd
6acfb573f29a76ba707372bbe46e80ce *man/genotypic.freq.Rd
8159d9e05b560a6b3b482d9e3c73f762 *man/random.bed.matrix.Rd
277d6a815d29b6329b14fa9f06a3c1b1 *man/rbm.haplos.freqs.Rd
fa3b06ec92a3cf15a3a66edd32a2b80e *man/rbm.haplos.thresholds.Rd
1037716c68db6ada978d78afe570dfad *man/set.genomic.region.Rd
81beb60f26a702e7dd487477a1b6328a *src/Makevars
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars.win
866cabc91895020cdd6ef7e382a0320e *src/allelecounter.cpp
fa91d4aebf30b27a7adc7cecaf4a89b7 *src/allelecounter.h
d630639a623d4b5395b5c9c607bb8a20 *src/allelecounter2.cpp
875acda540146ad327fde3349686cadb *src/allelecounter2.h
85a8f0d653dc078401e69aa362b33152 *src/alleles_by_group.cpp
de71d24837c1840b71331e674000d5cf *src/block_diag.cpp
fb5da6185035214101f01503dbea151f *src/burden.cpp
9416560ce670cf0d82c488b2c9446166 *src/colsums.cpp
2d29f9981e98873b70d3f598cc17b56b *src/count_alternative_alleles.cpp
0002b170814ccd09c59136e30b401863 *src/itere_combinaisons.cpp
7ba1b078f78aba636e943712633e366d *src/itere_combinaisons.h
00631598beb89b3b79f73ced5813b01f *src/jaccard.cpp
9d3211bf481847409a9cebe26ecbd773 *src/label_genes.cpp
470d5f7b18fdc415a300ab874d8096da *src/label_multiple_genes.cpp
33221db4906b3e1e0adbebfac189dc09 *src/m4_stats.cpp
e3ab65750807a3131faee07560e7b47e *src/matrix4.cpp
e924ddd10d1325791e80ac4334eb3781 *src/moments.cpp
d6cb5b42930089eade1d07e54d075155 *src/polytomic_haplotype_proba.h
a6fb36654d733f0eef09183395eb45c6 *src/random_bed_matrix.cpp
38b3fb2b0f74f9161e02838ae0dddb5d *src/ravages_init.c
1daf5700d4d5817329b95d2265ac6d62 *src/rbm_haplos_freqs.cpp
481e7db3961eced6e49127ecc9b2278d *src/rbm_haplos_thresholds.cpp
ed463dbbdd3d0c2adaa4157ed9df906d *src/rbm_haplos_thresholds_filling.cpp
f6729ce16cf5df0d63ee3814752cdcd8 *src/skat.cpp
7ee3a3ccb84cb826a5fb53c1c84ce309 *src/skatBootstrap.cpp
3eae8abd1577c79e5f5df735079704a9 *src/statistics_class.h
68b1536cb2a74246126c0d72e8821f40 *src/sum_by_group.cpp
74105b5d380486b52ab8c3cf35ab9e0f *src/sum_fst.cpp
5a0fbcba6dc721f1326b4d8463747e97 *src/sum_fst1.cpp
8ab42eec1af828be038bb7a3c125e82f *src/weighted_left_product.cpp
7bbb3d3ead15164e1b449e8ff154cfe4 *src/weighted_left_product.h
b2b2bfb790fd78d9cbea834e0a008308 *vignettes/Ravages_Simulations_vignette.Rmd
b5044a08c8bc55477de3cf7522aae02c *vignettes/Ravages_vignette.Rmd
