4e3b361696e830f17aa142d72fb01dee *DESCRIPTION
c82f9831e3dfd206a6c439127911bd79 *LICENSE
fb2a8a29789eff452c59e593771a2c7a *NAMESPACE
d278b19dabc4eff32a563fbc5bff4c9c *R/HybridFinder.R
5df17c5d55a75e4a1e1e4fd0d529fd12 *R/checknetMHCpan.R
4cc5d978772ec6ffc8488720bdf12633 *R/cis_parallel.R
469d3c10dfcc518848e6e0c31ae78a2d *R/convert_cis_positions_list_into_df.R
1e2a361ac119329df510e0dbd78b12b9 *R/create_spliced_non_cis_peptides.R
8af21cf4424db73e0750b3408400c7e2 *R/create_spliced_peptides.R
a5412f9f36174f5b86288931b89203fe *R/create_tmp_directory.R
7f79af147eee14abc25e952fca07497e *R/db_Human_Liver_AUTD17.R
283a43ccbe36da4284ca140e8db64192 *R/db_rerun_Human_liver_AUTD17.R
af9a1505148c10f8a6fb91b10727810e *R/denovo_Human_Liver_AUTD17.R
23217ce76bf4d262f4ec67a097d417b5 *R/export_HybridFinder_results.R
5a733af454528df2b94ac2f6a2f67375 *R/export_checknetmhcpan_results.R
f93feb6f49d1fa551567b576b7724ffe *R/export_step2_results.R
60443d5e18c7b5b3960545124f95f52b *R/find_cis_spliced_peptides.R
69b979c25904e914ae02d025686f0e66 *R/find_cis_spliced_peptides_parallel.R
8670c9c7813a474fa2ebbfe17083cac8 *R/find_cis_start_positions.R
ad50f6353dee7d8ea8ab3b4d8f1e4897 *R/find_linear_peptides.R
45447b20685c2c41183893265318cf06 *R/find_linear_peptides_parallel.R
11f6179215b534f2746ab3695c6bfa55 *R/find_trans_spliced_peptides.R
1e9c418055b82ac7b6cfe7721c38c5ec *R/find_trans_spliced_peptides_parallel.R
c64896a3bfdd69987da3b1e36b6e769d *R/get_detailed_cis_positions.R
92a1f9c2b0874c8dd2c491739b5b2250 *R/linear_parallel.R
d8b15633fe7158f3bd1a3da5a9e53a52 *R/load_data_for_checking_examples.R
bd0f0f96d51a1c11ff0df06d88e03390 *R/make_fake_HF_proteins.R
d43074ae4a0ea086dedf73de84ff05aa *R/mhc_check.R
b3ca5aad201ef4d74525f01d670f1b25 *R/netmhcpan_call.R
240bf85fc3b57d4f3702695b64a67297 *R/peptide_rerun_cleanup.R
162600d5add72d3f1249bc71d27a783b *R/prepare_input_for_HF.R
87cb7275cf7d0e3c016b6a5076998d9e *R/read_nmhcp_file.R
2aa74887376cf8fc101b5585fa6b4519 *R/search_for_cis_spliced_peptides.R
691b4aaa7e33ee7a8048fd01a94773d2 *R/search_for_linear_peptides.R
5018d36c264e51005d1fdf156eb23bde *R/search_for_trans_spliced_peptides.R
1e9fc8f2b618561c24213dd9325265dc *R/step2_wo_netMHCpan.R
415e41d5ff142b5b2ff19bca2d9c6bed *R/sysdata.rda
3a1b6a58663403dc645b5302e4be73a9 *R/trans_parallel.R
6d5429af6e706357fce1324e8d604681 *build/vignette.rds
a53abe3061bd7de9ec919c5e53ee7b63 *data/db_Human_Liver_AUTD17.rda
082a5644b2cd4eff63ed07cadb298dd9 *data/denovo_Human_Liver_AUTD17.rda
01d56f47028206972be2922f357b6d76 *inst/doc/RHybridFinder.R
318211fd62d4386eaafc43952b716659 *inst/doc/RHybridFinder.Rmd
e65e42d672c7c72d8842ed33b867457b *inst/doc/RHybridFinder.html
5177e2346c31e129d2d65b99594136fa *man/HybridFinder.Rd
152d42df1a19b82862fa6ebc7b57cc5d *man/checknetMHCpan.Rd
04fc489bd52b045813e2d4ada7c914af *man/db_Human_Liver_AUTD17.Rd
4dc161345d7a3f7396ca1dd70f63ffe4 *man/db_rerun_Human_liver_AUTD17.Rd
2e91a35188fe05d46d4e6c6ce8510cac *man/denovo_Human_Liver_AUTD17.Rd
620ec03517a801c354e93dd00e9d927f *man/export_checknetmhcpan_results.Rd
465dade5ad48bb3641e4df77d6497f9f *man/export_results.Rd
ae0e04db107bab8a200080199fd4eb33 *man/export_step2_results.Rd
730ff32103a1330661e584aec89aff87 *man/mhc_check.Rd
f47c143e43ca04f0e9ac630fd57e4432 *man/step2_wo_netMHCpan.Rd
318211fd62d4386eaafc43952b716659 *vignettes/RHybridFinder.Rmd
