e9e30728452b3deb7c3fd3d2eb2d4e0b *DESCRIPTION
4f2389ccd4117c70700ee0506b28c4a0 *NAMESPACE
f036ed6428c1a5e1e830b3b7a22874d1 *NEWS.md
86f51b18edf6a34afddbd073670d0ce6 *R/GPAV.R
7fd99ac4bf9870facc7dc98ffc175f49 *R/HEMDAG-defunct.R
9235bd89d3b4d37fb111da2be30cd422 *R/IO.fun.R
945803af0a16d2d396bf4b3d408b2b86 *R/TPR-DAG.R
103f126abf22ba4df3077b997087932f *R/graph.utility.R
be5c7e2e788809875d3de2ec0d0bbc9c *R/heuristic.methods.R
5bf1c0c3e32f1a2328f3efbfddc5dd83 *R/htd.R
fceb4c1a086846707a739a20efa8fe63 *R/norm.fun.R
e9b08f930371af4995095a7aaf67783f *R/perf.meas.R
309dc136f7f74ca4129233e5a08cf6bf *R/pkg.attach.R
91b5763af962689a2b11b265b7777947 *R/pkg.import.R
43328fa551e8065e4d3c5da2b6e55ec0 *data/graph.rda
29f9d7a6477e2472d64779231a2c867e *data/labels.rda
b38c67e9118b338a34a4f67284fed863 *data/scores.rda
8a1a6c2671b3af583bf39bc32c10698d *data/test.index.rda
a6784be6fba1850db1a693ecd6b44e17 *data/wadj.rda
231deecd6cdc3aaf9c031bcf8e8ee443 *inst/CITATION
c0554674cfd01716515f15859971fd35 *inst/doc/HEMDAG.pdf
c37989d9385b1fff8267bd23b6606437 *inst/extdata/edges.txt.gz
55a435228950407cb06aed1a96defd28 *inst/extdata/gene2pheno.txt.gz
5d5105e3f14e98178c3586e12283d442 *inst/extdata/graph.edges.txt.gz
0d8acf2ffce1e655c47fd054eba56d8b *man/AUPRC.Rd
baa27b9ede7b7f1e5b77306b86770d31 *man/AUROC.Rd
39cd05d8982a0d76036f894ba60c632b *man/Do.GPAV.Rd
4917f6b93919dbd87395f48005e7859b *man/Do.GPAV.holdout.Rd
8649a54b05175f7c3d56de8d88ecf503 *man/Do.HTD.Rd
ac4a4b611cb9ec2fc1bc48c42e2ec0ca *man/Do.HTD.holdout.Rd
fdea4a44d1a01a833e2aaa1423a2a775 *man/Do.flat.scores.normalization.Rd
4552a0c86406fcf3dd749e82cf958ed6 *man/Do.full.annotation.matrix.Rd
185fe6ae19ccf23e308581ec62835551 *man/Do.heuristic.methods.Rd
bffc06d4a61a9dfe218a8224d10169d2 *man/Do.heuristic.methods.holdout.Rd
b015e8d5de06f81db0b5fec1be790abe *man/FMM.Rd
8adb13c4b71e0dae0522ae3bd5283e8a *man/GPAV.Rd
35c0ff8e912b1390379f1e3ace9df1cc *man/GPAV.over.examples.Rd
8d66ecd3805091f357dd2e0a8cb6d984 *man/GPAV.parallel.Rd
2c11031c899f3a6b18369acb14b5364c *man/HEMDAG-defunct.Rd
e9f13387e7ca32018ef8767475fa7674 *man/HEMDAG-package.Rd
4351a9e4a67536244ebfd00a54adc821 *man/HTD-DAG.Rd
a777be169a472c896076edad9bc93bd9 *man/Heuristic-Methods.Rd
41dde6870c55b36665b763411d252bcc *man/Multilabel.F.measure.Rd
04e64e4845f2b944bfbce033ccf9d12d *man/PXR.Rd
512881d586811b5e859c611f3d2aea66 *man/TPR-DAG-cross-validation.Rd
b1c68bdb28f5e58ce3c697f4128eb686 *man/TPR-DAG-holdout.Rd
90b5c322afa409fa0815d1029032c377 *man/TPR-DAG-variants.Rd
e34a06f43b13c88a27dd35dff3bdf5cb *man/adj.upper.tri.Rd
af34f87668ac08607cc092b54e4dab98 *man/ancestors.Rd
dfa3fd6c86ca5fcfc91244624c44ca32 *man/check.DAG.integrity.Rd
6ce05fb93b64ac877082884b4dfc98bf *man/check.annotation.matrix.integrity.Rd
08a9aa62e91a985354bfea3c1d151b7c *man/children.Rd
f3213dbdf1ff0565894636378cc83519 *man/compute.flipped.graph.Rd
cdac15f4d63925eab4d1658d584c1253 *man/constraints.matrix.Rd
6e9382de8fed1477941a7105279762d9 *man/create.stratified.fold.df.Rd
fc5307cf7e6bbbb470670432abb78e5f *man/descendants.Rd
e0a738bc30fb8f5b6dd22ee3543f32dd *man/distances.from.leaves.Rd
342ff99edca44819718a99de13867c50 *man/do.edges.from.HPO.obo.Rd
056fe25433637b35ad670a2a28c727e4 *man/do.subgraph.Rd
19946bda7c59f6b7616e3a047f973215 *man/do.submatrix.Rd
79930d34ffd9f98087157c6db4e08cec *man/do.unstratified.cv.data.Rd
e6f026e71f9ea5506dd72a42a215a59a *man/example.datasets.Rd
549a1fffd2094d192a957fa459c4455d *man/find.best.f.Rd
12636996849865bc94c66bdae8ad7d7c *man/find.leaves.Rd
9a39746dad432cecf19753d2ea6380a0 *man/full.annotation.matrix.Rd
d3bcd5da0caaeda901a29c89fdf3c26c *man/graph.levels.Rd
a06e31988baa77cde7d9abddda8d91cc *man/hierarchical.checkers.Rd
b9b524db72b7f31f0a757a19e80b4b40 *man/normalize.max.Rd
8e6581230f6ab5630eedeb80cc5533b4 *man/parents.Rd
cbead6db200f34429828080503279782 *man/read.graph.Rd
6905768282b9b3951b89a5a8d40c6a44 *man/read.undirected.graph.Rd
530050888bb31560f7d4d3a310897866 *man/root.node.Rd
7711dc329db53f2f5dda4699d737e218 *man/scores.normalization.Rd
67390fe2443467043d730aafcf0bdca7 *man/specific.annotation.list.Rd
e111ab35219e2e9e2a0080c0b7acc0d9 *man/specific.annotation.matrix.Rd
107b7dc3c9c03044d90f71b814c9233f *man/stratified.cross.validation.Rd
e578670bf744ba38ca32e19d16f1b56e *man/transitive.closure.annotations.Rd
ef8497b81bba13ab41ea5eb374171ffe *man/tupla.matrix.Rd
938b775629019bb7b5876e9df62c9706 *man/weighted.adjacency.matrix.Rd
de7edafcddf8688a99fff6b6b8f33b75 *man/write.graph.Rd
84f38b1089b93100c6d9fa61ba539f84 *src/GPAV.cpp
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars
a02ba382db6b024cb986998db299dd7a *src/registerDynamicSymbol.c
