fdad18196484d25da27945a1cbdd12e9 *DESCRIPTION
d9425718e7a49d5a5e55f20b2b14805f *NAMESPACE
6250176b9432725ca81af491704c4b2b *R/RcppExports.R
2c99bb3923c46b2d84937b60a76e1531 *R/ancestry_module.R
945687b1d78ee482d146b164138c13b3 *R/calculate_allele_frequencies.R
16b85cbc3f01d1db2db5f392563486a2 *R/calculate_frequencies.R
307a8a41ba844c1f6858c4ff6d507574 *R/calculate_fst.R
9deb94c9f884cabf5104314d85ec94f1 *R/calculate_heterozygosity.R
774915ccdf527c9b7d5c007f1dfbfb6e *R/calculate_ld.R
24fdd43981b12b5c374b100e40d4ec75 *R/calculate_marker_frequency.R
0374086d75e5b24ad855852199d1484a *R/create_input_data.R
71e9a92d732f3851972d2eb5bc65c18c *R/create_iso_female.R
713601994f25cf3b5006f72f78eb3f4d *R/create_iso_female_data.R
7ac579ba688ea5114031d0eb3e0c9985 *R/data.R
e5d54944d4b03a5ce9367b0b2e4854e1 *R/default_params_doc.R
c2d17d222664207dae55941303a545a6 *R/joyplot_frequencies.R
fba84ae4dd685544c435d979ca5a26ef *R/junctions.R
07f53e7a657a7f68a833786490490f4b *R/migration_settings.R
52b67bd537ea9f55a00700c8695e6dc7 *R/plot_chromosome.R
2e8fd451e5619b4bfb2b7496c59497e8 *R/plot_difference_frequencies.R
4ee1500b6a3ee5007b31f5e8f38d002e *R/plot_frequencies.R
61d6b2ac0eb9702772b69aa6b661bdd0 *R/plot_over_time.R
5d77736c7af2141afd659f3ab21a6b97 *R/plot_start_end.R
ef5dea24ad579515896d43e111dac04f *R/save_load.R
eeb34227d604278e4b3937bbb5729e5f *R/sequence_module.R
918b77d8c2ffcedb2645a98dd251a61b *R/simulate_admixture.R
d72578439f59428de2b7239b6bd82d81 *R/simulate_ancestry.R
55a07107dc8570a0406ff79fd392ca08 *R/simulate_ancestry_migration.R
01eceba01677d99ea8de9244447c44c4 *R/simulate_ancestry_until.R
4572811a8c069d479668439ffe4eecbc *R/simulate_sequence.R
d7017c42c8fa2f120f9968970081a67a *R/simulate_sequence_migration.R
78777209a1bb445fdd2a48f459b19d50 *R/simulate_sequence_until.R
1bb0bf5a7cc9f19de87b5de2cbe13f9e *R/utilities.R
81b421495f5f0950db73135453c386f8 *README.md
cc6f1ee4656aa0090dfd1ffbc72e7939 *build/vignette.rds
eb58c0531f57b4bbb4e5cf3c958b8896 *data/dgrp2.3R.5k.data.rda
212dfb80c125ff102eca3914e818b298 *inst/doc/Demonstrate_isofemales.R
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fdd68e2b6cf78fabc7eb03c65936580e *inst/doc/Joyplots.R
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720dec165adbf3c84d26d5aaea1f619d *inst/doc/Joyplots.html
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92afeaf7c64c7dbe31eba07313d65935 *inst/doc/Visualization.html
f809c31f4c34b86e8ce42151959fef11 *inst/doc/Walkthrough.R
f3e1d55d351fc392bc0fdcbaec0cf6e6 *inst/doc/Walkthrough.Rmd
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cd7b6d5c9b9bd9db178a8bb860ff371d *man/GenomeAdmixR-package.Rd
249698ce988dd3fefa838c3e43412100 *man/ancestry_module.Rd
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e6ab4b310bc672d470a375a3d713114e *man/calculate_average_ld.Rd
790975f96816121022a027f671db5f4f *man/calculate_dist_junctions.Rd
1b5acaffabd26ad3b8bab60e9c430dfe *man/calculate_fst.Rd
7ecf7289ef0eb3fa63ea6de3b16b91ec *man/calculate_heterozygosity.Rd
29d516effbc0bb26cfa410b396fe023b *man/calculate_ld.Rd
bd9799b5f3756bb383e4a7771c0bd56a *man/calculate_marker_frequency.Rd
1ca714d518264bce35202067e17c4aa3 *man/combine_input_data.Rd
3a72296c58d45c5f243c5499318410b1 *man/create_artificial_genomeadmixr_data.Rd
61e337bbfff2ec1ffb4c884d7db87a97 *man/create_iso_female.Rd
6f3dbebff6eeb3fd404e96263e55721a *man/default_params_doc.Rd
df040b2e23a972b4829d0abdf0c195ad *man/dgrp2.3R.5k.data.Rd
0cfc39a2703de3f188d5c35227d7edf6 *man/iso_female_ancestry.Rd
4731af25681f2657226561b31eab1190 *man/iso_female_sequence.Rd
c074d2e93a1d4742c4d06b145b2632c4 *man/load_population.Rd
38433053c39f9279c190025cb2740299 *man/migration_settings.Rd
806e0af589f78df3bd8d4140abb74d51 *man/plink_to_genomeadmixr_data.Rd
2214cfa4c87d11f2f68db5b2a0f0ea48 *man/plot.individual.Rd
09a31f2e3972603dd26c8a506e95bee9 *man/plot_chromosome.Rd
08014b02cff3b1ae8b74d7bb221af355 *man/plot_difference_frequencies.Rd
db081cf524c50d02f71c7fd8d7968340 *man/plot_dist_junctions.Rd
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cc6e24af687708d16649df07bb697ded *man/plot_joyplot_frequencies.Rd
51988aba2c9ed1af008f2b550afdc2c5 *man/plot_over_time.Rd
64d92721d2ebe661146b7ae7451b23f4 *man/plot_start_end.Rd
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283006be3732338e830ee284bdb1cf0d *man/print.individual.Rd
7639e9ed36aa37b7ec2a1d366d091ad0 *man/print.population.Rd
f23f01934f672e71e4b85538ab335d6b *man/read_input_data.Rd
d1a61fb6f6dadedc57c0f42f96a06321 *man/save_population.Rd
d30f553b5099b3a4eb6f4192c469d207 *man/sequence_module.Rd
e63d11504b673281f426c866a901d7ba *man/simulate_admixture.Rd
4ac096dcf9a64a7e26ca76694102827e *man/simulate_ancestry.Rd
9b9adde8e165413d1c200a5220918199 *man/simulate_ancestry_migration.Rd
3a5568a87de0d20b5e49849ece903527 *man/simulate_sequence.Rd
f8128f2d5dbeb404a6a2fb5c462f0590 *man/simulate_sequence_migration.Rd
922a5d22da9eed724874e5d274f34c70 *man/simulation_data_to_genomeadmixr_data.Rd
9d38a71e73d0055f01489727ac4808e3 *man/vcfR_to_genomeadmixr_data.Rd
cc1118bf24bbe6ff31caf271cbcaf331 *man/write_as_plink.Rd
e3c26b9d9b1fa25c7fa18144c50b9971 *src/Fish.cpp
a1b0269a7b4ed082b6da149414f32bda *src/Fish.h
7790ddf5243e1a27d03eea75e4f44638 *src/Fish_emp.h
03577c9ee3d41d62a4f3caa688cbdd12 *src/Makevars
809da2f5856b8740a88650aed6c45c86 *src/Makevars.win
7158e7c4681a4bf0bc00afc7fa38ba78 *src/RcppExports.cpp
3cfa3f0bf4c93d9cd92f8cd2d5f0b60e *src/helper_functions.cpp
1ab7d5cac49ac5a56d0ba92a0ce56440 *src/helper_functions.h
07ddeb72c6e1d1424a53b762404b51a2 *src/random_functions.h
50aee2b46ddaa02d0ba36a848f54f5ac *src/simulate.cpp
e737a290a9e173e4a25f247aa831b8d2 *src/simulate_emp.cpp
6f0959e5b37d5114565563edd79415a6 *src/simulate_migration.cpp
3ec7591989201528e6002c4367c68370 *src/simulate_migration_emp.cpp
d105b79b306041bf1e65c3d57569a559 *src/util.h
120850808feec7e5fe0598b14ecc083f *tests/testthat.R
ed045e0b2e6bd02c5612b1c59a69883c *tests/testthat/test-LD.R
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4993c635f1ee17596ea9f10510d6fbdd *tests/testthat/test-combined_input_data.R
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137dd001039d795504c6d4f381df6bb8 *tests/testthat/test-general_usage.R
fe792083ca11f768296d554c5b859ab4 *tests/testthat/test-isoFemales.R
3979a1a115c6a68617d1f078927b2d50 *tests/testthat/test-joyplot.R
6aa42b2091866a40a6e9d5cdde0f70c9 *tests/testthat/test-junctions.R
5e82938cbed0d7210d0549eefc419a52 *tests/testthat/test-plink.R
24e817e35184b77b4dc4ed336f25a8e9 *tests/testthat/test-save_load.R
98e129858e7806e38d7cbaf7e516b09f *tests/testthat/test-selection.R
12d292ddada7361c50585738cbc3b0ea *tests/testthat/test-simulate_admixture.R
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1de4fd498d626252b3944da8e22ed99b *tests/testthat/test-simulate_admixture_migration_data.R
bcc074c610c52ce31c9b8ad11939c8f8 *tests/testthat/test-simulate_admixture_until.R
62f3ff435d205833828ba158dc92be40 *tests/testthat/test-simulate_migration.R
f9e6dd8a6157ee8061530fe73105a7e5 *tests/testthat/test-utilities.R
f5715360a7672bf002436ec1fc65ab76 *vignettes/Demonstrate_isofemales.Rmd
609ee2c49acbfe9a2d82e8206f000491 *vignettes/Empirical_data.Rmd
d69c802701a121b5cde3c23f5df4663c *vignettes/Joyplots.Rmd
d5d9506b768eb6652aa1f7fa3ed7792d *vignettes/Visualization.Rmd
f3e1d55d351fc392bc0fdcbaec0cf6e6 *vignettes/Walkthrough.Rmd
