6b9c8ee42758e706fb13516e8e0a1cb2 *DESCRIPTION
4e35c6771dfb9662ea0fce7a5e0a8278 *NAMESPACE
ee3ed0c5118e0b3f74b3412194e3d29e *NEWS.md
d1d399eefed87168e8572eb43fe03013 *R/DiscrepancyPrior-IndLTPrior-class.R
1ffd21f147e22f880e73aa85306e8de0 *R/DiscrepancyPrior-IndSTPrior-class.R
dc0d0fbf31eefa3a798e54f36ad8749f *R/DiscrepancyPrior-ShaSTPrior-class.R
d9d4cf0a096df592452afa783d5bda91 *R/DiscrepancyPrior-TruthPrior-class.R
4eccced4af553ff5ab834a192be0b338 *R/EcoEnsemble-package.R
4e91a9f32f8901a726ce314dd3fcba62 *R/EnsembleData-class.R
a3dcd32b273ef0bbb5d13acf739c0d79 *R/EnsembleFit-class.R
296b1f0d9263201f826af05c852a351c *R/EnsemblePrior-class.R
c4e95cdc8f4cfed22b18d22ddd842134 *R/EnsembleSample-class.R
df84773ea27f63ac7138bc1c99159939 *R/Prior_sampling.R
34b39076ce97ecf51cb3461894ca7e7f *R/RcppExports.R
84e70633d93fef7a35bb5f93384bbc85 *R/data.R
3f081aaa402869c4d440186a00146c57 *R/fit_ensemble.R
3e660362a7246159da7821147ffa4fd1 *R/generate_simulator_stan_data.R
27c7deafca4ad80406de998005ac253c *R/get_stan_outputs.R
a20a66516e6b5e5ab5d06d7b83b2fd3a *R/plot_functions.R
ba6532c2494b8aa5fe91f546093f31ac *R/prior_functions.R
d951bbdb257166b5b1ed3cc7ce18d1b4 *R/stanmodels.R
4666e6d57a9179cf63dd1b26fa296c50 *R/validation_functions.R
57f59e7a5d4613adb4a6aeb17a63df3f *R/validation_prior_functions.R
3ae4ddf08761969fdeb1be0e4caa0c80 *README.md
a85f0be2da6a8477e6fec691375a976f *build/vignette.rds
1cc60bdd8610449d30184e0bb374bf46 *configure
363506993327ae3b7de4216fa3a1aa2b *configure.win
c669264ca6728aeb7158c095ebac44d8 *data/northseamsy.RData
c2185a74da7f4e44bdf9e72247d9db88 *inst/doc/EcoEnsemble.R
2f834927966a41a7e0c90a0e5eab8191 *inst/doc/EcoEnsemble.Rmd
f554343455cc909d2a300b73ac97c2b9 *inst/doc/EcoEnsemble.html
350f3a7c64bb7b1632d21b314597c7e5 *inst/doc/ExploringPriors.R
01929692912999929ff74c6fcf69b4ff *inst/doc/ExploringPriors.Rmd
a2cf7a49f9483d0c2dabacfba80b8751 *inst/doc/ExploringPriors.html
a5748ef942d88806f4d83ab4e6a368d8 *inst/doc/SyntheticData.R
6e878c2dc98bf296bfd895144d864c02 *inst/doc/SyntheticData.Rmd
ef735a8cac837bcd15d48efe3950d0dd *inst/doc/SyntheticData.html
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
1f4fba8ee8d89c454fb5b35b535e20fb *inst/stan/ensemble_model.stan
994474fc73f294a9ecb540d546415284 *inst/stan/ensemble_model_hierarchical.stan
112889238c729c6390929969abd95fa5 *inst/stan/ensemble_prior.stan
88cd4f5e28afb1734cf792ab5034edf4 *inst/stan/ensemble_prior_hierarchical.stan
d18e7d40ef78518ae3bdc34f38d401b4 *inst/stan/include/license.stan
b7dc8e2a2edb182bf5f60f9c3e77dc13 *man/EcoEnsemble-package.Rd
0b16fedde750d5426badb7996d7f36d2 *man/EnsembleData-class.Rd
548d3216999c1eb1761f4f7e6a407c71 *man/EnsembleData.Rd
70136d9e1da1c2fdff61d3ddcceb8840 *man/EnsembleFit-class.Rd
590516349e2fb2314ce3f2a0945df819 *man/EnsembleFit.Rd
61231f9c4bf29288bd031eab183668cb *man/EnsemblePrior-class.Rd
4ad1dbf105f8c981f6aa63ae44bdc792 *man/EnsembleSample-class.Rd
14411b5f703533365aeeaff23ad74b5b *man/EnsembleSample.Rd
ffa5133196093a3c2be81c26d32dcbcc *man/IndLTPrior-class.Rd
f6155a663efc0d9d3f288eb6b60490f0 *man/IndSTPrior-class.Rd
219a9d5836e1b4883ed5dd4faf9bf609 *man/PriorConstructorFunctions.Rd
39114545077c2a01c6fa7536b468dbb3 *man/SSB_ewe.Rd
38f53f9116df101e70f64d2019afdefb *man/SSB_fs.Rd
def2705dbeda51b8a555b0731680a090 *man/SSB_lm.Rd
d33ce94bcb2451e01855a23b7533130c *man/SSB_miz.Rd
3a3aa710e387f70d8a886b756280b47c *man/SSB_obs.Rd
654cd3f5e9302cff14fe008cd3cf7934 *man/ShaSTPrior-class.Rd
a9542e16240a9ee82b26477d59232b72 *man/Sigma_ewe.Rd
d1bea1a3f84cb2ad481f4a43cd47da1d *man/Sigma_fs.Rd
432d0445b73bf795d8687add706d1d5a *man/Sigma_lm.Rd
005c830d7192e6ee29696925ef4ba5ce *man/Sigma_miz.Rd
2f46f45a0f145c57a3aaec6235bf109e *man/Sigma_obs.Rd
adca0a5dda31e00be8b478a1577bf1a9 *man/TruthPrior-class.Rd
fcdc12f3664cd0b55a4f184f5eb9606a *man/figures/fitted_model.bmp
2ddcee5a5ee04e9d08316ab0db37c4bf *man/fit_ensemble_model.Rd
e357a9b02f9ecb228be324d8f2ebe531 *man/get_mcmc_ensemble_model.Rd
28cc9bb3e4e5e52b1ef8381ce8f2a764 *man/get_stan_outputs.Rd
ff570268a340a6cc3335e86f3fe53ac1 *man/plot.EnsembleSample.Rd
0494ec646f707ef716fe151e8a7f1fbf *man/prior_ensemble_model.Rd
740df43cb361738e87b0d1af20e66183 *man/sample_prior.Rd
3307e230521183cea1304ed2a7a4ef01 *src/EcoEnsemble_types.h
cbf5889af2b45914d3fb2a527523856d *src/KF_back.cpp
206a1183386165c922ae6dd37d7378e0 *src/Makevars
66d6aef607935be5ead2bd71ebf6e98f *src/Makevars.win
23d56fa1bf0407a969e938163bd01e9c *src/RcppExports.cpp
8dad48df0514296413dfd1a0dde55b7b *src/stanExports_ensemble_model.cc
6f12a907f1069bdf43a1272950db9d27 *src/stanExports_ensemble_model.h
80d689cb3d53d7f79e9f70204b40f1d7 *src/stanExports_ensemble_model_hierarchical.cc
62a5a771749dfd34b60265144b0cb489 *src/stanExports_ensemble_model_hierarchical.h
ef4b87f1a6c93b3b75e2ce5182303418 *src/stanExports_ensemble_prior.cc
c1ca2c70188131a74a95c8a34911a9e6 *src/stanExports_ensemble_prior.h
c49f62b1be41f6f0d75aece0254d2dce *src/stanExports_ensemble_prior_hierarchical.cc
f36eb98f87051312de0af6d5db3981b4 *src/stanExports_ensemble_prior_hierarchical.h
f8a1eaf1e47577f0ecef4cc32f429956 *tests/testthat.R
7955f482f4c48ba97a2fbc47c9005b7c *tests/testthat/test-prior_functions.R
4f5b430f3e0c4c305e5321bed92540b6 *tests/testthat/test-validation_functions.R
2f834927966a41a7e0c90a0e5eab8191 *vignettes/EcoEnsemble.Rmd
01929692912999929ff74c6fcf69b4ff *vignettes/ExploringPriors.Rmd
6e878c2dc98bf296bfd895144d864c02 *vignettes/SyntheticData.Rmd
eb3f6738790966c70902afe59b4d918b *vignettes/data/ExploringPriors_HierBetaDensities.RData
f1df7c80ee3aaa5db7c236123d08cd28 *vignettes/data/ExploringPriors_HierGammaDensities.RData
00bc7873e0205b65296f9ee1b71489f2 *vignettes/data/ExploringPriors_PriorPredictivePlot.RData
e82339d246a521a99b384e775527ad69 *vignettes/data/ExploringPriors_invWishartDensities.RData
15f31f137cf4b8ad8a260d40321c2da7 *vignettes/data/SyntheticData_AddingModelsData.RData
4fb28c0eb23d75308c9addae7336d1b6 *vignettes/data/SyntheticData_Plots.RData
a66ae781627d8852516d74d10747b300 *vignettes/data/SyntheticData_PriorSamples.RData
0f75db50da6a9245086eeb1bb03c9595 *vignettes/data/vignette_plots.Rdata
