1af4ad5dad6b5d1280c668a65713c8aa *DESCRIPTION
9c5d7f589558cbf46bf6b21aedf276be *NAMESPACE
a7324c1e5c6e6a835945e3ef6b028980 *R/Corbi-package.R
6c98b067f74e2db665656e943d05502a *R/deg_rationet.R
1e11ee2ed1457d20beace5963386ca6f *R/deg_simulation.R
dd7c393d645b28fb5dd5ae8cab821465 *R/markrank.R
04d9b251740daba6ed1872d31afa4382 *R/multihyper.R
0f057dc5131c87a5353002cc3d54a64c *R/net_align.R
cb0418287a4ea8c0fd842dec32bdf193 *R/net_functions.R
41ebb3ec428446ee19530398e782ef47 *R/net_query.R
563b193b507f7488c3398ff177525d3f *R/net_query_batch.R
16023207c8e9ff3da6306d22c9fa0ede *R/pro_align.R
43ee2375f1e5c43ef91fe1f2f816639b *R/subnets.R
01da9b2e428958b95007353935685ffa *R/utils.R
245be8c8f8fef2c267698c0c4e0a470c *README.md
dcb251c1ae19a26977be123bf2f31ee7 *build/vignette.rds
50c5f68e198256b4d7e2de74e128c785 *inst/doc/MarkRank.R
674747c619c079e69f06d3be10155d8c *inst/doc/MarkRank.Rmd
dedfafbf9c718520b0b03498d084ba61 *inst/doc/MarkRank.pdf
3025482f5193eb615e04151f4436ce67 *man/Corbi-package.Rd
0ca05217cfd5864dc49fc2fba56e0605 *man/best_subnets.Rd
cd67b12ef6442c445ce3af67c2ca8a1e *man/column.Rd
f2f11a82bb6d614e4b452edd3c2689d9 *man/extend_subnets.Rd
9a41f182825129aafa0b9e62293f426c *man/get_adjusted_deg_diff.Rd
0f59eb63c42dbb6b93e74b8a562d25de *man/get_diff_ratio_net.Rd
c8d4fe025ec23ae4fb41f35b7e5c9af9 *man/get_ratio_distribution.Rd
cda7d7902fdcd80a0885634d4568c4c2 *man/get_ratio_distribution2.Rd
a015813db8e4b2b62750f177a380843b *man/get_shortest_distances.Rd
e478b2a5855e9b4d7d1594e05f989fe7 *man/get_subnets.Rd
b3869e0ffa691157e18e321435810819 *man/kappa_score.Rd
55ade45e853c9ea2d1368522c47ed435 *man/make_DEG_data.Rd
ab68dd6ac2595003c341d17a49a8fe5f *man/make_DEG_data2.Rd
71a41b598e2cb54649e64776e613aa17 *man/make_DEG_pattern.Rd
84aa409b44f8356797dd2d1ec55761f7 *man/markrank.Rd
022ac096bce8c7f4ba6d442ce5e7b655 *man/netDEG.Rd
55df0ab3adc11b62e0e48fdf2b2d38ee *man/netDEG_pvalue.Rd
bab61a74fa8c12cb5c9168a6ddfe7472 *man/net_align.Rd
fbeb51d00f203296b2f06eea84e5c3ae *man/net_query.Rd
c362e96f471eef92ebf75ff779913604 *man/nnzero.Rd
ddf2d6fe05f4932aa91ef802537076b3 *man/p_combine.Rd
cb1c985116d4b75cead53ea59cf4136d *man/pmultihyper.Rd
546bdf08a22fa510f8030607a0d524ce *man/pmultinom.Rd
b6011ddf482de17bef6d88a9a291035c *man/read_net.Rd
91157dc78f57baa7665f7b306aebb241 *man/rmultihyper.Rd
38b23bf06bcbd06412602066d9a84bef *man/simulate_dropout.Rd
ea719dc36b19f1c96ca69170049d08f9 *man/simulate_sample_groups.Rd
c02bd3a53d4e861026771520d368046a *man/submatrix.Rd
e485664bb652d7e55cbcc1fb4e0600c3 *man/write_net.Rd
7dbe9bf21f3e7fc5a61a976c287944d9 *src/Corbi.cpp
bf9cfe60907376d4a73aa9a8023c2368 *src/Corbi.h
93410ca49e62268a739349e687f94d32 *src/NetDEG.cpp
5e366483217ac19f7f83be7259e11947 *src/NetQuery.cpp
699c0fedbdcc71a18571d6d4e6fdd4c5 *src/ProAlign.cpp
303ba16516eaf42ab1e550ff09ac8131 *src/Subnets.cpp
102a2f5f2e40c1776208b133a47a8a9d *src/misc.h
aebe2d7116c462a32b6ebb0e97a25450 *src/multihyper.cpp
274a4d7f67b4033046348975552c726f *src/quantile.cpp
10070270e9aa5d7fbb5aeaaddd026bd3 *src/quantile.h
83edbccc90560e5f481b6f5fe9392b14 *src/utils.cpp
880e32107ee394f3c925f2b669e1e969 *src/utils.h
a68790d0e4cc5bc1a926838c6083b7ba *tests/net_align/answer1.txt
d9602b4a2d7de3f59abee92de27c042e *tests/net_align/answer1_uni.txt
13f6765b3012f560e7a8e484d9b6e7f6 *tests/net_align/net1.txt
c524a16c37d360c70e54b23dc960bf6e *tests/net_align/net2.txt
bb60a7e7d33e3e21793b660d14ef4ca5 *tests/net_align/net3.txt
bdef3c60888a8fc861d9bff90076f5c9 *tests/net_align/sim.txt
c2041e817482e9d528b2015d750c5b80 *tests/net_query/answer1.txt
c155d694a1b4cbdfed8e21a7f371741a *tests/net_query/answer2.txt
13f6765b3012f560e7a8e484d9b6e7f6 *tests/net_query/query1.txt
c524a16c37d360c70e54b23dc960bf6e *tests/net_query/query2.txt
bdef3c60888a8fc861d9bff90076f5c9 *tests/net_query/sim.txt
bb60a7e7d33e3e21793b660d14ef4ca5 *tests/net_query/target.txt
a7cdc25003b2cecab7ce242892a0faf9 *tests/test_net_align.R
07cfe4f3f449b059f31a0c890910a2fb *tests/test_net_query.R
674747c619c079e69f06d3be10155d8c *vignettes/MarkRank.Rmd
e75659576664791dcc2c0cac9e6b9f3a *vignettes/network.txt
7c39044270a4f07e1d7d944c2097b88f *vignettes/search_net.R
