citHeader("To cite serrsBayes in publications use:")

bibentry(bibtype = "Manual",
         title        = "{serrsBayes}: {B}ayesian Modelling of {R}aman Spectroscopy",
         author       = c(person(c("Matthew","T."),"Moores"),
                          person("Jake", "Carson"),
                          person("Benjamin","Moskowitz"),
                          person("Kirsten","Gracie"),
                          person("Karen", "Faulds"),
                          person("Mark", "Girolami")),
         year         = "2020",
         doi          = "10.5281/zenodo.3861862",
         url          = "https://CRAN.R-project.org/package=serrsBayes",

         textVersion  =
           paste("Moores MT, Carson J, Moskowitz B, Gracie K, Faulds K & Girolami M (2020).",
                 "serrsBayes: Bayesian Modelling of Raman Spectroscopy.",
                 "R package version 0.4-1",
                 "URL: https://CRAN.R-project.org/package=serrsBayes")
)

bibentry(bibtype = "InCollection",
         key          = "Moores2016raman",
         header       = "The Bayesian model and SMC algorithm were first introduced in:",
         title        = "Bayesian modelling and quantification of {R}aman spectroscopy",
         author       = c(person("Matthew", "Moores"),
                          person("Kirsten", "Gracie"),
                          person("Jake", "Carson"),
                          person("Karen", "Faulds"),
                          person("Duncan", "Graham"),
                          person("Mark", "Girolami")),
         editor       = c(person(c("D.","R."), "Wood"),
                          person(c("A.","M."), "Etheridge"),
                          person("J.", "de Gier"),
                          person("N.", "Joshi")),
         booktitle    = "2025 {MATRIX} annals. {P}art {II}",
         series       = "MATRIX Book Ser.",
         volume       = "10",
         pages        = "417--428",
         publisher    = "Springer",
         address      = "Cham, Switzerland",
         year         = "2026",
         doi          = "10.48550/arXiv.1604.07299",
         url          = "https://www.matrix-inst.org.au/wp_Matrix2016/wp-content/uploads/2025/2025_Pathiraja/MOORES.pdf",

         textVersion  =
           paste("Matthew Moores, Kirsten Gracie, Jake Carson, Karen Faulds, Duncan Graham & Mark Girolami (2026).",
                 "Bayesian modelling and quantification of Raman spectroscopy.",
                 "In D.R. Wood, A.M. Etheridge, J. de Gier & N. Joshi (eds.)",
                 "2025 MATRIX Annals, Part II. MATRIX Book Ser. 10, pp. 417-428.",
                 "Springer, Cham, Switzerland. DOI: 10.48550/arXiv.1604.07299",
                 "URL https://www.matrix-inst.org.au/wp_Matrix2016/wp-content/uploads/2025/2025_Pathiraja/MOORES.pdf")
)

bibentry(bibtype = "Article",
         header       = "The TAMRA+DNA spectrum in the lsTamra dataset was published in:",
         title        = "Preferential attachment of specific fluorescent dyes and dye labeled {DNA} sequences in a surface enhanced {R}aman scattering multiplex",
         author       = c(person("Kirsten", "Gracie"),
                          person("Matthew", "Moores"),
                          person(c("W.","Ewen"), "Smith"),
                          person("Kerry", "Harding"),
                          person("Mark", "Girolami"),
                          person("Duncan", "Graham"),
                          person("Karen", "Faulds")),
         journal      = "Analytical Chemistry",
         year         = "2016",
         volume       = "88",
         number       = "2",
         pages        = "1147--1153",
         doi          = "10.1021/acs.analchem.5b02776",

         textVersion  =
           paste("Gracie K, Moores M, Smith WE, Harding K, Girolami M, Graham D & Faulds K (2016).",
                 "Preferential attachment of specific fluorescent dyes and dye labeled DNA sequences",
                 "in a surface enhanced Raman scattering multiplex.",
                 "Analytical Chemistry 88(2): 1147-1153. DOI: 10.1021/acs.analchem.5b02776")
)

bibentry(bibtype = "Misc",
         header       = "The dataset is available under a CC BY 4.0 licence from:",
         title        = "Preferential attachment of specific fluorescent dyes and dye labelled {DNA} sequences in a {SERS} multiplex",
         author       = person("Kirsten", "Gracie"),
         year         = "2015",
         publisher    = "University of Strathclyde",
         note         = "Dataset",
         doi          = "10.15129/2c186689-2334-4746-955e-f9579ca15909",

         textVersion  =
           paste("Gracie K (2015).",
                 "Preferential attachment of specific fluorescent dyes and dye labelled DNA sequences in a SERS multiplex",
                 "[Dataset]. University of Strathclyde. DOI: 10.15129/2c186689-2334-4746-955e-f9579ca15909")
)

bibentry(bibtype = "Article",
         header = "An extension of the model for CARS spectroscopy:",
         title        = "Bayesian quantification for coherent anti-{S}tokes {R}aman scattering spectroscopy",
         author       = c(person("Teemu","H{\"a}rk{\"o}nen"),
                          person("Lassi","Roininen"),
                          person(c("Matthew","T."),"Moores"),
                          person(c("Erik","M."),"Vartiainen")),
         journal      = "arXiv preprint",
         year         = "2020",
         url          = "https://arxiv.org/abs/2005.06830",

         textVersion  =
           paste("Harkonen T, Roininen L, Moores MT & Vartiainen EM (2020).",
                 "Bayesian quantification for coherent anti-Stokes Raman scattering spectroscopy.",
                 "arXiv preprint arXiv:2005.06830 [stat.AP]",
                 "URL https://arxiv.org/abs/2005.06830")
)
