citHeader("To cite the 'RZooRoH' package and its model in publications, please use:")

bibentry(
  bibtype = "Article",
  author  = c(person("Natalia S.", "Forneris"), person("Pierre", "Faux"),
              person("Mathieu", "Gautier"), person("Tom", "Druet")),
  title   = "Updating the RZooRoH Package for the Analysis of Inbreeding, Identity-By-Descent and Relatedness From Genomic Data.",
  journal = "Molecular Ecology Resources",
  year    = 2026,
  volume  = 26,
  number  = 6,
  pages   = "e70186",
  doi     = "10.1111/1755-0998.70186",
  textVersion = "N.S. Forneris, P. Faux, M. Gautier and T. Druet (2026). Updating the RZooRoH Package for the Analysis of Inbreeding, Identity-By-Descent and Relatedness From Genomic Data. Molecular Ecology Resources, 26(6):e70186. doi:10.1111/1755-0998.70186"
)

bibentry(
  bibtype = "Article",
  author  = c(person("Tom", "Druet"), person("Mathieu", "Gautier")),
  title   = "A hidden Markov model to estimate homozygous-by-descent probabilities associated with nested layers of ancestors.",
  journal = "Theoretical Population Biology",
  year    = 2022,
  volume  = 145,
  pages   = "38-51",
  doi     = "10.1016/j.tpb.2022.03.001",
  textVersion = "T. Druet and M. Gautier (2022). A hidden Markov model to estimate homozygous-by-descent probabilities associated with nested layers of ancestors. Theor Popul Biol, 145:38-51. doi:10.1016/j.tpb.2022.03.001"
)

bibentry(
  bibtype = "Article",
  header  = "The ZooRoH model and its properties were first described in:",
  author  = c(person("Tom", "Druet"), person("Mathieu", "Gautier")),
  title   = "A model-based approach to characterize individual inbreeding at both global and local genomic scales.",
  journal = "Molecular Ecology",
  year    = 2017,
  volume  = 26,
  number  = 20,
  pages   = "5820-5841",
  doi     = "10.1111/mec.14324",
  textVersion = "T. Druet and M. Gautier (2017). A model-based approach to characterize individual inbreeding at both global and local genomic scales. Molecular Ecology, 26:5820-5841. doi:10.1111/mec.14324"
)

bibentry(
  bibtype = "Article",
  header  = "Extension to IBD and kinship analyses were first introduced in (see the RZooRoH update paper above for further details):",
  author  = c(person("Natalia Soledad", "Forneris"), person("Mirte", "Bosse"),
              person("Mathieu", "Gautier"), person("Tom", "Druet")),
  title   = "Genomic Prediction of Individual Inbreeding Levels for the Management of Genetic Diversity in Populations With Small Effective Size.",
  journal = "Molecular Ecology Resources",
  year    = 2025,
  volume  = 25,
  number  = 4,
  pages   = "e14068",
  doi     = "10.1111/1755-0998.14068",
  textVersion = "N.S. Forneris, M. Bosse, M. Gautier and T. Druet (2025). Genomic Prediction of Individual Inbreeding Levels for the Management of Genetic Diversity in Populations With Small Effective Size. Molecular Ecology Resources, 25(4):e14068. doi:10.1111/1755-0998.14068"
)

bibentry(
  bibtype = "Article",
  header  = "The previous RZooRoH package (prior to version 4) is described in:",
  author  = c(person("Amandine", "Bertrand"), person("Naveen", "Kadri"),
              person("Laurence", "Flori"), person("Mathieu", "Gautier"), person("Tom", "Druet")),
  title   = "RZooRoH: an R package to characterize individual genomic autozygosity and identify homozygous-by-descent segments.",
  journal = "Methods in Ecology and Evolution",
  year    = 2019,
  volume  = 10,
  number  = 6,
  pages   = "860-866",
  doi     = "10.1111/2041-210X.13167",
  textVersion = "A.R. Bertrand, N.K. Kadri, L. Flori, M. Gautier and T. Druet (2019). RZooRoH: an R package to characterize individual genomic autozygosity and identify homozygous-by-descent segments. Methods in Ecology and Evolution, 10(6):860-866. doi:10.1111/2041-210X.13167"
)





