7f8900caf5895ed514829e40af1171d0 *DESCRIPTION
1d528443031199bb20143bd3863f370b *NAMESPACE
c1fa52a2a97ebe0007d2eca1dce37a39 *NEWS.md
b4fe858eb3d9b8a1e20d0f99f46bbb66 *R/RZooRoH-package.R
6f6800925e7d7e04b2cdc02be192cfe8 *R/data.R
bea39fbafe0bef0f2b01111677b020d3 *R/lib_kl.R
d6d8d7fd9d7dd35ebe26c1581a765c90 *R/lib_mixkl.R
2561eb0d41eab86c2581f4f70ddb9c13 *R/param_function.R
1510b601cd81b8844f754b9c5a52ab65 *R/prob_emission.R
4509502210464d2cbf28729bee60206e *R/read_zdata.R
95dd16da834e2da172a1ad50cbeab093 *R/zookin.R
034dccca9e0482f9ca1ec7f047f197db *R/zookin_accessor.R
a92017dec9ff53544e5945f3700fce82 *R/zooplot_segments.R
757b8e933501ab90419db8854a6c0e52 *R/zooroh.R
c439e54b14a45201a02fcde857527b30 *R/zooroh_accessor.R
e7e19a0d53ae35f199a6d56495bb79dc *R/zooroh_model.R
c2b671a5f60c578a50887e04a5ae954a *R/zplot_individual.R
359aa97ba9eef170fedfd800f8fa0ba4 *R/zplot_prophbd.R
7c5ef511c49387050f2add7a6665aa21 *R/zplot_vertical.R
67cb48337d5b713316146be9b6c72e8c *build/vignette.rds
d4da291bc18ea28292daf78aea66b39d *data/BBB_NMP_GP_subset.RData
a558e5b3d0fd40d0a3a58cf469da5ef4 *data/BBB_NMP_ad_subset.RData
3120d1696f9d568980628a6613017614 *data/BBB_NMP_pl_subset.RData
572c1dce386660f1bac783cb23f97e19 *data/BBB_PE_gt_subset.RData
65dc644ae028f73581b8bec8183a3d43 *data/BBB_samples.RData
431e596b7742cba9c3f99d3e7a1d4b0a *data/Local_IBD.RData
ab830e019a0241fb3e60b4c91b9c5c1b *data/genoex.RData
e93167884ca009be5f480853737601a9 *data/genosim.RData
b2d8c67abde767b054d0ecbc2d938e70 *data/kintaf_mix4l.RData
f71b4fc832bf5502f4ee615f5d50b0ef *data/rara_mix10l.RData
ef4a15d1d73ba2d22e2148cb223c693e *data/soay_mix10l.RData
e630101b3e0d7bce671e3b2c02ca347f *data/typs.RData
204566d4f41c08f08caee17a3ae1c252 *data/typsfrq.RData
22c724b61a82d7c003b4a84cffaafda5 *data/wilt_mix10l.RData
f0d05f7b354dc6dcd3ab1e595c379baa *inst/CITATION
299fe02de03f5a79ee90bf33ee2a0d9e *inst/doc/zooroh-vignette.R
a15ac361d75c929f7dc96e74d19a1ef0 *inst/doc/zooroh-vignette.Rmd
80f7e3d2540e772bf0361a70b52abc19 *inst/doc/zooroh-vignette.pdf
ccf009f88ff00893e8e96bf8c00bdb95 *inst/exdata/BBB_NMP_GP_subset.txt
f7195865d31b2aa3ba16ae5c4eb42512 *inst/exdata/BBB_NMP_ad_subset.txt
66278d9dd795a9cccbd587b63399e145 *inst/exdata/BBB_NMP_pl_subset.txt
f7195865d31b2aa3ba16ae5c4eb42512 *inst/exdata/BBB_NMP_subset.txt
0d0520f44a42528f100ccfeb8d96aa29 *inst/exdata/BBB_PE_gt_subset.txt
06b48d5426a08c546912b2c545efaeae *inst/exdata/BBB_samples.txt
7d19b2d3423cd6a774af56836e6b6d01 *inst/exdata/Ref22_EX.haps
52919ba1396fc53e6cd40706f8c17009 *inst/exdata/TAF_phased_ex.vcf
71eabd71fe1530e4a977459c1aca09c7 *inst/exdata/genoex.txt
a2d3e27f68fff30a4551f433fcba6e6e *inst/exdata/genosim.txt
3df4e09e7b68b5bb6af181e6f9971c8c *inst/exdata/typs.txt
769d7033220f3dd9304ebdba176b9230 *inst/exdata/typsfrq.txt
b8fb89a7d0734f7ca96eac0936e627f5 *man/BBB_NMP_GP_subset.Rd
63d280996615bdd0b500a3fb84c48475 *man/BBB_NMP_ad_subset.Rd
47e7ceeacf217668bb9ae8451b4a290e *man/BBB_NMP_pl_subset.Rd
3f43dfb9158e38174857b829027af898 *man/BBB_PE_gt_subset.Rd
2b14aba00aca9ba92587d1de13a252eb *man/BBB_samples.Rd
6e98c9cca69ddaa274e15a32cdafd704 *man/ComputeFseg.Rd
3d04b19158ce0c8abc9472a74f83bb22 *man/ComputeFsegAllT.Rd
254217c917fe0dbd45286f4f1dcef625 *man/RZooRoH-package.Rd
e5c0de1e3444c63eccaf35f803e54e4e *man/cumhbd.Rd
34a48ba98b3764d422ef4aeae47f5a29 *man/cumkin.Rd
ee34844ecff230cc193f45eafc885e53 *man/genoex.Rd
e794096f525335b67523386d7a71830d *man/genosim.Rd
a34429fbde37cd78fe4344399a81c1a1 *man/hbd1.Rd
416880f7f28226fed918f8c6be77add2 *man/hbd2.Rd
1d714f9e57a9b196c6e1c1d2c70e65ec *man/kintaf_mix4l.Rd
de3d3c576922528cf4403e5cf811b8e1 *man/map1.Rd
7cd445d6375fd09535ffe72354fbdd66 *man/merge_kinres.Rd
99b615c1db5894b375b73ec513e55a34 *man/merge_zres.Rd
6f9213dc3e5ba1dfb1a301f22eac0d16 *man/predhbd.Rd
7acec0103b772fde14cf1a85f8b82363 *man/probhbd.Rd
2268a3381452bf19df013242703ceba6 *man/rara_mix10l.Rd
e6314be1af9b342ab2ee2dfe2332758f *man/realized.Rd
920b2ded17ebebd6041ffa50cd7349cc *man/rohbd.Rd
81077c830f2d87d046333e21e200027d *man/soay_mix10l.Rd
000031cdf0e83f431e70a0ce42277dde *man/typs.Rd
87323473b7d7394e68eb20250488d801 *man/typsfrq.Rd
00345487989ebecf4bc39b00830b0519 *man/update_kinres.Rd
6c365b4c22d3a8711d821e5ed7d370c2 *man/update_zres.Rd
0d7cf11c954a5e5f66076eb31fce934c *man/wilt_mix10l.Rd
1af2afba683caef209683a05835a5733 *man/zoodata.Rd
8252743fe82c0f2d3bc6274f19a541fb *man/zookin.Rd
185598eaefb5f553932035647e11f1ee *man/zoomodel.Rd
790b42d4222da958bf16e37d432f38aa *man/zooplot_hbdseg.Rd
6e9eabe7d1246cccbf65e1afe0212e76 *man/zooplot_individuals.Rd
07f4910fe4f1cc3748806a0ac054d18b *man/zooplot_partitioning.Rd
b48c961e03c1ec827b140bc72db1e642 *man/zooplot_prophbd.Rd
c8e9935e5e1e76b7ac7fa4c02ad3dbf0 *man/zoorun.Rd
7128043f50f87f2575e4b9a88b882671 *src/Freqem_AD.f90
bdf14903fa041bbd26ce263dbc8aa701 *src/Freqem_GP.f90
2099a6bd54de851672db590b8c886c09 *src/Freqem_PL.f90
6365bf5bc765949445e83d80e097f54c *src/RZooRoH_init.c
0a0a14f9452624417a0cf848c191216e *src/getfreq.c
661aa22f48a728985f9fddfc657d7321 *src/getfreqem.c
741a5911e9bc6b24537475d9d9a1630b *src/malloc_trim.c
d849f45aa8dda54e9db4e0c666a9d0ce *src/set_na_to_zero_inplace.c
52111b83a6d77d4f743124d235865df2 *src/zoolayerFB.f90
c0ccaaea87979c2cfaa853d507e6d8c1 *src/zoolayerViterbi.f90
c8433f03ae9a0524fc43f38e3bde6b92 *src/zoolayerlik.f90
115013ccf898fccf7956a7f5a24800eb *src/zoosumlayerFB.f90
bb72f13f30b73b4b747237844d1a64e6 *src/zoosumlayerFB2.f90
aae3d284ad24f7745a60268332c97170 *src/zoosumlayerViterbi.f90
4022ee870570292ef020bea1aad51227 *src/zoosumlayerViterbi2.f90
585f9bf0c77ccc7a45b254f2c17d2db7 *src/zoosumlayerlik.f90
932596aa25266432ebb58e0a08267e48 *src/zoosumlayerlik2.f90
f85cef421d1b6ec23f1fbec47b6da94d *tests/testthat.R
91a8459ec8629a7ecc4d2b9c9ce8e1f8 *tests/testthat/test1.R
e61ae047255fa859bd0edc3f4efe86c0 *tests/testthat/test2.R
a4ecb925465606ccd29a04acc8583b3a *vignettes/BBB_hdbseg_densities.pdf
fb0694195e0028174593abd0082d3738 *vignettes/Effect_density_error_lowfoldII.pdf
fe4426d9d3a076635d24adec1b00cb83 *vignettes/Fig4hb_barplot_filteredRR.pdf
c62142aa5777b16e16db048b52a228a9 *vignettes/Figure1.pdf
396e46384cc2424cf4fd1e722d860214 *vignettes/Figure2.pdf
59123240a52c74bf180f354c080a38f0 *vignettes/biomed-central.csl
2ee8a5e250b5e4a1693aa412cfe57bd5 *vignettes/genetics.csl
3eec2bd7b084b4a016a2637ee21e55cf *vignettes/rzoo.bib
a15ac361d75c929f7dc96e74d19a1ef0 *vignettes/zooroh-vignette.Rmd
