7cd1ecc21c105d4f1b5500c0dcc39ac3 *DESCRIPTION
ac5d7b7856909f432ad4c1327b3d7018 *NAMESPACE
9fee5524082614aeed80ddb416be9691 *R/OUwie.R
cf37b0450ea5a208eb36c908e75a96da *R/OUwie.anc.R
cf5e27543138fd22ceadbd1081d393a8 *R/OUwie.boot.R
f3d37e465922a61891adbc8f703ce1ae *R/OUwie.contour.R
42235268c4f41a89e78040c13bf9a9f5 *R/OUwie.dredge.R
6b9cb787e6f79568e5db1dfc0265d33b *R/OUwie.fixed.R
d32b48af9377b31c2017bc043e59ff5e *R/OUwie.format.R
4eb1e3c1257a373465bcb68f9f42b720 *R/OUwie.sim.R
d5436b5644773d370c434b7418081f6d *R/adjust_bounds.R
fca5bb88a0bb796aa8edaba070518880 *R/check.identify.R
12d4d2cef910ae5fb210338872eb6908 *R/dentist.R
b8cfd4ce0b3dc86edf46fc8fe781b5a9 *R/expect.trendy.R
ffbc892bad639798948a0c489d4d88a8 *R/fix.kappa.R
d1bda6549eff3a19c9736faed44a7331 *R/hOUwie.R
613a383e3e7595bfcc1ca1cb79ac5e03 *R/hOUwie.bridge.R
a31286538cb5e2908d799df75c19557f *R/hOUwie.internal.R
8b6559bb54dc03a838963b5391ff2b25 *R/hOUwie.proposal.R
9919df04e99a85500a8005608410eded *R/hOUwie.pruning.R
45108a614a82bca1150878ab25ce6a0b *R/varcov.ou.R
3a9eb904a75477b554f4e62f3892e7cb *R/vcvbypass.functions.R
ebfcae558a747e7e9f84455cc59ecd0c *R/weight.mat.R
5820125a59374cb44da836139779983d *README.md
ff79cc4a62df4828ada7314dd9a1fda8 *build/vignette.rds
2fcec431286f8b3792c1f4dde14c14cd *data/sim.ex.rda
2fcec431286f8b3792c1f4dde14c14cd *data/tworegime.rda
64145ccf6ac5a55cc306a2051f0ca5a5 *inst/doc/OUwie_2.1_adds.R
63f94f4674f94df59b5458de35688cc3 *inst/doc/OUwie_2.1_adds.Rmd
15d1919a572b3e23a22d34a4e6257f86 *inst/doc/OUwie_2.1_adds.pdf
90dab52a6fa950e965f6f650dbbe0127 *inst/doc/calculationUpdate.R
c2248643bafc34cf33f110c7eef6b8c6 *inst/doc/calculationUpdate.Rmd
a676d38e3b6d5726efd0988726ca6c2f *inst/doc/calculationUpdate.pdf
2a9b804bc6db7c2f0bd266db54062832 *inst/doc/hOUwiePerformance.R
9d79634e69b7415896cba3b7d6b8ea52 *inst/doc/hOUwiePerformance.Rmd
0392eb3ca400f99f52f6fe920d634023 *inst/doc/hOUwiePerformance.pdf
9e7a363b52df938d4c8b4f27a5966f32 *inst/doc/hOUwieStarterGuide.R
c75282fc2a738ec9f871fb3f879b0e05 *inst/doc/hOUwieStarterGuide.Rmd
87421c9e84925ab353dcfe8c8ab0ee46 *inst/doc/hOUwieStarterGuide.pdf
3bcdcd3a6955963217304aaa2c21cb15 *man/Example.Rd
19f0747b49d12fbffe3dc5ba066c9677 *man/OUwie.Rd
6e9aea41f98d4e4891cfecf418b7f380 *man/OUwie.anc.Rd
01a85a63095ff9b435a0e0376181eb7f *man/OUwie.boot.Rd
d89ca52cb3adf7539de8c38f1cb617d6 *man/OUwie.contour.Rd
79a438cf544f175c3a7c232ea19dbbaa *man/OUwie.dredge.Rd
b874789bb07d8aa156faf21c50a44878 *man/OUwie.fixed.Rd
4d2aaa9921548213f00fe2c5aeb564e8 *man/OUwie.format.Rd
d9d37a08d2b42fd55b23b5ce7d663660 *man/OUwie.sim.Rd
6ee870ff719c03f1a91de6f2a24a4e00 *man/check.identify.Rd
121a0db1841bf47bc44963fb8776a7b0 *man/dent_likelihood.Rd
d51a77e05f2059abd2c93a2e7d11a362 *man/dent_propose.Rd
10c491fddef5c03374f2825642035e2e *man/dent_walk.Rd
ad2728953afe79dce09bfc1b1130cf2c *man/fix.kappa.Rd
9d49264f7384541e0a7a7f1653b207fc *man/getModelAvgParams.Rd
1bb463a4752e4c0bfacff850ac4c4730 *man/getModelTable.Rd
aad9582ba2697c5ce2540d703474c65d *man/getOUParamStructure.Rd
e7454ae73c2df7509f7e2736ac622d4c *man/hOUwie.Rd
869a4328b14fe1235f9ab5b87687e7e7 *man/hOUwie.fixed.Rd
4eb8ad281036454574043638654c71ab *man/hOUwie.recon.Rd
7b5fc3c945410ec271bc916d3529d304 *man/hOUwie.sim.Rd
27073a7fbb09096d8c7f792f5ce67efa *man/hOUwie.thorough.Rd
14cfb576d9078ebcc1ec918e3920018d *man/hOUwie.walk.Rd
96d04d0d416797c6e98c0ad45683f072 *man/plot.OUwie.contour.Rd
0f38222a4705d7c0c1d31eb986579332 *man/plot.dentist.Rd
60fb176fcdd352241c9dd3c16aa527bd *man/print.dentist.Rd
fc1995cdafa6e60faec9c2799a41e598 *man/summary.dentist.Rd
f61241b9c02a7507307b5da4e81e544a *tests/testthat.R
99322b4a0c11bd98858845d968234aec *tests/testthat/test-anc-state.R
d222a14594439150c488f6750c20f728 *tests/testthat/test-edge-order.R
f21a63cc28fba7501324f1b0773bc40d *tests/testthat/test-houwie-pruning.R
3a3c945a53dfac367917f88a67ac0012 *tests/testthat/test-houwie-sampling.R
8911ef4b9f0b9d806b3b25122731b714 *tests/testthat/test-houwie-tree-plan.R
50fff4850f474f114aaf6990de33128d *tests/testthat/test-houwie.R
908dcd361f101a273a0d08566ab6b7e1 *tests/testthat/test-likelihood.R
1cfd4d60217865effcf73e75f242556f *tests/testthat/test-model-averaging.R
a012f4a5f9d8456536c58237247700ed *tests/testthat/test-restart.R
63f94f4674f94df59b5458de35688cc3 *vignettes/OUwie_2.1_adds.Rmd
c2248643bafc34cf33f110c7eef6b8c6 *vignettes/calculationUpdate.Rmd
9d79634e69b7415896cba3b7d6b8ea52 *vignettes/hOUwiePerformance.Rmd
c75282fc2a738ec9f871fb3f879b0e05 *vignettes/hOUwieStarterGuide.Rmd
2e29459ac506a4d1de4392ce2e755938 *vignettes/ou.sim500.tre
7f225dd1e19c665734bdfd3a5dfed088 *vignettes/simIdentifiable.Rsave
9ca73333977dd49bc2e6c24d3b89df52 *vignettes/simUnidentifiable.Rsave
81da0c0036bf506b8d5c22b7736a45ed *vignettes/surfaceDatNRIndent1_2.Rsave
5ed18531944a8037a32f65c9ddfa3cef *vignettes/surfaceDatNRIndent1_3.Rsave
c8e8b1364999bcb1a3f8806d31fff805 *vignettes/surfaceDatRIndent1_2.Rsave
c3f49873ad626e01694d17ef0db80cf6 *vignettes/surfaceDatRIndentR_2.Rsave
