Package: MatchAlign
Title: Parsing GFA and GAF Alignment Files
Version: 0.1.2
Authors@R: c(
    person("Camille R.", "Mazurek", , "camillemazurek23@gmail.com", role = c("aut", "cre")),
    person("Michael J.", "Tisza", role = "ctb"))
Maintainer: Camille R. Mazurek <camillemazurek23@gmail.com>
Description: 
	Provides tools for extracting segment paths from Graphical Fragment Assembly ('GFA') and Graph Alignment Format ('GAF') files. parse_paths_gfa() reads P (path) and W (walk) records and returns a named list of segment identifiers for each accession. parse_paths_gaf() parses the path string from each alignment and returns a named list of segments traversed by each query. parse_segment_lengths_gfa() reads S records and returns a named list of segment lengths keyed by segment identifier. These tools are intended to simplify downstream interpretation and analysis of pangenome graphs.
License: MIT + file LICENSE
Encoding: UTF-8
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
URL: https://github.com/cromazurek/MatchAlign
BugReports: https://github.com/cromazurek/MatchAlign/issues
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-09-03 21:10:48 UTC; camillemazurek2025
Author: Camille R. Mazurek [aut, cre],
  Michael J. Tisza [ctb]
Repository: CRAN
Date/Publication: 2026-09-12 15:00:12 UTC
