a332caa2b75f904da9acd4b30a594b26 *DESCRIPTION
29c2bc0211493334c3b87c925863ab2d *NAMESPACE
a9c1a9c2db978ddb0e43f970df4a0d2f *R/RcppExports.R
5b71c91e6290044ec6441402b55e1f3d *R/annotationSet.R
9daa6a481aa14d2147f9fab6238519cb *R/coverageDataSet.R
e8ddc9373ffd33b562d1209b76059aee *R/cryptic_transcripts_methods.R
ea85c4ff9ecee8bfc783b0f3b1582c63 *R/datasets-documentations.R
f82c88f7a53dce8ee1b1362f7bdbca66 *R/initiation_points_methods.R
2e7dc731ea23666929b8d1776c441c1c *R/utils.R
61690bb197f05731b8f9d9ea1175d99c *R/yCrypticRNAs.R
a6662d804229e95b12908c5ad2a52c2e *build/vignette.rds
b987db0ee4612b5dba23942d59e2a690 *data/annotations.rda
79d204cc1343a8503288dd3e17e0c59f *data/introns.rda
e185238572fd98542d29227fa2ec4987 *data/rna_seq_signals.rda
ead5ca2bbea26c62210b66819faa5a77 *data/yer109c.rda
c5e31ab4087c1f4e004cc623929c740a *inst/doc/yCrypticRNAs.R
22b10f0818e04f59e97c65351749f09e *inst/doc/yCrypticRNAs.Rmd
07ec95dfb74a54380823ae0688e2cccd *inst/doc/yCrypticRNAs.html
0eb480c87555bb01af20ad0c73d99e0d *inst/extdata/mut_rep1.bam
43882d8b8d026db9233a2295e8dca016 *inst/extdata/mut_rep2.bam
e5a2dff917017b6f0af105bbb9bc709b *inst/extdata/wt_rep1.bam
bbd45dbaaed624f3f9ae63c3588bcfc7 *inst/extdata/wt_rep2.bam
17eee09b9f7bd0998cb3d536977b5090 *man/annotations.Rd
4e677384673f1056773c0995f1bac647 *man/annotationsSet.Rd
8e120f1c55ebbf19335fecc6e6f20b80 *man/as.annotationsSet.Rd
949552b24262556c2e55d1f3a503d1fc *man/bam_to_reads.Rd
f98d031e02a64afb7d329544fff0cf0a *man/coverage.Rd
dea3f8a8b67b2d9f770a1cdd757880ca *man/coverageDataSet.Rd
31f8b075e2d2fb768d08ca70ea3f345d *man/enrichment_score.Rd
086538608443a98de6216d17fe1764df *man/gene_coverage.Rd
641c2beafd2d18a68ed0435d57f3b502 *man/genome_wide_scores.Rd
4d2864fa8afc1649cc1a52ead4d1e9c4 *man/initiation_sites.Rd
8774269545a0dd391fa73a7325660afa *man/introns.Rd
2eb28ca3ae5c0b1455f291ed0673b526 *man/ratio_score.Rd
9bbe065ab9ae0e0a75c5fd5e77629cf4 *man/rna_seq_signals.Rd
5d624725380c240bdb1a3d469c29379a *man/yCrypticRNAs.Rd
466aa3ba1552ef62aaf8e61ef72e2d4d *man/yer109c.Rd
d2cf1bceae9adee4c3069124467fc924 *man/zscore_score.Rd
d1c29ecad2958acb3c3cf2b72d6753a1 *src/BlockedIntervals.cpp
83c7f2fed2dbb8f99ce07e42528e95c5 *src/BlockedIntervals.h
92d7dd508abdfafa2f214d5b695518f6 *src/RcppExports.cpp
844b292a4536d1c8069c9d16339771fd *src/bedFile.cpp
0092c4e34d8e8e938ae981ff08c67d0f *src/bedFile.h
fa6051ed11c2263d9b503e6ac3e2c159 *src/lineFileUtilities.h
437774d36b86fe113826d140057a94ce *src/my_coverage.cpp
59209c6e91ddb6ce931b166fa2cd3758 *src/my_coverage.h
668a790abce6aadab763c26f3701ace2 *src/my_coverageMain.cpp
00e5f69ea0a73e4d68e515c21c8284ed *tests/testthat.R
6ba42182c4630e90e98519c7aeef6083 *tests/testthat/test-string.R
71a2433e525750dbba2cf19aa25ec1e5 *tests/yCrypticRNAs_tests.R
22b10f0818e04f59e97c65351749f09e *vignettes/yCrypticRNAs.Rmd
