535d7658ca20c75003189f9eb6b51e2f *DESCRIPTION
d60ad590fd368ccbc17441b3aece7345 *NAMESPACE
c528c7d14efba4e5400515a5f65b640e *R/AllClass.R
92259cb423dd490ea4862bfa682abf7b *R/RcppExports.R
f68e983a598fe45a5c2bdd9e550d51f0 *R/chromR_functions.R
e1a4d03b80e18edb2ef96927dda8f6b8 *R/chromR_methods.R
bff23fdc34f995086fe034310893c8bf *R/chromR_to_vcfR.R
463a3e84d1522e2101e73dc93d19aa1a *R/chromo_plot.R
14f7ee1e7203359583c077bfb03d35b9 *R/create_chromR.R
fcd21592b702a5e3c551a66ee8cf2b38 *R/drplot.R
a0e60081946770f83170000b3aeeb3db *R/extract_gt.R
66c2fee68a972271bca83f8f280f1603 *R/fasta_output.R
b8128f2a1f4149a171d428babb4cbd63 *R/genotype_matrix_functions.R
54d344fe94c66fceb2ae3de2d4722c43 *R/heatmap_bp.R
1f96524162062a29e8a5bf79c2e6202e *R/io_vcfR.R
e7850040eab2dd52fe1c613c769c795a *R/onUnload.R
b6e1c6057d5cf7c8779d19b810155f52 *R/proc_chromR.R
4157fbb30db699ee5fcdfd8e372ddd52 *R/query_gt.R
406b6f43c00267bc3470249abd92ae1c *R/ranking.R
aacfe2ae858cb9ea8e1ebbd5206b8d03 *R/sandbox.R
a5615a7fafe9213cb74b4142a58631e6 *R/summary_tables.R
d11b48091c3d99b32225b1c639be4c11 *R/vcfR.R
6802a12f65f78d873b78431646348ffd *R/vcfR2DNAbin.R
97a1e9322891bbba06ad4db671fe46bb *R/vcfR_conversion.R
9ac5ff0c92c329b80a9fef26df321aa1 *R/vcfR_example.R
8076d4c451258ef5b5a0023e8c4e2374 *R/vcfR_methods.R
c4edea0048cf9350eeeea22e9860db11 *R/windowing.R
3a22a00fee49acf62ce3e790d55d69a9 *README.md
1a8f66c76ec66af99cc6b13ba98b9068 *build/vignette.rds
fcdd17a1c8b7adb4d72c32b41c780ed6 *cleanup
a59634d93a55f32fec23400329223c18 *data/vcfR_example.rdata
fd4622e6d8ad7a506dab83505a98e52b *inst/CITATION
e8e88ba8fa6886c47c5919d79139600c *inst/doc/converting_data.R
8a930834abce40a14fdfaa82916d8e3f *inst/doc/converting_data.Rmd
e48129d70d0bcd46ecf65a01ea2afba2 *inst/doc/converting_data.html
e101377564d3820d95f77c16af49a12b *inst/doc/filtering_data.R
9e68aef79eceabdad75daadd453b7c4a *inst/doc/filtering_data.Rmd
984c8750140bee6c74c431583b3934c1 *inst/doc/filtering_data.html
b0691d3228e97d83777f685df43b264e *inst/doc/intro_to_vcfR.R
f732ee927455f91ea3432c6cc98cb327 *inst/doc/intro_to_vcfR.Rmd
4a6a56fb47223dd651c5c4c2b87fe4af *inst/doc/intro_to_vcfR.html
1ad1bca0eccfcc56d1a7b494b2ced3be *inst/doc/ranking_data.R
75659f3d916cfa1658a4f64ab45a5749 *inst/doc/ranking_data.Rmd
586c3fba2ca04c53452270135cfbd0ce *inst/doc/ranking_data.html
d30282054f651f0d2b55f69d4f20b274 *inst/doc/sequence_coverage.R
8112bb0fe6607bd20d1fd346802b6242 *inst/doc/sequence_coverage.Rmd
c2242722a31e61c2b9c4e6ffe01969dc *inst/doc/sequence_coverage.html
0028ec189521cd10174a1b2ed3e8ca8a *inst/doc/vcf_data.R
20f0a6e60aad1e13e42e760da521d9c1 *inst/doc/vcf_data.Rmd
c0ca72302d16416382602665b58b28a7 *inst/doc/vcf_data.html
4457178555bec060183d167d427fbf18 *inst/doc/visualization_1.R
b5100d4b9561c0f99db171ee868d941c *inst/doc/visualization_1.Rmd
f4f629b0ad814cf1bfa01bd474348412 *inst/doc/visualization_1.html
a4cbb9db4755d627878baef07309185e *inst/doc/visualization_2.R
693726bbdee8c5bceb709d9553747227 *inst/doc/visualization_2.Rmd
1468d718c100175b65d6a15b6cdd9f7d *inst/doc/visualization_2.html
a0e9edb356c391019202b19acaf2e00e *man/chromR-class.Rd
2fa3d962f2aa9a68ce6271ad25927046 *man/chromR_functions.Rd
b40ad255c2a9c68ca9a9710b9ae9fbbb *man/chromR_methods.Rd
0fb9a43a38e11911edea8eecd4c20bc9 *man/chrom_to_vcfR.Rd
6b9aec4931853ab5daf1ca5e8ac9efbe *man/chromo_plot.Rd
b80e4f560986c904c5d27e560975af8b *man/create_chromR.Rd
ff3f4c087ef51d83d8b7187410e46a3d *man/drplot.Rd
c40c49ddffe765ddf5c8a047ec6181be *man/extract_gt.Rd
68117c122524af2723e10a6d5f80177a *man/fasta_output.Rd
cf85a119389bbee842a7c423510180bc *man/genotype_matrix.Rd
57355e1761c0363e88168f168bb633d2 *man/heatmap_bp.Rd
efa3f82e6f8172e13f32f82b707de711 *man/io_vcfR.Rd
b63be8482bf446f34b8ad3beb296b257 *man/proc_chromR.Rd
51fbba159d336a50d6a6aa798699270f *man/query_gt.Rd
ae15f1923dff4c8052512d5933e4cc17 *man/ranking.Rd
3702341dabc49bd11c9b616e9896b81d *man/summary_tables.Rd
1d75cda12cfcefe3d12515b3b65d1ff7 *man/vcfR-class.Rd
6bda7b628184bc1d9836d2ec4f272fb9 *man/vcfR-methods.Rd
d1a2d75a761bba6d149638c8febac3f1 *man/vcfR.Rd
4aeebf9dbccaaf81404fb6a73059121c *man/vcfR2DNAbin.Rd
ff853c39070b3e42f49d0e021e8a1afb *man/vcfR_conversion.Rd
9aff0285e409611cab6463ea2d6bda01 *man/vcfR_example.Rd
3104f3c885a18df1375c0d9f5698e29b *man/windowing.Rd
b475a70e847f05fbdedc56689a949015 *src/Makevars
e4fff8efe7ec58b48c06d3019d0fdb71 *src/Makevars.win
b2091b3b3e15ad146f69fd2627cd3e94 *src/NM2winNM.cpp
2e61b1c17e8ac33136b924a02a4392fd *src/RcppExports.cpp
ab8fee6d3be534ba7402842722e3402b *src/extractGT2NM.cpp
289159dec39137dd1fa8f19ca62578a9 *src/gt_to_popsum.cpp
79eb30075bc8289c8f5a07f96dcaba42 *src/pair_sort.cpp
5ec7bc48998b4262ad6adf465d6078a5 *src/rank_variants.cpp
2d50291243b62c05df12db5a30926fbf *src/seq_to_rects.cpp
c37ca1196da40324c016f7c895d0d823 *src/var_window.cpp
2ba366d28aba041e50119e1cef6f6940 *src/vcfRCommon.cpp
d857126a23008e6ee0f460a2412e4c45 *src/vcfRCommon.h
7b8fa5db46ea96725d261d82d7fe1e24 *src/vcf_io.cpp
23bd6234b0493fa9f9f2b92c9b2edf65 *tests/testthat.R
60d38ffea35090514c028737f0f829ac *tests/testthat/test_1_vcf.R
26e4cb56d478b26d3c92788a41b619ba *tests/testthat/test_2_chromR.R
8dc8932345522bcc94b4887f7ed68746 *tests/testthat/test_3_extract_gt.R
a8b5e472d653a41aa9fe3924ce42924a *tests/testthat/test_4_vcfR2DNAbin.R
edd263b8fd3a19f313ea1c5bb1e0e8b9 *tests/testthat/test_chromo.R
9c36918a84993b4871ae06b066330521 *tests/testthat/test_chromoqc.R
64a4f58a1f7584c8587df9811c0c9ae3 *tests/testthat/test_conversion.R
dadb76361210e8fac4b43daad921699f *tests/testthat/test_drplot.R
e77fcd745af3fe0727d57dacb03710bc *tests/testthat/test_heatmapbp.R
828af814a0036f2c3c7cf8365392d40e *tests/testthat/test_io.R
e7cf3c2216ce8647a35558d4bab2509a *tests/testthat/test_rank_variants.R
75c84f5b6c98bdb281c569b50e69a4de *tests/testthat/test_var_window.R
97eed054a6e9a3ed38d7493edfe299e3 *tests/testthat/test_vcfR_methods.R
9bc6b61de795459cca3f8f7cba806f0b *tests/testthat/test_windowing.R
8a930834abce40a14fdfaa82916d8e3f *vignettes/converting_data.Rmd
9e68aef79eceabdad75daadd453b7c4a *vignettes/filtering_data.Rmd
12b05d52cdf643c811356e1107760fec *vignettes/intro_to_vcfR.Rmd
75659f3d916cfa1658a4f64ab45a5749 *vignettes/ranking_data.Rmd
8112bb0fe6607bd20d1fd346802b6242 *vignettes/sequence_coverage.Rmd
3cdf661081f2c22e775deaa33274b68f *vignettes/vcfR_flowchart.dia
414b8298b74306d9d298e6315b23b00e *vignettes/vcfR_flowchart.png
20f0a6e60aad1e13e42e760da521d9c1 *vignettes/vcf_data.Rmd
b5100d4b9561c0f99db171ee868d941c *vignettes/visualization_1.Rmd
693726bbdee8c5bceb709d9553747227 *vignettes/visualization_2.Rmd
