878bafb8ab5b0a5b996d99b0ebad07c2 *DESCRIPTION
c1f7886dce14c1c38162b91acae8edeb *NAMESPACE
ceaaabcced4ad276847a50e33ecda5be *NEWS.md
8a113081688e5428e5787b8fa1cde700 *R/EMMA.R
54bd29ab2cecc62f445cb2a4a3666470 *R/GWASHelp.R
ec90f862e29d3cf04e04077933e46a82 *R/RcppExports.R
d6ecb628ce4e023c27fe9dcf08b00ef5 *R/chkFuncs.R
3c7460dd5f3d531b15416abdf5eaf305 *R/codeMarkers.R
093bee0010de2d765148131295ee52b9 *R/createGData.R
06bf7e1e8bf320e55ba9ac963787b60a *R/createGWAS.R
b736f4d8c04834938ef33f517987c2d9 *R/data.R
b51fb343d0691f6cd8da1b43cdad023d *R/fastGLS.R
d3a875377e5555d6075580bdd9b572f0 *R/geneticMapPlot.R
0698f3b7cd13737a27696364b8e5d02a *R/kinship.R
4568f8dc8bd5cadd808d18637362ed11 *R/manhattanPlot.R
fe642faa4747c824b2d21b04277e66e1 *R/qqPlot.R
25181240ef19ccbe0dfb66973220a0fb *R/qtlPlot.R
fd5a17ca21dd6b91f5f625287ec0902c *R/readPlink.R
43569a1733449d8c30225d2d9b0011fb *R/runSingleTraitGwas.R
0875c7b5743f5fa6a401a2f92e9ca266 *R/statgenGWAS.R
ba0b6ffaa3ddb73bc429556eaaed9acd *R/utils.R
7e8e2e4da20c24fb2872093bbce15e39 *R/writeFlapJack.R
5692e3a4c30c1979ae6cbde404a84b42 *R/zzz.R
d51a8aa140e60c55a0d47b420206e044 *README.md
afbe4209b3bb961ba3e41cbfe79ea507 *build/partial.rdb
cc5130f04aafce1428fd9292ee3b3ee1 *build/vignette.rds
6eeeb1e94b312355adcab7f36696cc0f *cleanup
e34eaff479f9431c4dfd19c06f26568f *configure
ab743c9a02383bee1a37217b57773e6f *configure.ac
c87fdc93e6aa814fdcd7b2443313917b *data/dropsMap.rda
75285487b07fbf1e8fc01befc20f4a11 *data/dropsMarkers.rda
33efea5d9a898044b07d58152c3d2625 *data/dropsPheno.rda
b0d28e3df21f642aff5438bb8f1ce5a7 *inst/doc/GWAS.R
c3ecaf6c4464303b01984a9a24235815 *inst/doc/GWAS.Rmd
4ffde2de770e0c6e43dabc3c7d5174dc *inst/doc/GWAS.html
9eb5f003b27c7cd79f717bd30b7db5ea *inst/extdata/testData.RData
ea98b902fe469c5a6b6e1a28fb08e3d6 *inst/java/beagle.jar
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/result1_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/result2_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/result3_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/resultM1_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/resultM2_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/resultM3_GWARes_ph1
c71d65b5318bdad87c5682afcb20d907 *inst/tinytest/stg0_GWARes_ph1
5a7b6ee90f48d071d66410ef2d320d7e *inst/tinytest/stg1_GWARes_ph2
e805c9002d7c5c8ad0a1a163c1b296be *inst/tinytest/stgM0_GWARes_ph1
90fb81c13d0b8d0e85a73b5b7ddaeafa *inst/tinytest/stgM1_GWARes_ph2
df8bf1dd316959e239c52427ff5aa7af *inst/tinytest/test_GWAS.R
0c9355dbf23b9cc411716f0c40750428 *inst/tinytest/test_STG.R
07bf70de86f30da07a434a57f7f40fc5 *inst/tinytest/test_STGHelper.R
271b267f5db31f3f8df7a05e099882a4 *inst/tinytest/test_STGoptions.R
b842765d0b6cb05379de1b29a533987e *inst/tinytest/test_chkFuncs.R
1684eeddb2d50c2390db768a57b52fe7 *inst/tinytest/test_codeMarkers.R
cdbe8e33106298e91b64e093e50ae1fa *inst/tinytest/test_gData.R
84f0483e27db58f6c07b11c2fe08ee14 *inst/tinytest/test_kinship.R
9fd98da5059514a659054f6eeedbb9f8 *inst/tinytest/test_plots.R
017db8436ca6774844acf4fb668a8d6b *inst/tinytest/test_utils.R
143d53f8c8ff2740ce125560ed322711 *inst/tinytest/testdata.rda
6f14213ffbe8b3d364d8304157ce2b4c *java/README
d55a3f59d0cb2fdf54acbd9a3d5276b2 *man/codeMarkers.Rd
75dc8429c59802ef56507ddfcc366f34 *man/dropsData.Rd
c2bac4ee9d26267da3b2b1ede6ef6d93 *man/figures/README-manhattanStg-1.png
003315eae181b553e0c3446215a123e8 *man/figures/README-qqStg-1.png
d0c95b66f60eddf73c0a04cc897859c3 *man/figures/README-qtlStgNorm-1.png
9b39275c4a4f546de5abe846ec69c024 *man/gData.Rd
ad1472caa91cda093ff57e6783417892 *man/kinship.Rd
5221a7b777f442346c57c99d77f108d6 *man/plot.GWAS.Rd
0d8bfb35e305288b1f76d242c6da3d44 *man/plot.gData.Rd
022d0e6c3a9dfd0ccb279f71ad14efc2 *man/readPLINK.Rd
776cac2034546a6be932fd4d9977f285 *man/runSingleTraitGwas.Rd
b2461a3325600fd0d212f19a651748e7 *man/statgenGWAS-package.Rd
f173723f573504cf7ad8352247ec99d8 *man/summary.GWAS.Rd
81bbdea2a090d3b735e0e216e5e6edc0 *man/summary.gData.Rd
9984a9660f1bfdbb1437242cca94781d *src/EMMA.cpp
8098ef98fba0596198a48212223bf20b *src/Makevars.in
61059660eb073d93e00e8ee054237071 *src/Makevars.win
d8150e6fb3ac320b80f2f750b640ecf1 *src/RcppExports.cpp
29f32769d6164e1c1d4e1506528bf4f8 *src/codeCharMarkers.cpp
8230bea2a40eb150c44b5d4da288c83b *src/fastGLS.cpp
768c72ab56ca4f806be7293665e35385 *src/getThr.cpp
dca120fb5d1c68c557fbd57ebd7f021c *src/getThr.h
7e6da955339718108bd7a7d09c792cd2 *src/kinship.cpp
94943cff5669015525cecaf1b43fe195 *src/utils.cpp
74d10307362652a2ed9c8580bbc3db38 *tests/tinytest.R
c3ecaf6c4464303b01984a9a24235815 *vignettes/GWAS.Rmd
71e9723a767490c1442b8b4e83b43403 *vignettes/bibliography.bib
