7b409c8f89c9482b0f537bfcd94b5ec8 *DESCRIPTION
b77b3be5252da7d71f4e8dc4c5bc9a6b *NAMESPACE
2fb91504f82921fce03ba9a84f824a51 *NEWS
c45f2365b090f1584fec4eabdd77e7eb *R/analysis.R
fc7f3477ae2acef22d4fa6a4176b3723 *R/bayes.R
a47c10be6896dfb48d6501f735abdf6e *R/graphics.R
627e79b80658102d07330c6553f543b9 *R/misc.R
51c34c1249c012ebd6460931d8843765 *R/model.R
0bb29f6ee5d0ab3e07c1c1146a70383a *R/next.R
89abce8fc747b1601b8ec942220ca955 *R/workflows.R
46ed80095c1ccd2d2797b62906333562 *build/vignette.rds
dfc76da9a593ce28ef24f61a873581a1 *data/CP.example.RData
948219a7bfbcf0725890253db02ed445 *data/CPsnp.example.RData
e8c6ea7f60ba0977b0367f5f3bfe7a7d *data/abf.data.abfreq.txt.gz
45a3580dff47132bf791be79e4089249 *exec/sequenza-utils.py
fc731603bfdc4c2055dcdb79d2e3d22e *inst/CITATION
98d2ba294ad8eb038e861e80396c5f63 *inst/doc/sequenza.R
29eec699a1572c9d423c46d89711a756 *inst/doc/sequenza.Rnw
3f106719b2f17c19aa78ec2d71c39d96 *inst/doc/sequenza.bib
179c886dc032e1270015840e38a056ae *inst/doc/sequenza.pdf
f947de129f07281360e87abdf8a82a79 *inst/doc/sequenzaSNP.R
a2002aa5257d31736c8cce7ede537907 *inst/doc/sequenzaSNP.Rnw
2c83fd7c03c8da10de18f8003433d8a5 *inst/doc/sequenzaSNP.pdf
e98c25a5f2e7a4ad8f2667dbb03fe5ed *man/CP.data.Rd
03649c1dca080688f21ca87067f3f1df *man/abf.data.Rd
6ae77d97d90a4c55e8a23679b38cf015 *man/baf.bayes.Rd
cb9cb2c72a00523688ba0cae15869c2a *man/baf.model.fit.Rd
d7fa16c8499e93e11817333b9087855b *man/chromosome.view.Rd
fc6a67b57c9cce7cbb84ea3ddeac09a7 *man/cp.plot.Rd
6aa41a92cd357e6464049e4485a7878f *man/find.breaks.Rd
bf87c63292decbcc33d01e2a5ba1b70c *man/gc.norm.Rd
90fd803411b356c2e492d299955c442e *man/get.ci.Rd
2470084f3046fab6618823710aec075b *man/model.points.Rd
0e5d9fa10e885c247d856142b5906f52 *man/mutation.table.Rd
55090b910496e29e9b59de209d2a81bb *man/plot.windows.Rd
6658b49dc988d59fb688628585c86849 *man/read.abfreq.Rd
a9d01fb2444010bdf2731cb66c33cf11 *man/theoric.baf.Rd
adb6b3acd4bef1cf133dfab8c9fde78b *man/types.matrix.Rd
1f388b1dc2b36a86cb7bc2c33ce84326 *man/window.values.Rd
e10fd109eb58795c54d3aac609036e3d *man/workflows.Rd
29eec699a1572c9d423c46d89711a756 *vignettes/sequenza.Rnw
3f106719b2f17c19aa78ec2d71c39d96 *vignettes/sequenza.bib
a2002aa5257d31736c8cce7ede537907 *vignettes/sequenzaSNP.Rnw
