1107e6ff0213088991b6ee36ced3e41f *DESCRIPTION
5e877715c10562da025b9a601e6c1b71 *NAMESPACE
542bc79af5c7c3779932f10ea76f91eb *R/PTM_MarkerFinder.R
5b8840cb519e2d80d0b18a8f24047cf9 *R/RcppExports.R
edb55dbf703db5095ca2da3acd2b1510 *R/aa2mass.R
3bb67dc364b1265e36805f33db8fb382 *R/centroid.R
8955d7cb756afbc952abc5643c5bb482 *R/comet.R
e474472ae1e9a38ba5d12c4f45fda68f *R/de_novo.R
2ba4ef134407d04e229bed9ae53977ec *R/deisotoper.R
937beeab4ef1e1d9df1a207cf53b801d *R/findNN.R
ad0034a3915cc450245ee0272afb6283 *R/fragmentIon.R
451317ef11b6a2f96b8694a36552047c *R/genMod.R
383914886d1596b45fdde36cd38553ce *R/iTRAQ2GroupAnalysis.R
93c5f4f5632186564153d385761976e5 *R/lcmsmap.R
4665dce0b3962a239eeb2f0d75636946 *R/mascot.R
6842712841339c3928f48636f8e54f7a *R/mdp.R
a952cd0c2a2c62d02c60c0a76e57f455 *R/parentIonMass.R
631265c767380d5b54caa357e757207e *R/peakplot.R
ccce09b58042b0a7a96eda5b59d4b845 *R/pepxml.R
c36eba240126b1af709dad766791c406 *R/pgImporter.R
15ae159f85652a791453d182cc29bdb6 *R/pgLFQ.R
1bdb82885d61c7ee79332a277f5a2220 *R/pp.R
ca35c56c0c379f292f8fab68b3a19f61 *R/protViz-package.R
78f9a5fc310261b733c3ee5b8ce1a98b *R/psm.R
3b9805e614a9934bc5cc9e4fdcc0ae45 *R/queue.R
220f466e4dd6aa4c1aa8ee6891a9b2a1 *R/ssrc.R
7593968ba9533e62fd8c752f2a8c01bb *R/sysdata.rda
453599cfa3c359046e3e78e0c569ed99 *R/zzz.R
5a5f819210be124b8c57e5274ae05071 *README.md
ea124a494ad7922985532ad3b308e4d5 *build/partial.rdb
7b8aaf838df12d79951e079848bde4e0 *build/vignette.rds
a4b835997fe3fe64238836eb5d979742 *data/AA.RData
1169d28d471d654d44ab11fbeb7fad8e *data/ADPR.RData
a7d9cde11a9f003614841335f8e079e5 *data/HexNAc.RData
ce174ecc08dde8c7e9a20f639f366228 *data/averagine.RData
d508e0a9c898d0ae1334844776f38a24 *data/datalist
d587791a5c9d55fbf7a618be3d5cc75a *data/fetuinLFQ.RData
601922c525f1b02d7f3c2a3b33a43ba5 *data/iRTpeptides.RData
bf9c18b97846ca3619b7ceb5b2e46cf2 *data/iTRAQ.RData
8450919282665051d39daabe6aa183a9 *data/msms.RData
40467c3fd4bcc9388f58320db2e6a94d *data/pgLFQfeature.RData
d25756525079de04b8287ff934c8bd5a *data/pgLFQprot.RData
c234dff499abc2d9f61c97e3d7c4bf40 *data/pressureProfile.RData
daa9c303936ebe822c0bfbebf6bd6733 *demo/00Index
d553d739fc6b78566ed04444d0a461df *demo/PTM_MarkerFinder.R
f45c1b16c999f2c36134eecadb373909 *demo/peakplot.R
e8e6de925245a465d2ac421ee0628597 *demo/pressureProfile.R
cd82da9cd5a71337020cd26e87376f2c *demo/quantification.R
2e96a497a8a8a6c6f07acbe14f30ac92 *exec/protViz_annotateSpecLib_with_protID.py
670d6468c76929c27cc04bea7df18825 *exec/protViz_annotateSpecLib_with_protID_split.bash
006d9ad3aca2c547707fb572255bb9ad *exec/protViz_bibliospec2RData.py
386ed045a439e0339d35262e9d719450 *exec/protViz_dat2R.bash
ca2fe9383a60b3c8a0d63481dbf38f9d *exec/protViz_extractPressureProfiles.bash
6e56290871832dfca27d85b031322397 *exec/protViz_fun.bash
e987214b38889ad6721a30fb45ef3979 *exec/protViz_mascot2XML.bash
7c4f3c80da1c09aa515923b10fc65776 *exec/protViz_mascotDat2RData.pl
a27b5f3973e06451937cd65c378100cb *exec/protViz_mgf2RData.pl
29a0370c29cfbb0b82a92a0c3b3b575a *inst/CITATION
08d138ae6eb699915e169bf84192a420 *inst/Dockerfile
051e83daa547bff47d9a5c869c608958 *inst/NEWS.Rd
a48e25324c20b33ec5b64a33b3106881 *inst/doc/ADP-Ribosylated-peptides.R
10fae353a52b77e056ff122747908fdb *inst/doc/ADP-Ribosylated-peptides.Rnw
92dcce4bbc1ecac845a4372f0fc39788 *inst/doc/ADP-Ribosylated-peptides.pdf
de8c5dfa15cfc795d6c58e9e0a2d5003 *inst/doc/PTM_MarkerFinder.R
e1b5f5857c644c30e6ce89563b004530 *inst/doc/PTM_MarkerFinder.Rnw
3ab50a199e8d5c5fb63b722f50e20c32 *inst/doc/PTM_MarkerFinder.pdf
ea3697e559ee0462d7590d97d492be53 *inst/doc/poster.R
3a2aea56b674264b312415d929515861 *inst/doc/poster.Rnw
12351e4c53aed4331cb4f8688afa65c0 *inst/doc/poster.pdf
5ff11a3c793935db8b411096975cb909 *inst/doc/protViz.R
62755a2907e9ec0bf978222614a99349 *inst/doc/protViz.Rnw
66371516e673322c920effc534d0cf08 *inst/doc/protViz.pdf
e47ee9f6542f2ffaee664e2d649cc401 *inst/extdata/P12763.fasta
4a55f4abeb61c0d63ed5021ce15e03f2 *inst/shiny-examples/PTM_MarkerFinder/ptm_marker_finder.R
a292341302241cbf4ffc1c19e8851771 *inst/shiny-examples/PTM_MarkerFinder/server.R
7e8f140f1fd700e80d4df94cbf8bce91 *inst/shiny-examples/PTM_MarkerFinder/ui.R
c842585df78eafd3aa6d7da07bebdd04 *inst/shiny-examples/peakplot/server.R
2dbcf913fcbba0e31480b14447b181a8 *inst/shiny-examples/peakplot/ui.R
193db1d91f547348dae92d40211e1094 *man/AA.Rd
8b1751155f4ce370aec3367dbccd68ef *man/ADPR.Rd
7c991c49284819c1e7e26fb98c8fdd50 *man/HexNAc.Rd
2353ab20343be12bdda93d1eb536389b *man/PTM_MarkerFinder.Rd
23b1bc60ffd8529d3e8041b787656e99 *man/PTM_MarkerFinder_util.Rd
43308db08c425924502856cec0ab200c *man/aa2mass.Rd
9f8e31503ad87beb8a48a1ee6a6f04ab *man/assignPlatePosition.Rd
20ab0fd83f78c6b9fef4a3801a7c2197 *man/averagine.Rd
bc87e76cb204807e1cc04f590b008aa4 *man/blockRandom.Rd
981c00cf2da298a24035164394faff9e *man/centroid.Rd
b164fa16c5abdbd02328de98905ef623 *man/de_novo.Rd
bf61b97bec63b80b9710136db5218995 *man/deisotoper.Rd
d5c50c59995a6ba1d0c6f610e5393e09 *man/fasta.Rd
395310f5dd6d370bb3c3fbb111a1c69e *man/fetuinLFQ.Rd
45b178532559394dc9fca95eefd3cc48 *man/findNN.Rd
79e6b10806cc4845eea3bc7829e8b307 *man/fragmentIons.Rd
3f2228152c2bb7caff29ea9e450bd78c *man/genMod.Rd
17dfd02637a460a2a333f75ca66e594c *man/iRTpeptides.Rd
9c16b2d26d1a9c6e430b73fad99df086 *man/iTRAQ.Rd
c849ce9d6aaac21264721286b0a618b1 *man/iTRAQ2GroupAnalysis.Rd
b6f46a6b5329c5b836d2ecd645881e20 *man/insertSamples.Rd
9ed87aaeae888c99d5ad34b893bdd6e6 *man/lcmsmap.Rd
bcb82e32e2b749cb5f36f4f1059bbeda *man/mascot.rd
71c22b57ffb7789db6cb367f1e084d80 *man/mdp.Rd
3fa37904e15542a9d8047313c354b249 *man/msms.Rd
fd75f35f293a0e62ec5a2831daa3fe95 *man/parentIonMass.Rd
dfef26fee4f398d1976deedc732862ae *man/peakplot.Rd
a41003b07860d285e922dfbfaded7fff *man/pgImporter.Rd
94216a2c8bdf765e9c6a2acb305101cf *man/pgLFQaov.Rd
720da14aa6cbdafcbf00664f5451ad79 *man/pgLFQfeature.Rd
8c69b1521352b12cde08935bbbf9d2bd *man/pgLFQprot.Rd
79adaf56fef6f1d626d3bd2103d2012d *man/pgLFQtNpq.Rd
8cee211c76eec2b80625377908f9316f *man/ppp.Rd
e73d6869e195acbe8c372b2213772f3c *man/pps.Rd
4ca6d1cf44e7392671a03781f3887f2f *man/pressureProfile.Rd
e2fd6497f006c1236fc15809e5a45996 *man/psm.Rd
6428b161f724f4d700eb7e6e128f3767 *man/psmSet.Rd
2eaa171a4cebca2bbe5747fe580015d3 *man/ssrc.Rd
91da86e0b1c7b772b649841e3cbdc3f7 *src/Makevars
70a39c458b7d33d231a86eadcb82137c *src/RcppExports.cpp
facb6277c98adfdc27ea571ba6a20ce6 *src/aa2mass.cpp
7ed16d8640f6152e015319c911fb3a07 *src/base/chemistry/iisotopeenvelope.h
1de65a009ffbef00cff704ec36f44bcd *src/base/ms/deisotoper.h
cb2987090125d86e16ba4bee4df92117 *src/computeFragmentIons.c
c15f8d985f7e051a7e3cf9c8a6f5b29d *src/computeParentIonMass.c
9007e5c3aba69100c454693baa6ff556 *src/deisotoper.cpp
cc142837541150c111a23a943ab8e740 *src/fasta.cpp
77cb4156a7e582e8756f0888f8e266bf *src/fcat.c
08a003e33d958ec8931094bae2b8da20 *src/findNN.c
2c4a94ca7d2c2e5153038828f00e2f0b *src/findNN_.cpp
2e35dea87627fbfa4bbca0cd161be4d8 *src/protMass.c
9e97bdc56ad6b63317b2fdf415ab59e7 *src/protViz_init.c
75f3ba46f2e925198b12edf3a8d73f5d *src/rcppdeisotoperenvelope.h
42adb67f2cafa7634115ec6edcb8454d *src/tryptic-digest.c
451179e98a1b0a61c7c1c348d0e0d5f1 *tests/testthat.R
e2b77b92edf7b986f6b10e1978eb488c *tests/testthat/test-aa2mass.R
ebb72fc4439990d84ad159b83ddbf4cc *tests/testthat/test-centroid.R
501e822a9df5a459d1e4261f48926b4c *tests/testthat/test-deisotoper.R
96221606003fb4c099fb6240d5b5c1d8 *tests/testthat/test-fasta.R
da22018ac3ed4a095224435816af9302 *tests/testthat/test-findNN_.R
49b95ff60b1f32c0b558e849fd0f9720 *tests/testthat/test-fragmentIon.R
f087aa70b5a69ff1bdd241f9cf8ebd25 *tests/testthat/test-psm.R
a17b9a02725815d97a3fd694084b4b0d *tests/testthat/test-ssrc.R
10fae353a52b77e056ff122747908fdb *vignettes/ADP-Ribosylated-peptides.Rnw
e1b5f5857c644c30e6ce89563b004530 *vignettes/PTM_MarkerFinder.Rnw
a6354dfd36a92d4cf246a3c9df060205 *vignettes/graphics/FGCZ_Poster_Header_2014.pdf
3a2aea56b674264b312415d929515861 *vignettes/poster.Rnw
62755a2907e9ec0bf978222614a99349 *vignettes/protViz.Rnw
5fa2a6b0a9c164ea389a54bbd360b5e8 *vignettes/protViz.bib
