a608b80ef33548cdc83181515337bb43 *DESCRIPTION
1457564521b14b100db776cab9424c9b *NAMESPACE
5e5c7521ce6a891d4804c3322878c10e *R/PTM_MarkerFinder.R
641de10c9c6b19b24a92971faea5427c *R/aa2mass.R
e474472ae1e9a38ba5d12c4f45fda68f *R/de_novo.R
9d1f99cdebb11e0b49c3b98b767b9879 *R/deisotoper.R
071d0e5dfaa178d1978fda0428fd4c16 *R/findNN.R
c9931c1f2b1a0bd2eb4b37868db20896 *R/findNN_.R
ecc561e9985b6436127d14b2c478d4da *R/fragmentIon.R
451317ef11b6a2f96b8694a36552047c *R/genMod.R
383914886d1596b45fdde36cd38553ce *R/iTRAQ2GroupAnalysis.R
7930fab3d0babd3a14884a285341909c *R/lcmsmap.R
6842712841339c3928f48636f8e54f7a *R/mdp.R
a952cd0c2a2c62d02c60c0a76e57f455 *R/parentIonMass.R
6438be22f048f3b790d76b4edd2f7133 *R/peakplot.R
c36eba240126b1af709dad766791c406 *R/pgImporter.R
15ae159f85652a791453d182cc29bdb6 *R/pgLFQ.R
1bdb82885d61c7ee79332a277f5a2220 *R/pp.R
c394bb4d63f3b430d55c7ac6ca32027a *R/psm.R
bf778c16d72f006d7b004d40e33fd18d *R/sysdata.rda
86c8788f5724da476cc923ea755352e6 *README.md
540db900f1953386891a01437c398f2e *build/vignette.rds
b3eb60488ed2accd254caaf83587dcd0 *data/AA.RData
a819498ade2469ecae934fb82fdd2e46 *data/HexNAc.RData
061041465a7f48b6d4b8d599d7b419fd *data/averagine.RData
4d8e938a5e8d2088206339a3da299e4e *data/datalist
deba21395c814a92cd784b78e75ae9f4 *data/fetuinLFQ.RData
7aa4ebd7e0eca3dc5b498b70c312c077 *data/iRTpeptides.RData
b28c2b18c19832a52fc4bc111d597911 *data/iTRAQ.RData
4e71b171521db0a207d6f24c93a07b80 *data/msms.RData
f34ac2878c53ede21ca52e06a1747fbf *data/pgLFQfeature.RData
7a2dde753a18f0c3900ba8387a304a74 *data/pgLFQprot.RData
89e559fa95cff4eb1fba43b2f597bf63 *data/pressureProfile.RData
12696f87fd68e71640e08d6596e2ed75 *data/sigmamix.RData
daa9c303936ebe822c0bfbebf6bd6733 *demo/00Index
d553d739fc6b78566ed04444d0a461df *demo/PTM_MarkerFinder.R
f45c1b16c999f2c36134eecadb373909 *demo/peakplot.R
e8e6de925245a465d2ac421ee0628597 *demo/pressureProfile.R
950fc7588fa2221d07ea26e4eb46a116 *demo/quantification.R
2e96a497a8a8a6c6f07acbe14f30ac92 *exec/protViz_annotateSpecLib_with_protID.py
670d6468c76929c27cc04bea7df18825 *exec/protViz_annotateSpecLib_with_protID_split.bash
006d9ad3aca2c547707fb572255bb9ad *exec/protViz_bibliospec2RData.py
386ed045a439e0339d35262e9d719450 *exec/protViz_dat2R.bash
ca2fe9383a60b3c8a0d63481dbf38f9d *exec/protViz_extractPressureProfiles.bash
6e56290871832dfca27d85b031322397 *exec/protViz_fun.bash
445006929eb20f78f61818fa48037c71 *exec/protViz_mascotDat2RData.pl
61612465d8709a41239b82546bdf8876 *exec/protViz_mgf2RData.pl
43b1b837a44e4473528a37c7781d44cd *inst/CITATION
270a4fa91b90872abcac93e30c21af87 *inst/NEWS.Rd
32499fd2711af1d578de0606654541cd *inst/doc/PTM_MarkerFinder.R
a8f3635f4663fe2c2bbd733dd709079c *inst/doc/PTM_MarkerFinder.Rnw
b7baf76b4a2d4194478c2de2357e95ac *inst/doc/PTM_MarkerFinder.pdf
b08f49d1bb0f4b3978f2fdcf161b8e4a *inst/doc/protViz.R
a85bb6ee6a45437f69da79468f5c3151 *inst/doc/protViz.Rnw
361b4a9195e6405c063f1a167dabc0bf *inst/doc/protViz.pdf
43e0ca2ed4068a2e676d87103611deae *inst/unitTests/test_aa2mass_main.R
77ec94c4f0e76139a081e98a27a1c5fe *inst/unitTests/test_aa2mass_main__verus__parentIonMass.R
160cd629849a1f616b961a0c51a9555a *inst/unitTests/test_deisotoper.R
8020a898ae401e6604de8f22f669597f *inst/unitTests/test_findNN_.R
b3fd9b4c5437d1b6e94e66176440d0ac *inst/unitTests/test_fragmentIon.R
3e54b239107ead34b9c31ad712f05c44 *inst/unitTests/test_psm.R
9e862547b1dfb45463a1e03e389b8361 *man/AA.Rd
7c991c49284819c1e7e26fb98c8fdd50 *man/HexNAc.Rd
9c7dc2862de59ae67d14c2103ea379df *man/PTM_MarkerFinder.Rd
23b1bc60ffd8529d3e8041b787656e99 *man/PTM_MarkerFinder_util.Rd
43308db08c425924502856cec0ab200c *man/aa2mass.Rd
489d35474a3d7cada544fe83b0edcee4 *man/averagine.Rd
b164fa16c5abdbd02328de98905ef623 *man/de_novo.Rd
73f831a090be3033cd3a452a44067663 *man/deisotoper.Rd
a61b49e4c574c28df134635ad3d3b0a3 *man/fetuinLFQ.Rd
82f534e54db0f4fe114185c5f5733437 *man/findNN.Rd
8f40a136d0cbb23143b2a97c277aae27 *man/findNN_.Rd
e57eee40e0f0e66062b970b1b430df33 *man/fragmentIons.Rd
3f2228152c2bb7caff29ea9e450bd78c *man/genMod.Rd
17dfd02637a460a2a333f75ca66e594c *man/iRTpeptides.Rd
2e31ca5b84385e4b4f73073444a22cda *man/iTRAQ.Rd
c849ce9d6aaac21264721286b0a618b1 *man/iTRAQ2GroupAnalysis.Rd
96b262e9ddd0a61ff47403d5caa71322 *man/lcmsmap.Rd
71c22b57ffb7789db6cb367f1e084d80 *man/mdp.Rd
3fa37904e15542a9d8047313c354b249 *man/msms.Rd
fd75f35f293a0e62ec5a2831daa3fe95 *man/parentIonMass.Rd
6f8377b644495be0cd292324b132c9bd *man/peakplot.Rd
a41003b07860d285e922dfbfaded7fff *man/pgImporter.Rd
94216a2c8bdf765e9c6a2acb305101cf *man/pgLFQaov.Rd
90160c4ae4961414e36744d72b8f83bb *man/pgLFQfeature.Rd
d5868088a1788699f969461527899b27 *man/pgLFQprot.Rd
57487772317b6f64a97db714173e7cb4 *man/pgLFQtNpq.Rd
8cee211c76eec2b80625377908f9316f *man/ppp.Rd
e73d6869e195acbe8c372b2213772f3c *man/pps.Rd
4ca6d1cf44e7392671a03781f3887f2f *man/pressureProfile.Rd
1e67f5c69c7aa92cb1dfe868cb86416e *man/psm.Rd
28d384da9bab5fbbf5c1ed73bb6393d6 *man/sigmamix.Rd
b11064344021f69d555348efe2916ea2 *src/Makevars
95839cb7a54933126578c8e51313b81a *src/aa2mass.cpp
7ed16d8640f6152e015319c911fb3a07 *src/base/chemistry/iisotopeenvelope.h
efae8513d316cc1b04f373bb921823cc *src/base/ms/deisotoper.h
77986b618519e5e1c413a7bca8040378 *src/computeFragmentIons.c
fe61c67e26d3b61e6c93fc19c1f6d33b *src/computeParentIonMass.c
9007e5c3aba69100c454693baa6ff556 *src/deisotoper.cpp
08bf96dec9f8910f5e301d7fca7cc20f *src/fcat.c
50f41d103f47c0d924730fae42186765 *src/findNN.c
7e05c6183a042c31730b091af190f3ef *src/findNN_.cpp
2e35dea87627fbfa4bbca0cd161be4d8 *src/protMass.c
75f3ba46f2e925198b12edf3a8d73f5d *src/rcppdeisotoperenvelope.h
42adb67f2cafa7634115ec6edcb8454d *src/tryptic-digest.c
868765044bc32c775d787e37ed57fb6a *tests/runTests.R
a8f3635f4663fe2c2bbd733dd709079c *vignettes/PTM_MarkerFinder.Rnw
a85bb6ee6a45437f69da79468f5c3151 *vignettes/protViz.Rnw
389e1eb3e1ceaee3b6ab9010c17c04f8 *vignettes/protViz.bib
