9b83c4aebe539687cddb0ae972d39ccc *DESCRIPTION
40fafed54758ed9ea7d309a4abb8a294 *NAMESPACE
1bb7bdec684eb8485859b09b9df38623 *R/aaa.R
c9ac1fccbd75cf8b05e369331dbd1da9 *R/basic-probes.R
2b1198f71f2dda4c7f3ae058e77d3706 *R/bsmc.R
4ffa2a16494e3780646d1adb15cfa5f5 *R/bsplines.R
8c5bc0c8e37bd5a4d20d9ce10bbbad55 *R/compare-mif.R
3cfe018c21246c259cd9464d82196782 *R/compare-pmcmc.R
a39b69bd42676c6996d606311153d10b *R/dmeasure-pomp.R
e4482570de6de2c14844dca425899db7 *R/dprocess-pomp.R
c7269ce0491f6e78f9599cd4937b00bd *R/eulermultinom.R
02762bdd76442c2c4b123cf505919766 *R/init-state-pomp.R
41ae3ff855375751582084e7f197616c *R/mif-class.R
856c409e13352535609973568c0d02d2 *R/mif-methods.R
b7588354d7628e598e629035d3a9d0ba *R/mif.R
090375e09cb9dc99c1ec2c2a12721686 *R/nlf-funcs.R
72297f5f562e38302f9bef6e286e1c6d *R/nlf-guts.R
3471a1449675b1bcd7f387d0d5aeac69 *R/nlf-objfun.R
33f5e10e3f3d4b394c2b2774f82e0a19 *R/nlf.R
88a9ffc10f527f2b90500489f6bdd841 *R/particles-mif.R
ea99349a23362d15c245c46d7f53e514 *R/pfilter-methods.R
5813a8f99e2260d30448c9221f716821 *R/pfilter.R
3c41786b5db5cf6559de3207021095a1 *R/plot-pomp.R
747c9b3cdb736d850154fda5b3972cc7 *R/plugins.R
9b14044f6399bda0154581c01dcf308c *R/pmcmc-methods.R
1d7dba465fbf55dacea25e432ee925d7 *R/pmcmc.R
837440d7f6f74756fca0517e3307f684 *R/pomp-fun.R
b6cf2c6ce0bf1e76c618ec64d4bd4b37 *R/pomp-methods.R
651c2f7cb2438a85f3df0dcadb6990b2 *R/pomp.R
1582e6c2ebd8b6f3c7da0a3fe3cde097 *R/probe-match.R
a14399d0bb52048345a376605052a0cc *R/probe.R
c95e8f76abd598608c24a59c9e9e0218 *R/profile-design.R
6b0dd7744067fefd9629a0e7890d98e3 *R/rmeasure-pomp.R
68df02325736a7f6dbb3e3978faeabce *R/rprocess-pomp.R
44fa62ffa56ca455570822d9382f5747 *R/sannbox.R
21d954d1020b5788f741f219bd126c54 *R/simulate-pomp.R
4b2e5535a07f5493cb4378efcab29971 *R/skeleton-pomp.R
750b8bd2c5de0f0940e935ae6e89d378 *R/slice-design.R
495082816884f1638fc9f2b22791912a *R/sobol.R
77ef7942738c07b437a3b53dd5f3e660 *R/spect-match.R
122e0a96567833df6f31a4c649440e42 *R/spect.R
fc453fe2af2b44e7abe5d467731c5d5c *R/traj-match.R
01f3038c04522331ebcd48212fc2c9db *R/trajectory-pomp.R
6db58ec51cba917b78bdc1f08730cd15 *R/version.R
5602f7b63c387fd9c9c3faa3949fabca *data/LondonYorke.rda
8c3a472e326ba11dfa3ea52f0eb04916 *data/blowflies.rda
2d994b3fde5aeef26c74f1411533696c *data/dacca.rda
b6c2f7d597083c7858f302500910edcf *data/euler.sir.rda
f5fe847dc6c8e353a47e245f51ca967c *data/gillespie.sir.rda
d519f6b2fd9b19d9e3f111c63a65f925 *data/gompertz.rda
4fe93bbcbdcb2b9fbe335df07701b7ca *data/ou2.rda
2217e43c2b7bf19b9599e6ac14d9e4d1 *data/ricker.rda
43f107ce6b653a024c78b660dc6b6132 *data/rw2.rda
d83961d9f979f98df8918b6ef5d630d3 *data/verhulst.rda
84f6694af5901c42cd8345748c2ab85c *inst/CHANGES_0.29-1.txt
d31d366b9a67de70155edc454b561d0d *inst/CITATION
e0b18687b30086d80bc384a71c5de8a8 *inst/ChangeLog
37483d9025577e53130dc59df034c53f *inst/GPL
6c9a81cddfa5cea615df33461453dfd6 *inst/LICENSE
92e9854aae83b0a06eefefd38991ef06 *inst/NEWS
ae883e3c49ec6386c290ec2314b2781b *inst/O_CHANGES
6ac356e6420ff66aa555b431ced2a12f *inst/TODO
e8f2185f80eadcd22d4a0e5aa02234c0 *inst/data-R/blowflies.R
4494fb2210540fd1955da2402564facf *inst/data-R/blowflies.csv
0336042d687d69d59fb9f402d58b0e8c *inst/data-R/dacca.R
b209f7db3ac15d1d28c039a2564a007c *inst/data-R/euler.sir.R
d91ca2506822d46393f57a8a48cdb9ba *inst/data-R/gillespie.sir.R
87db3651ed25ca5a3d4459130232526e *inst/data-R/gompertz.R
b604b8d67e4b7aa3e5442d948230a731 *inst/data-R/ou2.R
db3bee5e1d3f8835a3b4982a4e67745d *inst/data-R/ricker.R
41a6efac8375d6ab78b8ce52af2a8f5f *inst/data-R/rw2.R
9cfff2622d20185f6e5c26e635a92f9f *inst/data-R/verhulst.R
a77b40aa6c42c7c8f640ca265cc4b434 *inst/doc/Makefile
6d230e855f9c048b2dfd01072cc032b8 *inst/doc/advanced_topics_in_pomp.Rnw
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9bc0a6a152ccb569604de97f7d9b848a *inst/doc/fullnat.bst
392c88fa0f427d8acd6bed9c2b745bee *inst/doc/gompertz-multi-mif.rda
4f609bff9fe1376b5453ceb77be1cfc0 *inst/doc/gompertz-trajmatch.rda
2cd20e57bd8883ec6b95bf1ae7303b5d *inst/doc/index.html
49e4dca2310b239bff9121eda67b05dd *inst/doc/intro_to_pomp.Rnw
6701fed7b3cd0def8668dc06cdf3d718 *inst/doc/intro_to_pomp.pdf
a36581cbe08072e49b482d98beb607d8 *inst/doc/nlf-block-boot.rda
e1d491eab0ca04582a85b0a06d8b8e4a *inst/doc/nlf-boot.rda
e6e50710e3d7aa0b52f1ebde77c7f730 *inst/doc/nlf-fit-from-truth.rda
f67e49f892cb7c923a28f4ddf7454496 *inst/doc/nlf-fits.rda
4536196ddd999987a2062d21daf74f53 *inst/doc/nlf-lag-tests.rda
bfff729fc08a1210870e255c599d2493 *inst/doc/nlf-multi-short.rda
34dc95fb715d85fa425638830119faf5 *inst/doc/pomp.bib
d5cfb5660119ad69de43039380a661cb *inst/doc/ricker-mif.rda
ee3b1f1e0da0893cd1474e9fd1d1724c *inst/doc/ricker-probe-match.rda
e2257294693af7e305d1b9987da96665 *inst/doc/ricker-probe-plot.png
9e5908d552b601671941beceff264f99 *inst/examples/gompertz.R
deaa4e225acfa5dac3510507633dffc5 *inst/examples/gompertz.c
bc103ea8e1e571b34b85054831187ca1 *inst/examples/logistic.R
87a51cf576fcf47200219d87038ecbfb *inst/examples/ou2.c
ee931a344c7cec84ff725f2a4ebcc8aa *inst/examples/rw2.R
ace7e7e77ebadba865c4005ce8b5d1f9 *inst/examples/sir.R
b1d24a68797c548009353c9ed65487cd *inst/examples/sir.c
f3af301fa09f77d0e97fccd44ccf03e9 *inst/include/pomp.h
47657972b53d9002af71ad7778dfcc32 *man/LondonYorke.Rd
c4df728c46442b7ca7cd9a6a1f726aa2 *man/basic-probes.Rd
b1a6394ef522f500fb9131e947aeaef3 *man/blowflies.Rd
b5b39b14fe712fcb366094101842f63d *man/bsmc.Rd
ce0541c2add59559bb19f3b2ad78622e *man/bsplines.Rd
e60089d559a99dcd968c22d916abf112 *man/dacca.Rd
6bc92e825445e45e68491484cec99b1b *man/dmeasure-pomp.Rd
f3c03a19d4308bc691c4b4d11f9c81c9 *man/dprocess-pomp.Rd
947744a4ef0738e348e4e5bd1c2525d8 *man/eulermultinom.Rd
c8d83cca78cc9ae47d4da2eb607eca6f *man/gompertz.Rd
bdccf13a1a2753e44528cc0d6b19a1b0 *man/init.state-pomp.Rd
77c318294c5e7cc19a90fca138de5fbc *man/mif-class.Rd
b3e4e67e87cf4b71607fbb40cd0a6d3f *man/mif-methods.Rd
23e5badfd9f9d57a37c8a7f8b856a92e *man/mif.Rd
c6813b80d10106c80b8c46c4983d0594 *man/nlf.Rd
fd1481272448fea2e18db2efea285f98 *man/ou2.Rd
6ca74fd6c08d567ed7496cfb3f812608 *man/particles-mif.Rd
e37c29ddbafa22908ade1fc9acc10f4c *man/pfilter-methods.Rd
b066c336b31900bf7a7c1d27a2309fcc *man/pfilter.Rd
320911f4b12e02f81809fc3a1c963ede *man/plugins.Rd
503ef97458fd3ec0f2ee897d4e88ab3c *man/pmcmc-methods.Rd
ab55a3a5688f051f39caf93565b48b65 *man/pmcmc.Rd
3d90585ece612f43ada7208ad97d1fa7 *man/pomp-class.Rd
a7671a478931d38433f5f491f2ce4f6c *man/pomp-fun.Rd
e6cd735a902e386e12d09118d126f5dd *man/pomp-methods.Rd
2d7e6d9a9cbbce64e9c28b4f25c5adfa *man/pomp-package.Rd
ffeacb959b1c0c006c1b928e5820027e *man/pomp.Rd
e1ed8b8f3d896a40b9cbadeda8b96453 *man/probe.Rd
3548850e45707fc2bd06c0f8d2578956 *man/probed-pomp-methods.Rd
046c2719d36f4ea19dc735ec30c0e7bb *man/profile-design.Rd
764aa904d21e73695d3e58dbb095a69c *man/ricker.Rd
ec90ed9e912d2e74eecca7221f6013f9 *man/rmeasure-pomp.Rd
5076820a428487319e3c07cd7466c4b4 *man/rprocess-pomp.Rd
a622775bf50e4acfa26eddbbaf7f6489 *man/rw2.Rd
abf91d698a7e28ef09367c3b2499adc8 *man/simulate-pomp.Rd
a0b792c1c8f168b8acd736334409b7e4 *man/sir.Rd
63b6399361a5768bfe283acf1f9aa100 *man/skeleton-pomp.Rd
f5e792845f110c646aae745aaadba67f *man/slice-design.Rd
9bf8d8b73311cf50bdc37c1df0e5d73a *man/sobol.Rd
e23132cdb1bd4c1bd44549548bfa8ec2 *man/spect.Rd
ddda7ba42f8dae8365d0cf49606fea53 *man/traj-match.Rd
6a10046e28e5ca183473bc43d54e0978 *man/trajectory-pomp.Rd
bd7cab33f0bae03fc1251b7b5df95d97 *man/verhulst.Rd
44374e12ccddbc8b95f5e20202a0687d *src/Makevars
eb6ec7176cea6424cc3c97b07a0e2479 *src/R_init_pomp.c
dc1d0f02259d01fa2df7f4d242942aca *src/SSA.f
0c95957601b470695290ab2a2639b829 *src/SSA_wrapper.c
41387cedde7a64259060c3595ecba6e4 *src/blowfly.c
dd78124ad960a695ba72220eb49315ca *src/bspline.c
05b1cdfcd71410fe390a016b5eebe454 *src/cholmodel.c
7b874c5ee10f8ae106307bc6eb6689c2 *src/dmeasure.c
a0b8ea8bb8719a55b74cdf7c31b314fa *src/dprocess.c
bd100683f5548149fac0a2245cc5ff00 *src/dsobol.c
7a3958e97bda6a7f775973f7df577ba2 *src/euler.c
2a3ffa6d8ef3f4987ba36acd52afe178 *src/eulermultinom.c
90779792e6b002473f0c0c7e1f87bea8 *src/gompertz.c
8dfc9efc7eb734ee22b8d38314bf290a *src/initstate.c
a6d148405c2578eef8d172b678383c1e *src/lookup_table.c
2d1118d10ed9f67e5c6c137b0180fa7b *src/ou2.c
8a86c0071e98b20c736424e1b574e6c3 *src/pfilter.c
f3af301fa09f77d0e97fccd44ccf03e9 *src/pomp.h
c2abfe187fb557ac7824a45c96e60df1 *src/pomp_fun.c
6e4d53a46e0845fb68bd5d2b89e75ede *src/pomp_internal.h
5e2210aa36334af59cfa73662f0123cc *src/pomp_mat.h
29dfb8eac6ababa718ed6d3ff1448a1b *src/probe.c
94787afa9f03c321d2b4d6de57d23f65 *src/probe_acf.c
712280f08d74144816b3b120d8eeb5cb *src/probe_marginal.c
2f3fa99c841f11417e87dbf1e7ba223f *src/probe_nlar.c
973b1fb191326c40a05e5626e68a5df0 *src/ricker.c
90e59362b6c1e16bd52fde1b15165168 *src/rmeasure.c
36cd2d05900b9986e0f2590abfef0969 *src/rprocess.c
9b26dad0b81e41cae4aaa8e87991a8ff *src/simulate.c
96804ec57b131bb357a4e4c0ab2c7a4d *src/sir.c
35095afbaad4e463ddd973fa86a3f955 *src/skeleton.c
557ce952eed189a3610f2bb746b08a45 *src/sobol.f
64d6159c656724f3657e556d828e74e3 *src/synth_lik.c
c4efcd54a21e78de0103545150462548 *src/trajectory.c
13f807fe6273d10b151e462470268a3c *src/tsir.c
e062943c6d20a5eff6bcb6ca9e4e4367 *tests/examples.R
5abe157b36c03d5b37e545583bfe8cee *tests/fhn.R
fad3de3221c8d0c1bdceeb7d2be4d8b1 *tests/fhn.Rout.save
c4fe2c02835d555258a1ad84eeaa9c66 *tests/filtfail.R
713d35c3783e18995f3c02023a9765f9 *tests/filtfail.Rout.save
65e47dcaf8551b004bb6cbde732a1ab5 *tests/gillespie.R
476946660bf34f209a884e316706b1aa *tests/gillespie.Rout.save
58233702335afb89757de19d2c664bdd *tests/gompertz.R
3a8e29c03e174964b19bad0560b4b36f *tests/gompertz.Rout.save
bc3116906c4625da29e0e48eeadb37bc *tests/logistic.R
b74e7b17094c2182dc543be5dbec9a0c *tests/logistic.Rout.save
202f70d0e1c5133849546a10012dea09 *tests/ou2-bsmc.R
206aeaa60c50e62a89aefa2fc234c655 *tests/ou2-bsmc.Rout.save
ff208892e4f4f19266d5241af4aff0c0 *tests/ou2-forecast.R
957affe16a2af190c510c65ffce299c1 *tests/ou2-forecast.Rout.save
4029c5ef8501170c0e4fa556af6a5811 *tests/ou2-icfit.R
a2bb460591500889c3aeba08d1035c80 *tests/ou2-icfit.Rout.save
d6aba4e85a41e57100a10e257a5fb26e *tests/ou2-kalman.R
29edfc5af75d051b94f1a7c6c3483b54 *tests/ou2-kalman.Rout.save
9019e5b27962da8420d87e42e92f3378 *tests/ou2-mif.R
c9ef38e7ee8a1de0f5eac9df4798962c *tests/ou2-mif.Rout.save
cf0619a6ea99da9136612a444366f1cf *tests/ou2-nlf.R
d2190f9cd1932d108d9500810d014a0c *tests/ou2-nlf.Rout.save
14eecfc997bfd0f54b862ddb7040f28e *tests/ou2-pmcmc.R
d9a6663dbd6d593e719bc9cf42e2f46e *tests/ou2-pmcmc.Rout.save
1ff0e2f7498b35a7ff0f9b6e530f4563 *tests/ou2-probe.R
7dfc2425f8dd6b9431b898cfd33125eb *tests/ou2-probe.Rout.save
f1e89ad798301c283a5c7086835dac1b *tests/ou2-procmeas.R
34fee8675c27a193eb635a7be06d0e68 *tests/ou2-procmeas.Rout.save
1fbb6613fad4dbf4193647d3c5e3c394 *tests/ou2-simulate.R
6b3dedc9fa6725dba979a058a0705ed8 *tests/ou2-simulate.Rout.save
51a80d978c838e1ac652410eb1f756de *tests/ou2-trajmatch.R
a2125108eb9b9ce7922e0414114cd3e2 *tests/ou2-trajmatch.Rout.save
15b6092014a7350da9dbab27014a4fc8 *tests/pfilter.R
c5ef074432363c1443440cd2a08945c7 *tests/pfilter.Rout.save
a27d05530f3a89f4056f7886292fbbfb *tests/pomppomp.R
664be2d884a1f6d27fb097ecb1c89f5e *tests/pomppomp.Rout.save
9fe29cc68306ddcc43e7d56a67663c85 *tests/ricker-probe.R
81f21abfa08f5c321e462a627042f978 *tests/ricker-probe.Rout.save
6ad6362c46a9e236efcfbb2078c614f8 *tests/ricker-spect.R
b851068d82128b46c509b8ae3ca79975 *tests/ricker-spect.Rout.save
d2cd94fa1a9761e24be49079b03ec031 *tests/ricker.R
8ea4fa48032471f12c0d068a067a8121 *tests/ricker.Rout.save
46124632e42d985ce297972702677855 *tests/rw2.R
8ea4c2c76d88b85ffea19c183f628e0d *tests/rw2.Rout.save
487e22b18690ee9f1ba74c76d9439896 *tests/sir.R
ffcd501c2a76f2c80784ec9b0fbabb4f *tests/sir.Rout.save
4ad9eedb7974f8a9befd5c65db12de81 *tests/skeleton.R
148b57fde65f6cf7cf0b9fdcc2ddbb7f *tests/skeleton.Rout.save
abebe4825f6b5a405750e7fc85e7aa75 *tests/synlik.R
c4c074a3c4df7b7196d25e50d3ec683b *tests/synlik.Rout.save
f072ef2f7940aba7f03d41c6e8a2f635 *tests/verhulst.R
c889612d78c941504ecea51787ee31dc *tests/verhulst.Rout.save
