7da19cb3d85878aff0264ed2221232d0 *DESCRIPTION
a4454697c4f6e793c64c094668e954f3 *NAMESPACE
6b0776a05d22a6a0e851cba157883b45 *R/add.everywhere.R
ab83760e8b04218ecca3fda0990b97c8 *R/allFurcTrees.R
a118f868d9a5e3025ec4887296da1a59 *R/anc.Bayes.R
74026bdc4881ca0035541dbfb959f686 *R/anc.ML.R
56b85f7aa49584b6aab2cc75a4232077 *R/anc.trend.R
cbc7784cba23e6b20efe0f2d21e1de3c *R/bmPlot.R
0676ff6e0a9c20313ef37088dcc65a63 *R/branching.diffusion.R
3df01fc219119f44820bba364f87294f *R/brownie.lite.R
e092561f7dba01386fe102a08a8024a8 *R/brownieREML.R
b707fc247b889daacea864a75e0915ed *R/drop.tip.simmap.R
b89f16fe0fd9f3ece78d8d0c83d63d35 *R/estDiversity.R
803441943ada9faf3fa4c637a34c816a *R/evol.rate.mcmc.R
10011d77713c396305dc6a575eb28d71 *R/evol.vcv.R
f882c92e9fe543289287139735677656 *R/evolvcv.lite.R
7935179a771ca9af09050678e76d8a9d *R/exhaustiveMP.R
9894f4104c7750ce0613c2794262d447 *R/export.as.xml.R
2b146adc0f6bbd5cb67b955c1c29b86b *R/fancyTree.R
bfe9d45e7a126e26d4ea0c10e7851350 *R/fastBM.R
0d3ae4cfb0e9fb73cf0cddc37d8d0fb7 *R/findMRCA.R
79d5c1bc8b38484815275308c3aa01d5 *R/fitBayes.R
984fab2bf406a04876c19b8d4d6e4ec7 *R/fitDiversityModel.R
845b53ce3f60f6ed7d3728a67da0ecfc *R/getExtant.R
1dd29274a867dc1643a706f932bb1c82 *R/ltt.R
1a57f7ae8dcf530cbda30b282d513aa0 *R/make.era.map.R
608ede966296989bc8aa761f5c0ee6ce *R/make.simmap.R
23b9e915f9fc8b9c46d81c573afbbedc *R/map.overlap.R
bf6c23b046ed30ee9e9183582aceb070 *R/mcmcBM.R
659b234e9ff4b00daa511a06f72d53d2 *R/mcmcBM.full.R
7df014dbaca615bffd546e1b12ed9d13 *R/mcmcLambda.R
67b1c9912e65cddab14fb9c67f28eb19 *R/mrp.supertree.R
bf754d944a21c90497cb138df44f215f *R/optim.phylo.ls.R
0b19d29fa65397271369da28cb33ab6a *R/paintSubTree.R
e8770dd2a3a586983f9ad3312f15738a *R/pbtree.R
75f9ae5bc0f9f617d33a8301a65ce8cd *R/pgls.Ives.R
e8c1be82ff5987dda425f2cf6f9c1965 *R/phenogram.R
d9c8a79aa3e30d266ddbfc79e192e87a *R/phyl.RMA.R
d98d7bec0847aa686ef9b37b044489bb *R/phyl.cca.R
0d64f29449e03cb398815022e3f3d022 *R/phyl.pairedttest.R
c9f68d7c48ed3961941c58d5059404e3 *R/phyl.pca.R
6eb0e229b575c66b578eb9e3de320e4f *R/phyl.resid.R
f1fe30a068d21211aaaa2f18c242b632 *R/phylANOVA.R
0df6241c5cca6db4a5ede9a254dfcba6 *R/phylomorphospace.R
509b3b3794659677dc30cf7a8d8142be *R/phylomorphospace3d.R
2771f0713c2aae54eb30ea78096f738b *R/phylosig.R
8c78bb12e9560738b4352d0635c63e9d *R/plotSimmap.R
6682ad12346c2e48fd749c038d70c91c *R/plotTree.R
20d93417514de8d6caf78fe4f71fc33d *R/read.newick.R
1e407635f553c7f6d95df99024f3199a *R/read.simmap.R
5109e8b0fb8ccfb68c9d8a71947f8cea *R/reroot.R
dff7888f77ef074d81f61822f677015a *R/rescaleSimmap.R
afe6e31be39046604a479f8180ddb100 *R/sampleFrom.R
c8ec5d44f539afb96b494c5557dcda7b *R/sim.corrs.R
9e907ae06d36a0aa47c98756be6792dd *R/sim.history.R
a453f93ced9541e58cb109e2f0520acd *R/sim.rates.R
c8bfa07dd3238d97fcaafe5a369e5e89 *R/starTree.R
ae99c9aeb8f0553d3addf1475ea35562 *R/threshBayes.R
a38bac98b4681cee859750b8193a9a9b *R/treeSlice.R
354e15b84a5012e6812b5443cc90e5d1 *R/utilities.R
cd7160d2d11a91be2d6531be04221f68 *R/vcvPhylo.R
f8b9c547e0cd28c52e7a2ba438e9227d *R/write.simmap.R
a78ed25ad6214b1722858e7289d3d3b5 *inst/CITATION
3d02c3b15680c5a5f876d320cb2c1b9f *man/add.everywhere.Rd
c4dc67d1bae83a1173f464be4bf4b8a8 *man/allFurcTrees.Rd
71c3cfa0a73f64a4df181ce9f9fc22df *man/anc.Bayes.Rd
6ebf8982d158fe718b511638b302f405 *man/anc.ML.Rd
40e07815e48cdbcb808482093e9bddba *man/anc.trend.Rd
46d86e34928e27c8ce0e3bd5472a1302 *man/bmPlot.Rd
982a49da3b8f0df6cec71d67733f3232 *man/branching.diffusion.Rd
02e8101ab036b31967c598a34f98463b *man/brownie.lite.Rd
fe880e9b323f5d89a5ece42b62e46a24 *man/brownieREML.Rd
e0140040fc0a745c220a940bc07d53d8 *man/drop.clade.Rd
0706c5c5ca0cf29bb7c1e31efc1ae036 *man/drop.tip.simmap.Rd
5525ca5efa6cd30507ee300262e78fc6 *man/estDiversity.Rd
cdc634f033200a1754ac6e209a358e17 *man/evol.rate.mcmc.Rd
a6370cea85d483ed2e536deb2a620fc0 *man/evol.vcv.Rd
7708545f97d80a93fd085becfd1f042a *man/evolvcv.lite.Rd
202d3f85fc00ae839d081eea67cb39ef *man/exhaustiveMP.Rd
99aa2f3b5bad4e815c0b719ee2bba455 *man/expm.Rd
2a88958c386115eb97f161d81e32c658 *man/export.as.xml.Rd
826adb043b39a546e382db76b81529de *man/fancyTree.Rd
0ce8222623c77d196ab9fd9a067487cd *man/fastBM.Rd
8968146c16fee42f626413b3ea9a05de *man/fastMRCA.Rd
38cb2bab85a2f2c9a2f5feb7e0905dc5 *man/findMRCA.Rd
739705068b603eb9b7ffdacbbe34fca0 *man/fitBayes.Rd
e0a067d6cfa93e45f04ab8bd5383a866 *man/fitDiversityModel.Rd
35036b3bc42cb12a62b88502794463aa *man/gammatest.Rd
e32a7fbe9d3cc0e90d950ed35b271a6d *man/getDescendants.Rd
0b513d1ec1c87cf060c5bf405af44519 *man/getExtant.Rd
ab4ad9b6a66c2d1acfde4b06727a838b *man/lambda.transform.Rd
a6f94b788df3eb7c2384a655ac42923f *man/likMlambda.Rd
fac4d356b548204376659906218dcf76 *man/ls.tree.Rd
892837f37c224bffe0f9e487ce9da581 *man/ltt.Rd
1231d92a88e35fde7e46d55a77ca10c4 *man/make.era.map.Rd
3e37582a8a607547b0f3e73d113da0d4 *man/make.simmap.Rd
22b511362633460c809743ccdc82b376 *man/map.overlap.Rd
c77ccb8a4fa938dba2fd3ef9ae9c4022 *man/minSplit.Rd
19ae550129e7685844f9d4b2c830ea6d *man/mrp.supertree.Rd
addc81cdf4c97c420568d3a129cfee79 *man/multiC.Rd
aa96e4f79c6603541eb266e7851836dc *man/nodeHeights.Rd
4fdf722929e8292c9c44f3d038a89c2c *man/optim.phylo.ls.Rd
4f9775c5b1684a65d49431f384ee7c68 *man/paintSubTree.Rd
106d977d4be09f77333bba867990c2d8 *man/paste.tree.Rd
53b4ce7db45df914dd0e8241a3214a64 *man/pbtree.Rd
ee1fda2db14c2f5aa203c618139ff349 *man/pgls.Ives.Rd
b1ce00cbf5d70b6479e26321ca45b3cd *man/phenogram.Rd
916ef0d25243505d0044c71b75a09935 *man/phyl.RMA.Rd
f0a7909edc54f3db618ff83929146591 *man/phyl.cca.Rd
9e5b8caebc40d13c60eeaa32482ed2c9 *man/phyl.pairedttest.Rd
c10217c9dac29bbfec501aa70f7bbde0 *man/phyl.pca.Rd
e008b85e1b78d1ee289c7de6b5982775 *man/phyl.resid.Rd
9f348009c6e3264a49fbde755db8ce7c *man/phyl.vcv.Rd
a21e744bed5069af78a7a75b6b826038 *man/phylANOVA.Rd
2e39afb0137ae8c1729ce04491f6ae9f *man/phyloDesign.Rd
c18e4a2303353313408854ee8e0ba0e2 *man/phylomorphospace.Rd
b5d31f478aa0edf985bcf540664d1737 *man/phylomorphospace3d.Rd
b42982e4624dcea59e1c94faf3c84a1e *man/phylosig.Rd
f5d40108e3f07ffa9cb8f3a46d45dac5 *man/phytools-package.Rd
03dec4a593a5bdcb4a13d33a5d9e9935 *man/plotSimmap.Rd
d2933ff57e5f63368e5d86816fd10654 *man/plotTree.Rd
96aa60eb7ddecdd328a046bdf518d4de *man/posterior.evolrate.Rd
79332ab5d9573d5d739ede5cbc532c4f *man/read.newick.Rd
8efc2eaa6ec66b09fb4776f13bc2ec66 *man/read.simmap.Rd
70e738425bfebae30c367f095e7e4510 *man/reorderSimmap.Rd
1b264425b7aa37b4eb765f9abcb6a3c5 *man/reroot.Rd
beacf18abd46d0530c14e59d173a1e13 *man/rescaleSimmap.Rd
64481885746963d3a93a53e9faf5be6f *man/rstate.Rd
578d77f709fd7490ac1ba8c25bf824c7 *man/sampleFrom.Rd
309c5efc8b9536025982c0f5037f8f30 *man/sim.corrs.Rd
83482584122713b652af6a2f66d53d43 *man/sim.history.Rd
4f0c26df90382695bec983865d4f3139 *man/sim.rates.Rd
0291936b3c5c14b99061584b53058317 *man/splitTree.Rd
db74e0845065f66f0f84f58a52ac6535 *man/starTree.Rd
0cc15269a45b6719ba7cb6ab759ef910 *man/threshBayes.Rd
96a5118007a028c02f959adfff601a3d *man/treeSlice.Rd
c5dd76b56010365472255ab740a13e52 *man/vcvPhylo.Rd
7e06e41126b22c93c0797ff277d5804a *man/write.simmap.Rd
