3aa17cf795d1eaf5804fe74e2361feb0 *DESCRIPTION
808b616dc9e010a542d4c8e7c47d16ea *NAMESPACE
945899cb9734386fb759a1cec6872023 *R/RcppExports.R
2fc48247098f6b414c49d68a951a8c4e *R/calc_rel_contr_node_time.R
3eb47cfb3d51d592e2cbe9f9da8804fd *R/calc_summary_statistics.R
e2d2c4563f6ac5020f98c8e6df76e753 *R/count_hidden.R
99ecbe09592b4163a3e2bd2ef6775e6e *R/create_equal_alignment.R
d147dcdb9abf0f3b585c7a79c264d3be *R/create_equal_alignment_explicit.R
6fd72e8b66621f8082ff0d8c8e1dea8e *R/create_tree_from_brts.R
3ccf028d58f7d0df953e78ca00a3c3ad *R/estimate_marginal_models.R
a59d1d74c9377698628b7f683539f024 *R/infer_phylogeny.R
52137fd9530d69f66351076fbf94249f *R/nodeSub.R
7b6118423263f5d9b73650d25e420b0c *R/sim_linked.R
f7b953f43bb839c342d0b7b4a6baffd2 *R/sim_normal.R
181e4b205115e8d7ad0b92a91e8a3159 *R/sim_normal_explicit.R
d82145446601ca2ed425f892f12b89c9 *R/sim_unlinked.R
553d4cbe152c9a8de01d954b9139d0f2 *R/sim_unlinked_explicit.R
ff38d3c3a7cfe8a61595ec5a45910d25 *R/util.R
7fce99e8d4b12ca9333092dd53989028 *README.md
f6b770a3fb70ce615d1c61c73e03d3df *build/vignette.rds
d8e7ef0639f807e0f38bec721f23ab6e *inst/doc/substitution_models.R
297d8ae17b2504dac906f34bc4179d7b *inst/doc/substitution_models.Rmd
43cb83a2e80ab132e5df59208c973a6b *inst/doc/substitution_models.html
ec387ee5883c7489bf35581a2cdda847 *man/calc_expected_hidden_nodes.Rd
caf4a8d71be515953e2a68ae0d46bbf0 *man/calc_fraction.Rd
935856feb63a63c9c6fdef7bc8e3cd24 *man/calc_required_node_time.Rd
e58ea1f06d0193fcf0e74c8bdceff7fc *man/calc_sum_stats.Rd
e01fe75d593ebb20ea259f6d6a50921a *man/count_hidden.Rd
a7881357a9ded1dba8e238754055c928 *man/create_balanced_tree.Rd
f5de7cb355a4ae07a02aa2cc12a586f0 *man/create_equal_alignment.Rd
9adac0e45cf8c294d7f835cf8f0c6985 *man/create_equal_alignment_explicit.Rd
60f23b4a4a4963dc59e4bc2d3324dabd *man/create_unbalanced_tree.Rd
4469319fc9e52cd4bf1b8eea355c27bc *man/estimate_marginal_models.Rd
b8dab776d3973ef7d9d293353462af0d *man/get_p_matrix.Rd
74a32a0bffca261d8c9376dc96dd545f *man/infer_phylogeny.Rd
b78d89301969e344a617656fead5f1ce *man/nodeSub-package.Rd
5ed90a743b2f3f5826f1a4e1e86003fc *man/reduce_tree.Rd
7dc8377e389281646fb18b7486782bee *man/sim_linked.Rd
7a420eee550ea3939f8b299eb2c366a1 *man/sim_normal.Rd
467d1633c78cb15b9a306e9da7090786 *man/sim_normal_explicit.Rd
116e39c5c90b0f4abbf3dd9fe20e12d7 *man/sim_unlinked.Rd
661b94987cc0451201517a4b7e984252 *man/sim_unlinked_explicit.Rd
10341c20b273960ecb2b895cfaa7d017 *man/slow_matrix.Rd
62f108628677b8aea0695a5394428896 *src/Makevars
305a4533ae0564e530a79b3a1a016c80 *src/RcppExports.cpp
e9b35454d4db6a5161b6c22ae604cd46 *src/getP.cpp
ff2461c90b87f34f33c0725fcaf4d8cd *tests/testthat.R
743a879c18fda0d2a245762b8cd2ea6a *tests/testthat/test-calc_fraction.R
d4c5849893879d1c489a97ab4599a7a1 *tests/testthat/test-count_hidden.R
e2620eafc884b5b5d45d9d26f4bec256 *tests/testthat/test-create_equal_alignment.R
2865f6f2cb08bfe4d24889c348276fd0 *tests/testthat/test-relative_node_time.R
6fb8fb10dafc94b424e2c9f01959b2d1 *tests/testthat/test-sim_linked.R
3d860573ea8ebbd33d555fc366b7e0bd *tests/testthat/test-sim_normal.R
4e32cf12cebe695cfb93131aab1ba0f9 *tests/testthat/test-sim_normal_explicit.R
e004cf4be87ddb593f9092aecbc306ae *tests/testthat/test-sim_unlinked.R
1962e7dfb90310e0458e460159e381c2 *tests/testthat/test-sim_unlinked_explicit.R
4e8678f725f5295e568b6dc5e4abbd55 *tests/testthat/test-substitution.R
0ab198e7b88cd41bbf78470fc81c3aef *tests/testthat/test-sum-stats.R
297d8ae17b2504dac906f34bc4179d7b *vignettes/substitution_models.Rmd
