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modEvA v1.3.2 (committed 2016-07-12)
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## Modified functions:

* getBins (affecting HLfit):
- bug fixed in "bin.method = size.bins", which was giving two different messages regarding ignored arguments

* HLfit:
- help file slightly clarified


==========================================
modEvA v1.3.1 (committed 2016-06-27)
==========================================

## Modified functions:

* getBins (affecting HLfit):
- bug fixed in "bin.method = quantiles", now providing even-sized bins (=SPSS)
- added argument 'quantile.type', to pass to 'quantile' function

* HLfit:
- added argument 'quantile.type', to pass to 'quantile' function
- added argument 'verbosity'

* multModEv:
- removed default 'thresh' (must be user-specified)
- replaced argument 'quiet' with 'verbosity' for coherence with other functions

* threshMeasures:
- removed default 'thresh' (must be user-specified)
- replaced argument 'messages' with 'verbosity' for coherence with other functions


==========================================
modEvA v1.3 (committed 2016-06-16)
==========================================

## Modified functions:

* getBins (affecting HLfit):
- bug fixed in "bin.method = quantiles", removing last additional bin of size 1
- help file improved to better explain what each bin.method does and what arguments it ignores
- added argument 'verbosity'

* HLfit:
- added examples to help file to illustrate differences in bin.methods


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modEvA v1.2.9 (committed 2016-06-06)
==========================================

## Modified functions:

* getBins (affecting HLfit):
- bug fixed in "bin.method = n.bins, fixed.bin.size = TRUE"
- help file updated to explain what each bin.method does
- removed default bin.method (must be specified by user)

* multModEv:
- included '...' for additional arguments to pass to HLfit
- removed default bin.method (must be specified if HL in measures)

* modEvAmethods:
- excluded "Miller.p" (previously eliminated from MillerCalib)


==========================================
modEvA v1.2.8 (committed 2016-04-18)
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## Modified functions:

* varPart:
- 'plot.unexpl' now also rounded to 'plot.digits'
- 'model.type' deprecated (message emitted)
- AB or ABC now also mandatory, and unexplained var 0, for GLMs
- help file updated

* plotGLM:
- warning on preds outside [0,1] now only emitted when appropriate

* AUC, getBins, HLfit, MillerCalib, multModEv, optiPair, optiThresh, plotGLM, threshMeasures:
- error when model(s) provided but not binomial logit glm


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modEvA v1.2.7 (committed 2016-04-15)
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## Modified functions:

* varPart:
- added argument 'plot.unexpl = TRUE'
- explicit error message for 3-factor LM with no ABC
- help file now with both LM and GLM examples
- help file now notes that wrong input = wrong result


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modEvA v1.2.6 (committed 2016-04-13)
==========================================

## Modified functions:

* AUC:
- error replaced with warning when pred values outside the [0,1] interval
- added argument plot.digits = 3 (for plot.values)

* varPart:
- added arguments 'main' and 'cex.main'
- slightly increased default cex values
- updated help file to make GLM use a bit clearer

* plotGLM:
- error replaced with warning when pred values outside the [0,1] interval
- added pseudo-R-squared measures to plot.values
- changed plot.values default to TRUE
- added argument plot.digits = 3 (for plot.values)


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modEvA v1.2.5 (committed 2016-03-30)
==========================================

## Modified functions:

* getBins:
- eliminated error when pred values outside the [0,1] interval

* HLfit:
- error replaced with warning on pred values outside the [0,1] interval
- plot now stretches if pred values exceed [0,1] interval

* MillerCalib:
- error replaced with warning on pred values outside the [0,1] interval
- default digits (for plot.values) lowered to 2
- slope p-value removed (values looked wrong)
- NaNs avoided by converting 0 and 1 in 'pred' to (1 -) 2e-16
- increased plot ymax by 0.2
- changed plot text location to bottom right


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modEvA v1.2.4 (committed 2016-03-22)
==========================================

## Modified functions:

* multModEv:
- warning now emitted, and help file updated, about calibration measures being valid only for probability (when input is obs.data + pred.data)


==========================================
modEvA v1.2.3 (committed 2015-12-10)
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## Modified functions:

* prevalence:
- 'na.rm = TRUE' added


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modEvA v1.2.2 (committed 2015-11-27)
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## Modified functions:

* Dsquared, RsqGLM, plotGLM:
- NaN-caused errors avoided by converting 0 and 1 in 'pred' to (1 -) 2e-16


==========================================
modEvA v1.2.1 (committed 2015-11-26)
==========================================

## Modified functions:

* Dsquared, RsqGLM:
- NaN-caused errors avoided by converting 0 in 'pred' to smallest computable positive number


==========================================
modEvA v1.2
==========================================

## Modified functions:

* AUC, Dsquared, RsqGLM, threshMeasures, optiPair, HLfit & MillerCalib now omit NAs

* Dsquared based on obs&pred now available also for Poisson GLMs
