ba35c69c8d78727dd68d88de3c9e3a98 *ChangeLog
4ee434ce0b756a55ae04b36536179611 *DESCRIPTION
67c2a220108f769ddee26754742517cd *NAMESPACE
c28217a05515649b1915f9906c056930 *R/EQQ.R
3ed1a91b97c85682a2c982401685a415 *R/dirichlet_functions.R
707e8d2fed869b332f4b3df2109325db *R/fromKrisz.R
46e3169d5c938f5f265c7c897f0962d1 *R/getSeqKernel.r
49cba9e5208abbcdf477c5f7f7d1f300 *R/krm.most.R
138f4b6e32c8d064319449684bd42685 *R/krm.score.test.R
6bca58a4b761e36f6cacf978f17fc484 *R/misc.R
008930cd6661f5328e4df5e1d8318d55 *R/profile_HMM.R
1fc36f2bcc5166cb1a1e90494ed9eb69 *R/seq_alignment.R
9393964c40695f069a7a23789debc84c *R/seq_read_write.R
cd3634111f10c084d5e1c2ce03c96c58 *R/sim.liu.R
b7f3194cd28723886a28c3cb0698a960 *R/youtilcopy.R
4738f7e7ed1b18118e95731494a28577 *data/aa.prop.list.rda
5cd0cf7f75915f51b15c5ed18d49f6fe *data/cloud9.rda
2fe627465ecefb86f566c590b946f9af *inst/misc/SETpfamseed_aligned_for_testing.fasta
61429f072ba7f319d3906a2852753fbc *inst/misc/sim1.fasta
8ccd0fab988819eabce174ca5af1bbd9 *inst/misc/y1.txt
a616e808bd826e929f56223020649675 *inst/unitTests/Makefile
f5603c25cdff9c9cbc647efee4f2b2fd *inst/unitTests/report.txt
515b18df7e17596dc38b9dbea407b26f *inst/unitTests/runRUnitTests.R
b941c222676b4b6b032febc9500e5862 *inst/unitTests/runit.getSeqKernel.R
fef83dcafcf771b8671bfe49cd475207 *inst/unitTests/runit.krm.most.R
237b4009c74e9666e35897744e548231 *inst/unitTests/runit.krm.score.test.R
cd44d05946a35795593e0921c2712c42 *man/aa.prop.list.Rd
fccaa08ec07e2deb260ed3e10d3c1eab *man/chi.norm.Rd
945d9e8827d7884211c7347ef8032321 *man/cloud9.Rd
75fd0ac8139bda858ab59b84075ebe14 *man/dirichlet_functions.Rd
fa1b7dae2a82f4fc49e127e9c6e276d0 *man/getSeqKernel.Rd
e0aa7a0226752da8bb6fb903544da391 *man/krm.Rd
d505636f881a3d9fb8a5361fc3e719f8 *man/krm.most.Rd
e4650367b25bd2f233b2261f37bfde7b *man/krm.score.test.Rd
2f0b1380158ef5d6824d0bb2824bc461 *man/profile_HMM.Rd
da12db8bcc82d7985a646210e6c66d72 *man/seq_alignment.Rd
26eea14c34116f2a4570747b60cc9552 *man/seq_read_write.Rd
5d16f04970a9eef96ef68c62c1e38323 *man/sim.liu.Rd
574a2a5f63e9d92b7dbbfe4955b69e80 *src/DirichletRV.cpp
afff9ce1d6a8cd88c2d0c25f3f75c55c *src/DirichletRV.h
0e29839e89c5832cd5f9c23942c201b8 *src/MI_kernel.cpp
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars.win
c4ebaa048a7db0eb7f629804743171dc *src/MathPlus.h
5de86dd659ae4391abaed9f1272e0009 *src/MixtureDirichletRV.cpp
3674bb362d4ff5ad8addd54170756c54 *src/MixtureDirichletRV.h
5edc42b03c83006ffbc9ff18983ed928 *src/Observable.h
bc1ad67ed5238b389bb32415c2d073e4 *src/ProteinSequence.cpp
27aa7a8d91a0a28e1be026236f45a4da *src/ProteinSequence.h
20e5297440d1ddd180b2da05eb278252 *src/RandomPlus.h
74d9be058c2864ff19f1e337e029b399 *src/StatPlus.h
0000555fc681f7bc2902df7b95328353 *src/U.h
b581b6030e7b32fd01ef15426c831aac *src/fromKrisz.c
9597814309f5c4b104f7d4bb6320a8ea *src/rvgs.cpp
e9dedb79359c1d90e4d05b7df5372c9a *src/rvgs.h
2ef917d27c7b5618611c4b378c8ee49e *src/score_var.cpp
42cf0e9ed4208d5894286a5737791fe8 *src/var_Q.cpp
e221855f7cfe6f37f265f6e1966c8f6f *tests/doRUnit.R
