ae0e741cf81f24f22a23c20382d234eb *DESCRIPTION
5d82e9946ace180a66d2fe6db26780f1 *LICENSE
a30b84939042241b2773f15e0052e8f5 *NAMESPACE
d315bd0478e85c16cd0f3b1dc6b9aa57 *R/RcppExports.R
fbcfdc8c66f538cfb932f46335e867c3 *R/calculate.gene.rank.R
fde9c71a5934ff237a4dd19269046786 *R/crossweight.R
c6d322165785a8fa5b40ffa0f41b6806 *R/data.R
f80bb002fce1e112814b67e8fb58712a *R/import.R
3c123d90a667dbf89091dade63e0fe11 *R/inferCSN-package.R
71a760e4abed3739f10cac5399ec0fae *R/inferCSN.R
0fab54600db880b5ed2c673b5065e21f *R/network.visualization.R
333af8560030e7ac76b52d933baf2a58 *R/performance.calculate.R
64d7d2369e200e78ddc8e9560d96c581 *R/sparse.regression.R
40cfcd354a0f236e6b8a861628fd1b76 *R/utils.R
dc8c6f04293b2d139fe73825c21f1889 *R/weight_filter.R
d26a2baf46f6db9a64ca52fcd6a9f158 *README.md
c865cc831c3370c46b93efe15036051c *data/example_ground_truth.rda
7876ce105fe62fea51999bf207905aab *data/example_matrix.rda
e14e9b714f5e7617ed2c4b727cc48e34 *data/example_meta_data.rda
dd78aa884be2a0c6db2c7cc77bee9013 *man/acc.calculate.Rd
b9f10b9ee2ce79f06fdb78d1dcf49cc9 *man/auc.calculate.Rd
9184d10b757ee131fcb88f6faa2fbc12 *man/calculate.gene.rank.Rd
2ec53a0f4a4b6070a92e031b5076fa5e *man/check.parameters.Rd
852b7ad289881bacb30cf00b6d636f62 *man/coef.SRM_fit.Rd
ae3dae8d622c792f1406a75153bc25a0 *man/contrast.networks.Rd
e0bb70d025402de9fbae2b572baca605 *man/crossweight.Rd
2900172baad4f9cd85e05e53393bb3a2 *man/crossweight_params.Rd
fd98c1624d8e41509f9209d60fae8e52 *man/dynamic.networks.Rd
bea92ebfc3cc63a4375cd260d58a1e42 *man/example_ground_truth.Rd
369f179d33e62b3546d42b46591e907d *man/example_matrix.Rd
4395d138df2bb37a4603150b74963ca3 *man/example_meta_data.Rd
4cde6e83b2d3b96a27c12cd1ba8e0091 *man/figures/inferCSN.svg
13d14f85d5b3651b4f96e5fc502a59ad *man/figures/logo.svg
3a55f6a30549f83fba29e223c4e327d6 *man/filter_sort_matrix.Rd
660b9f63753b32fb314e0b0426641a72 *man/inferCSN-package.Rd
694d0f11897c332cd4c85a362d99449e *man/inferCSN.Rd
2bc5da6085decce830a9ae5a868eefc9 *man/model.fit.Rd
26ea05c707c1cdc7d9f4d33a358c3541 *man/net.format.Rd
8e02b2ecf27186fc54941eb3cca15160 *man/network.heatmap.Rd
b9ce4fb9d00a5b82f22de24f477aab76 *man/normalization.Rd
22eb496af3e810feecd27c03bb334610 *man/predict.SRM_fit.Rd
323bf94a8a8c9b21ca80695bc7a3b7c5 *man/prepare.performance.data.Rd
97db8cfd5710b3f88301b3228c1c8ab7 *man/print.SRM_fit.Rd
4be9183d647ff5c6a3498e17d2e35f9e *man/single.network.Rd
1abad38810d25683403a8ea9a5909e7b *man/sparse.regression.Rd
28ae3951d7e466b631e4384096cccecf *man/table.to.matrix.Rd
46dbe5afd90222f603d4875c5baf5a80 *man/weight_filter.Rd
0347ffda63bae663f9354d1e0b948d57 *src/BetaVector.cpp
dadb1987bfb2f80d199a2e25b02a051d *src/CDL012LogisticSwaps.cpp
64737baec03e2641f58d5681381874d6 *src/CDL012SquaredHingeSwaps.cpp
6a4f677eff1881a88c670cf19c77773c *src/CDL012Swaps.cpp
d4f2e65104193ad8b04b23281a39cd8c *src/Grid.cpp
2ebc2a8b814581ce38dd0a53cf275ce5 *src/Grid1D.cpp
8748c274ffef69c8dc7f2c0f88228b22 *src/Grid2D.cpp
de248aacefd130f4c49b6e581d056686 *src/Interface.cpp
c2fbbe606dbc01e99513a08efa77bb27 *src/Makevars
c2fbbe606dbc01e99513a08efa77bb27 *src/Makevars.win
41bc93afdbfbce896558b943b882d7e7 *src/Normalize.cpp
fb4ab9386a76250a1012fc799738465f *src/README.cpp
5b2f7edf897fc18eea5f604275d365ef *src/RcppExports.cpp
b8da420687f2f9943625f9c8cddda799 *src/Test_Interface.cpp
e447698f0493b967abd0e0aaf2eca2c2 *src/include/BetaVector.h
e9aab72b23846ad7db4b0fa1e2597d09 *src/include/CD.h
3006562807501591e7979d1b5af7c039 *src/include/CDL0.h
c9262d8cc37f5ad121511ab15f1ef234 *src/include/CDL012.h
da6865571ac3a696ef96d8d10c8b7c9a *src/include/CDL012Logistic.h
c36020aa6b5463f99a6265a18d745473 *src/include/CDL012LogisticSwaps.h
75978be275c2af4e57318dda1d2ee505 *src/include/CDL012SquaredHinge.h
6acf66ba1b050b4869097aa56ed7cb10 *src/include/CDL012SquaredHingeSwaps.h
8d625ee2d1001e5fbd827359787faa78 *src/include/CDL012Swaps.h
3c65caa73f70506f9914640898d13c6a *src/include/CDSwaps.h
3e191a22fe2bee08cfd53dd8cd32f8a1 *src/include/FitResult.h
fa0e95061a24b8e548c611d4304664d0 *src/include/Grid.h
1e34795fcfd7f91aa821223794050e00 *src/include/Grid1D.h
5155c4b89da70421f47b4e82a0111866 *src/include/Grid2D.h
5f89a8eaba4ab540eb63046a1e83dbe6 *src/include/GridParams.h
0dc02d87935e4bf4860d17b010a91bd8 *src/include/Interface.h
68b70f6c4a8c08a8d7f6bb97746d3d49 *src/include/MakeCD.h
aea94cb863ab3243b5c681f9d905c175 *src/include/Model.h
8650499eeb16d4bf88397c8ed3c29c92 *src/include/Normalize.h
cdde68a3cfff76e8a18c34209800bea5 *src/include/Params.h
0816e979947d47e1e91c6327a62d641c *src/include/Test_Interface.h
f3a3cce4a45a5306180127b28e5aa66c *src/include/utils.h
624b128f72d3cfac81caf726f91d01dd *src/table_to_matrix.cpp
82ebc8c76e0a000e5bf6e391edd49ff3 *src/utils.cpp
