5628de10756ec70292ec9d3b8f14cb86 *DESCRIPTION
42194390e0a0a8ed3f44129d0036b3aa *NAMESPACE
c695f45e3a9f118fe499ea555bfe868f *R/add_clone_count.R
e3d7548e1ef340ad2e50a82eb560c1f4 *R/calc_vdj_occ.R
f581b16975251996725a247ceab20fec *R/codon_replacement.R
51fced099dfa519a6ce59aaf947742ef *R/codon_replacement_reconstruction.R
8c21683a89c40db9bdc34758942f8c5b *R/combine_into_paired.R
91da18ef40dcc061180f96eb41576c06 *R/data.R
6b3c4b0a863048884ecc1e68c61cc9d6 *R/dropout_VDJ.R
563c9c57d4bfd8a9a1007161c87f1c4a *R/get_AA_freq_distribution.R
f28f56c34c23ecef66e8b3039748041c *R/hub_seqs_exclusion.R
a42bd87226e88e03ff618b6f2fb6307a *R/immuneSIM.R
d952a264ea0c5de0d197a3a8d8eb54c8 *R/immuneSim_random.R
fc4453e661a932e4ebdc1dce42fac851 *R/immuneSim_standard.R
75349de180b0092a8ac9a52896b19ef5 *R/kmer_occurrence_opt_k_m_gen.R
e94082427003c7783ddf0b27548d695e *R/load_insdel_data.R
ae811c714d652dfefbec45c6621a85a1 *R/make_kmer_dictionary.R
7be5fcd6d158af12bd335eed6203e35a *R/motif_implantation.R
bf88db3ee393721cf70c5509d064740d *R/new_insertion_deletion_df.R
7c8edabe310b59bb81f975cffb8626bc *R/noiseify_VDJ_freqs.R
528ca483ed8ef2ef9ede92dea80d97af *R/plot_repertoire_A_vs_B.R
43f9781871ee98422cd72595e0cc1037 *R/plot_report_repertoire.R
d3ebb13f91bcda96da9344c86a9e1180 *R/plot_report_repertoire_AA_freq.R
c01e9de495a0def171157dd70301e7f5 *R/plot_report_repertoire_AA_freq_comparative.R
e45e53134d256536c28de7e0b2ba5906 *R/plot_vdj_occ.R
796820ff45f67df73e081c22553d9db0 *R/record_shm_events.R
ecce3f5319d72b0ecbb55c02e6bcb947 *R/shm_event_reconstruction.R
dd1369af88ce29d220f2e1e73712947e *R/somatic_hypermutation_sim.R
bb7f792b807c67c6931c11a4964b9dde *R/sysdata.rda
e79bb3b9b81410fa022f259282810cc0 *R/theme_akbar.R
31202f5b18d2fede299285f6dab68f58 *R/update_vdj_freqs.R
b1ee0a3f4ab176a1da5e7486e98b0f32 *man/codon_replacement.Rd
bfed13403b1725ec605cd400c4efe860 *man/codon_replacement_reconstruction.Rd
4546315e58deb1e5dd08df54bc5d4664 *man/combine_into_paired.Rd
0bcc04e76d4e61e0c1c1397a3b316ce4 *man/gen_code.Rd
f7d9ecd427f12eb8eca6b6f4ed7f27e5 *man/hotspot_df.Rd
862fbbec26140c011a1db53a2c16a482 *man/hub_seqs_exclusion.Rd
525f02b109b19f41943ca740525bc2a1 *man/immuneSIM.Rd
673c0d90422cd6221dbd644219849f6d *man/insertions_and_deletion_lengths_df.Rd
b2d62aa7fc10e7f792210e01adb43bbe *man/length_dist_simulation.Rd
48c0e83f9c6a28bbd97d892396304a8e *man/list_example_repertoires.Rd
4713779bfd3329f3b7d2d055e60df85d *man/list_germline_genes_allele_01.Rd
a5deeb01de06a464c0b01c7da435692f *man/load_insdel_data.Rd
fc79fb5b1548362b69bc43023d11bfdd *man/motif_implantation.Rd
8046c3acefe60cb3566d70a9eddd7245 *man/one_spot_df.Rd
c41086845021c79a615182440f37edbf *man/plot_repertoire_A_vs_B.Rd
dcf3d39fd5bf43e3f7a9e733d87c5b42 *man/plot_report_repertoire.Rd
ca9d82ebd269cb80267315d3246da012 *man/shm_event_reconstruction.Rd
