3b7c49c054fd53a3f806ca8702c37210 *DESCRIPTION
31bbf5b0873f4af9dc1eccfee9e967dd *NAMESPACE
53b790933353389ca08097e759f791fc *R/deisotoper.R
0705ac78c1ff40160415363c07fda193 *R/onAttach.R
fa8424676cc1054dc73353200be088b3 *R/onLoad.R
e4f70754a00dcd15c815e5bff48686a1 *README.md
59462a0d89254a196304444fa8a0500d *build/vignette.rds
5a4c7e6ca90185050031af21fe533dd1 *inst/doc/deisotoper.R
e5827e48c31daf63513dd9042e4e25e3 *inst/doc/deisotoper.Rnw
e840fadf5d2911f9dec750557c51e5bb *inst/doc/deisotoper.pdf
b1e01b26bacfc2232046c90a330332b3 *inst/java/LICENSE-AL.txt
1cfd54eaf35531cd95ba056ddbc536ea *inst/java/LICENSE-EPL.txt
e7ee7901838fed86cdcd56a84eb2df07 *inst/java/LICENSE-LGPL.txt
d612f2ef67e71699ee83a28f69c19e2b *inst/java/LICENSE-README.txt
e109d4904b5ef324a82267116c27d012 *inst/java/deisotoper-1.0-SNAPSHOT.jar
e15075deb1b60f5951d017ee85456356 *inst/java/jgrapht-core-1.0.1.jar
e813329c3214d41c35e86a98bf75a41a *java/Makefile
74340914b3a0b2a30cfc3a1b210c5fbc *java/deisotoper/deisotoper.iml
beec6fbfc3da0cf87c054d4b15eb4772 *java/deisotoper/pom.xml
72401d56bfe4aaf4ea2c305eb3085a44 *java/deisotoper/src/main/java/ch/fgcz/proteomics/Version.java
979d2deb948981bb0f6f7d7c1a815602 *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasure.java
ceb80063baaa87a8ecdbf777f4ad4cda *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasureSerializer.java
f0e65d0eada3124e529a3892da966589 *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasureSummary.java
e5123b4a7aad4f940f69a0a3349eed1b *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpectrum.java
823492de22f5245054a3508dffbabf5a *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpectrumMetaInformation.java
258767d1e99318f35aa4eec62bb02da5 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Configuration.java
cbea156816d444f47a61cdda9d89d981 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Connection.java
28ecf47cd24c01a767b09be293faa9d5 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Deisotoper.java
1f8a1c915ef2d18a8923e3bf406dee4d *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/DeisotoperMassSpectrumAdapter.java
e3fdf96353992b762bdad5c1d9d678e2 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicCluster.java
34e4878bc4555b496a953bf50de7e42d *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicSet.java
b6d861a9df33028d2f9b0909e8ed6851 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicSetGraph.java
57a92b1cb413dfe9545eeaa89013e1a0 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicSetGraphToDotGraph.java
ebc8a852c26814080b781b66d394167a *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Peak.java
5d8b24efc112c04f576356c31a3f3f3e *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/PeakList.java
f8e87c202a8e02112c8fa65cd4779bfb *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Score.java
09761b3bd46739fde7c08ca682670c15 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/ScoreFive.java
c4bd394f4df216d41d909225167c6a8a *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/ScoringConfiguration.java
8d4d0992e21530235055819187320ad9 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/ReadMGF.java
6fa93438e296a018b63f059dfd692c35 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/ReadStdIn.java
bf189ef0974bbb6f7a0a69277bebf6f3 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/WriteMGF.java
32cd933b4b49581b1030a85ba31bdf23 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/WriteStdOut.java
54be5d37d5197da7004dc52cde7b001d *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Convert.java
35d4120ae780db10bbf5d401532e03db *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Deisotoper.java
8fa1d533afd1de829c7897a09531ed47 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Mspy.java
a6d96833d3765767002e14a298a21d47 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Peak.java
81f658806fc97acd727925aae9907a45 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Peaklist.java
986a86c939f53e090bc8f1652ff921dc *java/deisotoper/src/main/java/ch/fgcz/proteomics/r/FeaturesBasedDeisotoping.java
1f592b267e2665880bf84a0eb733f639 *java/deisotoper/src/main/java/ch/fgcz/proteomics/r/Utilities.java
8106452b3c8d74cf6e4e08f47454ba4f *java/deisotoper/src/main/java/ch/fgcz/proteomics/utilities/FindNearestNeighbor.java
0476d3dce5e2f03bcac84ee2ffe38dce *java/deisotoper/src/main/java/ch/fgcz/proteomics/utilities/MathUtils.java
a4d33b6c0ca5e899c461ccef1e5c2208 *java/deisotoper/src/test/java/ch/fgcz/proteomics/dto/MassSpecMeasureTest.java
43a6b554ae1ff825a0b7053a1a604017 *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/ConfigurationTest.java
48057f97b75af575739dc03e71491a1e *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/DeisotoperTest.java
0e9c093ca8ad8951bc0ee34aa8ea0003 *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/IsotopicClusterTest.java
931345baa2040432f20ae5a313d7c1fe *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/IsotopicSetGraphTest.java
38d34c16be0eb4cafefd5b649831e8cb *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/IsotopicSetTest.java
281c01e3bbbbab553408a2dff39d2274 *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/ScoreTest.java
cda5f9a49d39d18037274de4ebe98ffa *java/deisotoper/src/test/java/ch/fgcz/proteomics/r/FeaturesBasedDeisotopingTest.java
b1d48378c893a68701620ffe62c041e4 *java/deisotoper/src/test/java/ch/fgcz/proteomics/r/UtilitiesTest.java
40e79d19b331faaaa5b86d720d138bd4 *java/runSonarcube.cmd
0bef7cf298df4e8caf65edbbc7883209 *man/deisotope.Rd
0dfc36fc36d0e7b6ef35eee8ee9379f3 *man/deisotoper.Rd
1488efbc9ae94d4e98d5092bd7eccc4a *man/findNN.Rd
ddee421c28c824590a41eca79a4e2b8c *tests/testthat.R
7c2b4c9b67e21ab03dc92a3be571f84b *tests/testthat/test-deisotoper.R
31381633fe3e6aab3b5f84cdaec1553b *tests/testthat/test-findNN.R
e5827e48c31daf63513dd9042e4e25e3 *vignettes/deisotoper.Rnw
4d042191dea1ae6d1b55c615fc51843f *vignettes/deisotoper.bib
