ca036a45a30c62ca39ad8b6c79e1c2f5 *DESCRIPTION
2d073946327993e0646686914a6dd278 *LICENSE
c09b7ce836a5b12239c581bc9dfbdc3b *NAMESPACE
dbbe4562e7a5e1dc4a142ecfed83001e *NEWS.md
f3bec6f6316496613937a20b72085dfa *R/Dropout_correction.R
a8dedbc6d860206e2c0b2f888ca9aebb *R/Fast_analysis.R
d1bb81d2158baf43b27a858118b96b55 *R/Fitting_Models.R
603212c076d750521f2d3ecc1969552c *R/GS_table_data.R
1e002744cecd27c3eeed35d2b1ab3500 *R/GSprocessing.R
4af6c468226f919c53468f0e06366ad4 *R/NSSHeat.R
3b2744ab4bd87b1b5f279ec150a8cff1 *R/QC.R
3438e4d90a406d9e20f497d12e9cd10b *R/Simulations.R
ad637f4a16c1c3ebbbda7c84fe98327e *R/TL_stan.R
e2fc1f9fc27c8559a33634e1b03ea809 *R/Visualizations.R
61f2269ee3a222e86200b82539c485d9 *R/bakR-package.R
07864a977682dda19e2e73bbab163be7 *R/bakRData.R
ee0bf111ec1e39669bb6906eac6c7e09 *R/cB_small_data.R
9c4860b0cbcf9b98e777ddbab525a47a *R/cBprocessing.R
a9c3c2825dc946e526f416d633014d86 *R/fns_data.R
032abadab9a3c3cd8b014ecd61ec4993 *R/metadf_data.R
677c8257424f794e64fe9f534d7e03b6 *R/stanmodels.R
c12f7048cc70f7f3ba87ae770997599b *README.md
01c683f70a7316f77ba97b0105bd7fbc *build/vignette.rds
7e297a31e37e77c201a2bacff2f979eb *configure
845efca43973cdde1a6174faf1d88e99 *configure.win
39521c06f559a081bb9ac798db18be9b *data/GS_table.rda
7969fe5784078463b7357177ca30675e *data/cB_small.rda
509a787cd50433a45f3f177cc91073f0 *data/fns.rda
6e566aea8afbde0670acbb346685d1f7 *data/metadf.rda
fa03b7aab9b8d3be848afb9d30f7af75 *inst/doc/Differential-Synth.R
605a6f4cb6fc8511c8287fb12adb50e2 *inst/doc/Differential-Synth.Rmd
10df0e2a0a26737b3c908a0306d4e4b1 *inst/doc/Differential-Synth.html
3cea5259092813e8e3dc4b26af5e446b *inst/doc/Dropout.R
73adb0690554510b8d00130b26975843 *inst/doc/Dropout.Rmd
90a74c1479f0139a15cefa32d9eb414f *inst/doc/Dropout.html
c94b5b71196f8a1666707004490c2fc5 *inst/doc/Getting-Started.R
512aa13943b81dc96aa1c6374fe057c9 *inst/doc/Getting-Started.Rmd
c0502293c2b1c1630125a864d11cf6bd *inst/doc/Getting-Started.html
617349804eaaf27929a9b728e2804d92 *inst/doc/NSS.R
c43051babad4b98d46afce8bbaec195f *inst/doc/NSS.Rmd
69febe42cc5ff5b0a9325cc529bfddba *inst/doc/NSS.html
9dcbdb072d6e4535df04cd85a4d1513f *inst/doc/Troubleshooting.R
f8999185fd2d2f6ab9d433dd5d4c480b *inst/doc/Troubleshooting.Rmd
728c2f3f1e3edbba21aa75c5e7645aae *inst/doc/Troubleshooting.html
dbd8565daf3e7d0e28e77bf288a8ed69 *inst/doc/bakR-Fn.R
0715ce425e419be18ccbe0cf15a9ec29 *inst/doc/bakR-Fn.Rmd
bb5be52df8fc7f259f379408c93b7b6c *inst/doc/bakR-Fn.html
e8c5e7d663c1a0b3ca1dc8b8e2ad8873 *inst/doc/bakR-Quickstart.R
5a93bc7ce7cc16b3d5380e1c0a82a6ac *inst/doc/bakR-Quickstart.Rmd
afa1ba35037a121b63ef3a764dc1a335 *inst/doc/bakR-Quickstart.html
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
d346a433d7c7115d70ebda8ec573afc1 *inst/stan/Hybrid.stan
93c83fe0b3464af6681541be1daee3e3 *inst/stan/Hybrid_NSS.stan
c87c5bdc2d8eea1493feebca00d6599e *inst/stan/MCMC2.stan
3a45bea6eaa44213603cce58d8639d61 *inst/stan/MCMC_NSS.stan
5603c2dad33f52c8b8295f92e7cc9e52 *inst/stan/Mutrate_est.stan
d3934e0654efe6862f30330cc971e2f1 *inst/stan/include/license.stan
bb5f997eaeef5d9b85296dca05c7fd68 *man/CorrectDropout.Rd
18cb8b1edb84a0e575c9fe7d14ca7879 *man/DissectMechanism.Rd
670ea66b788d2dc75841a5dece90df2d *man/FnPCA.Rd
666ee90abc85f2cf5ca7e320d983060d *man/FnPCA2.Rd
9a0017b1895e3239391edeaba6280af5 *man/GS_table.Rd
7f34264ee4a67a68a274f30b82c54f6f *man/GSprocessing.Rd
a4d41acc3f51f0148d79849947239cae *man/Heatmap_kdeg.Rd
d33fe0572318cb570c591eb11565de85 *man/NSSHeat.Rd
95345ec51fdbf3f26d5d0efc3e38c957 *man/QC_checks.Rd
fb6bf9b8600afc3cfdc180220f1d20c4 *man/QuantifyDropout.Rd
aff18f220e82dbaae9ad0499208b9233 *man/Simulate_bakRData.Rd
a405aaa51f5d81f0fd02d42537c6c997 *man/Simulate_relative_bakRData.Rd
f676ce40a740e275362657d117565977 *man/TL_stan.Rd
ca96c8a5b84e7d7156793ffc9b410fa6 *man/VisualizeDropout.Rd
966e1ff9f5ae2be1d40572814bd3d5e4 *man/avg_and_regularize.Rd
f7e46ee26c2375450d155996dcea2425 *man/bakR-package.Rd
303273e28e55690cdf6ed799d8f2be8a *man/bakRData.Rd
c7f2970fb2d3a0fff5ef98e433e81a40 *man/bakRFit.Rd
23172d1d3e95d6d33e55af0398c5b52e *man/bakRFnData.Rd
fe08661ef14df0a838f50c689dbc13a2 *man/cB_small.Rd
2717017494e6a2be0d03ad58b874d2eb *man/cBprocess.Rd
36fe97e8e07b2f232897bbb18e8e33cc *man/fast_analysis.Rd
f70b39ccf4378108e4e238ce8c476ec8 *man/figures/NSS_Analysis.png
6e8b94dd774e410c551a04126208f2c7 *man/figures/logo.png
052208a266a499bb4e831e5c981c134d *man/fn_process.Rd
a92f6dd9b19c70cbfa11233e163625f0 *man/fns.Rd
c7949115fa74de2fc00263e6ef5586f2 *man/metadf.Rd
cc3e395bda6c119eda83005b10d46d28 *man/new_bakRData.Rd
407551764499f8bbda11226101cc0869 *man/new_bakRFnData.Rd
63b43e578618d3b8f3bf9ef089c795e5 *man/plotMA.Rd
21110f28d00636f37a5df5695e783298 *man/plotVolcano.Rd
38d224ced8bbea8ce6a1e1c5dfc3d4f7 *man/reliableFeatures.Rd
1baebf40e50c7131e7feffc3528ec7fa *man/validate_bakRData.Rd
9f0ede2b1a9b513f664085a726ca72a5 *man/validate_bakRFnData.Rd
457929755cc1db9abe969d16b0006005 *src/Makevars.win
90d982bb72bddd13231ff9b85694f2d7 *src/RcppExports.cpp
ca787811b5035872d0480afb1c0c967d *src/stanExports_Hybrid.cc
81c07ec8640d22d72417bcdc88c9fccd *src/stanExports_Hybrid.h
b11337cf0c9c067ee2ece48629271394 *src/stanExports_Hybrid_NSS.cc
b875174ef7ddd9dcc61fdffc4b5b9b2d *src/stanExports_Hybrid_NSS.h
5f5a517fe4c0a74bfae25718b22e79ab *src/stanExports_MCMC2.cc
ac3cbe10b75a03c04cb8011beb54bae2 *src/stanExports_MCMC2.h
9ed5656c812f78e03c50e636f0852a50 *src/stanExports_MCMC_NSS.cc
6c349e6846a5b82dcc8839513c386d87 *src/stanExports_MCMC_NSS.h
249317c908a1474ecfeea738ca94d419 *src/stanExports_Mutrate_est.cc
2d8dae5a0ae2c76df38ca9b394fb0402 *src/stanExports_Mutrate_est.h
605a6f4cb6fc8511c8287fb12adb50e2 *vignettes/Differential-Synth.Rmd
73adb0690554510b8d00130b26975843 *vignettes/Dropout.Rmd
512aa13943b81dc96aa1c6374fe057c9 *vignettes/Getting-Started.Rmd
c43051babad4b98d46afce8bbaec195f *vignettes/NSS.Rmd
f70b39ccf4378108e4e238ce8c476ec8 *vignettes/NSS_Analysis.png
f8999185fd2d2f6ab9d433dd5d4c480b *vignettes/Troubleshooting.Rmd
0715ce425e419be18ccbe0cf15a9ec29 *vignettes/bakR-Fn.Rmd
5a93bc7ce7cc16b3d5380e1c0a82a6ac *vignettes/bakR-Quickstart.Rmd
