03a47295e4a09883d5321008b7c9eaf3 *DESCRIPTION
ab9ac27c29b25b00b384a432ced00b37 *NAMESPACE
d0a396ca4ce987f1597404f0deb82a88 *R/Bonferroni.sig.R
64da403e5e1b0b15d9e35aad3b2f60f2 *R/GenomicControl.R
c5e9ca529b67a4e7a3d1fbfedc1dbb6e *R/GenotypeRate.R
786d12f12b1533af500aebe972a3f141 *R/LD.R
4f52c6c6bf0db36876ab7cb39662a6e7 *R/SNPHWE.R
927ffcbd7018d1aa31ac7379ddb7e17d *R/Table.N.Per.R
a0d129430f3649f45c99af99107bd5b8 *R/Table.mean.se.R
8b70771e3593daecbe937a6496af755f *R/WGassociation.R
ce27e682dc6c18aaec27f9b306b19c6b *R/WGstats.R
e165b3b2957493e9d227184890d967df *R/additive.R
36900b7804e079b4dd0d20cdaf1e9e47 *R/additive.WGassociation.R
119b885ac445abef8cf8f4002ea77025 *R/additive.default.R
6095dccbbde88cde83f793a84505d62e *R/additive.snp.R
e722942249b43178aca7be2ca3351df1 *R/as.snp.R
5ba63f48848319179ae1aa57ceb001a5 *R/assoc.R
3954d8d579f6eccda9d06aed87b9c151 *R/association.R
74fae63f6ff238d706a9569ab2093932 *R/association.fit.R
64d1f19a0b1e9744e16e72a57aa0daa6 *R/c.WGassociation.r
70bf3c2ce05f00d566e182205d1d7e7b *R/codominant.R
1a9e3982427ae10d8da7df7bec9ee460 *R/codominant.WGassociation.R
052e12b3be72d3fe4e739988c3dd5483 *R/codominant.default.R
e80b4d0b62fdd6a8e505d5e8eb43961f *R/codominant.snp.R
614a9df5b896767140bfe2643c791099 *R/crea.lab.R
89bf63f29b28192ce3fa977730e18e4f *R/dominant.R
be9ce2a099f0883791f4d79c2c1da991 *R/dominant.WGassociation.R
50bc3b3862e9d5fef0a7ac105e363427 *R/dominant.default.R
632ab799ca1a1fabcd1878dd3d142cce *R/dominant.snp.R
36e32ce9cabf28e59f51fc4cd35c4de0 *R/dscore.R
502e34800d72aaad235d7bce4b7ef302 *R/dscore.character.R
f203c95aa5adaff4fcb0f5d99b69717e *R/dscore.default.R
5064f4163171d11b238102466d3150bc *R/dscore.setupSNP.R
6feadabe06475a1f7a9fe927b94b45dd *R/expandsetupSNP.R
5c0f1ee0edf67248e10da5b47e52e9a0 *R/extractPval.R
d01b61c176611aba3ae7da559ce1595f *R/extractPval.i.R
9d543618994e694cebfb6aa5abae91cb *R/getGeneSymbol.R
f42d9682893d2442d0b5d6604c9d979d *R/getNiceTable.R
7e5e473d19e5066c37f2d01678af4819 *R/getSignificantSNPs.R
630be123992ba1cb167d7083f6da581a *R/haplo.inter.fit.R
66ad2ab6bbad0ef049b9ab33e9cee70d *R/haplo.interaction.R
af7f3b61cac7677b8aafd4b06b385630 *R/int.R
dbe0bc43100a146e1f2fa681bcf1a208 *R/interactionPval.R
429ae74570372eb1a225881f2cded405 *R/interleave.R
70d0e1c984f678111c300c49543b4edd *R/intervals.R
ac5aefee0a50de2de3ceb526ff5afc37 *R/intervals.dif.R
56be4ddeef7f86d873ace11a66b6edbe *R/intervals.haplo.glm.R
e2d800620ce82667709e2360f12524ba *R/intervals.or.R
9ce68d0baa565b07e006ff2ba14ad6e6 *R/is.Monomorphic.R
1c2d706d021f83fdde9c9a331bf66e71 *R/is.quantitative.R
0353459068b3f806f163d762a987feb2 *R/is.snp.R
4017921314bc22752ac809d76909ba6e *R/labels.WGassociation.R
b43f6f599ce5fe3f9bb64e8ea87a0228 *R/labels.setupSNP.R
3d5f0f93068f1f28bb0bd89b63c3dd94 *R/make.geno.R
d897a766c470ce46796e6995f2988e3e *R/maxstat.R
bcc6e4d2d3755d8aae43c54625d63553 *R/maxstat.default.R
5fd003fdc30fca5c0469c64ff9e72ca6 *R/maxstat.matrix.R
dbcc69f090f97427e667fa44c4c6a37d *R/maxstat.setupSNP.R
a131fceebb680f3bb8b2cd7ec0d5a75f *R/maxstat.table.R
b8210dedf19a1ce120aca26d20bb40bb *R/modelTest.R
f86f8fbb79309530fd9d89433bc82d94 *R/odds.r
d1f8da481659b4412151fdb9a38d5459 *R/orderChromosome.R
a9c0afe94aa3b3adcef2b2b612b51fef *R/overdominant.R
a29b408ca8b27aa1a02e9fe3f6494a68 *R/overdominant.WGassociation.R
ef40a0bd773405f037c1d680572a9b3e *R/overdominant.default.R
45f30d8b6d1d0c66d4c0bf39bb5d824f *R/overdominant.snp.R
8cba4c8c001b0d85b0342039267c90e7 *R/permTest.R
d3d443d1bf55b386e5c2fbd970be2221 *R/plot.SNPinteraction.R
0b20bee6d8b6f71a8d22dbaf4eb99550 *R/plot.permTest.R
eea7dd20e8ea77197528a7dfe36387a2 *R/plot.setupSNP.R
1370eb00322dce32090997c3e42a0bc0 *R/plot.snp.R
4395904626b34d44f09a537a780d78eb *R/plotMissing.R
644c089f43829d4c97940c2b970ac8da *R/plotWGassociation.R
2e455eae93e62c497d978cbb7bbad7de *R/print.LD.R
4bf9ebdb297aaf25dbdd0325a6ffccd1 *R/print.SNPinteraction.R
c11a06c391f0ae6493a26bfd9f62618d *R/print.WGassociation.R
186d719a7d4782082c83c93c2470dbd1 *R/print.haploOut.R
ac429ec0d222934829fa3d26cf1b6700 *R/print.intervals.R
49a523e88c5605183607e401d3aa9c68 *R/print.maxstat.R
2c23d8fe04470c190af840dea9105cc4 *R/print.permTest.R
c6cdfe2268dfcbae78cb9499cc82395f *R/print.snp.r
72488018b7f7da473a53bd54d14314ef *R/print.snpOut.R
f9d36376c5eef349fc472f20f5607d91 *R/print.summary.snp.R
f36bd072eee9657be6b961c45f760da1 *R/print.tableHWE.R
70d65ff14b1f6e76361aaf9286860be7 *R/pvalTest.R
e386ae65298a3f9358570247d661a697 *R/pvalues.R
8903280fe58e3cab14866d319cd5e2d8 *R/pvalues.WGassociation.R
a8d7bc6523e5f26229439ff9c20a636e *R/qqpval.r
ee0c3ca964f3dda6eaa51796af048c58 *R/recessive.R
5db65ac496678e33942f1024c5caa5c4 *R/recessive.WGassociation.R
29d5bd75f7fa08e5bcd71318bb8d091f *R/recessive.default.R
052b6d27c354724498d189a05089f935 *R/recessive.snp.R
c87fb5b73a4a5b23b297a1141583cef4 *R/related.R
c4ff98ffaaf9169c742333869166c48e *R/reorder.snp.R
950357104ddba3ed9a8acddffaf4b784 *R/scanWGassociation.R
8c3f9fcc868712a8c00d4bc8646d4ff9 *R/setupSNP.R
81bd7d0184f4de9dada49a6ef169b4a7 *R/snp.R
adb4d5da658b07a905fa62962bb71800 *R/sortSNPs.R
54306813b9033bd7aee35272576f1ec2 *R/summary.WGassociation.R
2835de83105bf3601d6ddc8c73fd9420 *R/summary.haplo.glm.R
e03a6c5a150aadcad4dd40cf3653b947 *R/summary.setupSNP.R
c824b107632cb255930e13f7c2312040 *R/summary.snp.R
73e82c61272523637ca0b1f117f8789c *R/table.corner.R
083441b75ac82c1b5f4784a0b5af6414 *R/table.interaction.R
4c5cc9d88e48c89d9c46c2be95f5857d *R/tableHWE.R
a77823953004e9f6461f470ca8661847 *R/togeno.R
62a57ebe979a255aa3cc353a09fc17a8 *R/trim.R
233ed01a8361f86577e201f5a22a0783 *R/z$.setupSNP.R
8dda166f13a4a9d5808ab155fa258223 *R/z[.WGassociation.R
41ee9ea93b070928983bb25129ef822d *R/z[.setupSNP.R
26df01f0f031dea632f2ced65dbafeca *R/z[.snp.r
68c4cb1297dd0a69e9130e642d1f30ca *R/z[[_-.setupSNP.R
6bd68bb31cc27d4446d077779c1538bc *R/z[_-.setupSNP.R
23b5928433178de4840e39c05a4cd6eb *README.md
40879a6751069904c19476d747672845 *build/vignette.rds
838eabf2dd763270a558c794e261aed7 *data/HapMap.SNPs.pos.rda
b54c146dd48f7c4948ce5b9f37b5981a *data/HapMap.rda
4439dd4a948af7154d8a3ff1ac404799 *data/SNPs.info.pos.rda
d40ae44ec9ebfd78a6b2536f69848768 *data/SNPs.rda
b3bcabf092d57adea302f19a5e300b0d *data/asthma.rda
2f0e826e5c9e7d2dda8fb8d3acc86e51 *data/resHapMap.rda
caa445f55a70a044977002109f677c39 *inst/doc/SNPassoc.R
4238d55e4353c9ae2ee35d7e78052906 *inst/doc/SNPassoc.Rmd
cc103972698c5fc3447c8627eb08e3ed *inst/doc/SNPassoc.html
f625e9acb7ebc321a58404ff3c22cbc4 *inst/docs/changelog.txt
720bf3a2d0e711f09fb8758f2437d5b4 *man/BonferroniSig.Rd
03ef2efcdf8bc89eae5f7e3448f78c83 *man/GenomicControl.Rd
c4ab72a4872ecc51b590ad1476e221a5 *man/HapMap.Rd
900a5672a3a3728e45bdd5478c3a1138 *man/HapMap.SNPs.pos.Rd
5b790dfe166c23559d64af69567c712e *man/LD.Rd
a449d5b8344329fb735f8ba490085705 *man/SNPassoc-internal.Rd
1b5db7ffcb59888723d3e446aff26e2e *man/SNPs.Rd
1f4016ad1b8033eca7f2e6d92fd6ec9f *man/SNPs.info.pos.Rd
35466e0e43254f091e64bfec81ad56cc *man/TableNPer.Rd
e4ebde5aeeded8aa70990e8046046d22 *man/Tablemeanse.Rd
01dc1a479bfd552603b8caba8a0f5bb5 *man/WGassociation.Rd
d45d2f9afe727ff31f94ec5e002cbf2f *man/association.Rd
2ddf65e40c959eededd12a4fa0a248b0 *man/asthma.Rd
f1a3520a01cc749457fa77746cee4a39 *man/dscore.Rd
1b24a9676146a2ae68e897b8013ad44a *man/getGeneSymbol.Rd
120c47527970370a32597196f2bf804b *man/getNiceTable.Rd
6eab0f29b5255084427e0db4ba49439a *man/getSignificantSNPs.Rd
06bad0992b4d7da439f69112e35d8c98 *man/haplointeraction.Rd
b720a161a5581c95ed271cb64946308c *man/inheritance.Rd
c4cafa8ad35a5e372c4841a49dc49573 *man/int.Rd
b859fe1fb9cf9dba7450e909690992df *man/interactionPval.Rd
e2bda800adf30c7da9fbadc2df290f00 *man/intervals.Rd
72fb8117808aef9c8f113975a7741869 *man/isMonomorphic.Rd
42e278d0f84478c7f22eae323f3a227c *man/makegeno.Rd
d340b7a3d68977ccc6ebf9004415b211 *man/maxstat.Rd
407ad259b9d99d76da66c2f0fb14dd8d *man/odds.Rd
78eeca864c243bc94afe92eb35b89c9a *man/permTest.Rd
109d65b58d05da2ce2437148c5631002 *man/plotMissing.Rd
6666f684fbb8a99a427bf8ef4e9a0757 *man/plotWGassociation.Rd
1470e78d19a93f09dbe7b832f6965903 *man/qqpval.Rd
2751a485e1cd096edfa03e3354908048 *man/related.Rd
8d0b3ccdce8ca2d6a46cc13b4dc55850 *man/resHapMap.Rd
2ebde15343b734f3a0ef521c214c32da *man/scanWGassociation.Rd
73bb8149ea0fbd85904aa00ea64412a0 *man/setupSNP.Rd
12a90442801cb33f61a1b7cd16476249 *man/snp.Rd
10c0e18d33f2d1583e26aaeed7cc4115 *man/sortSNPs.Rd
65b6fa0f4008f0cd254c86ad6c5923d2 *man/tableHWE.Rd
4238d55e4353c9ae2ee35d7e78052906 *vignettes/SNPassoc.Rmd
de00cbc519ff1040189962723ce1e508 *vignettes/multiomic.bib
