ead70eb7739080149a5b1e2397096a21 *DESCRIPTION
477246607f4a30548bdbb0cb8ec81b93 *NAMESPACE
dd8245382d7aa0781aafcb6d2c9f9e2d *NEWS.md
59032ee1280d547e6c398aae6c937577 *R/Dbf4myc.R
8603f043e659db51ca342fb20bbdf7c8 *R/MFAseq.R
9946800cd1660448a7ed502232749268 *R/TrepDF.R
13462bb7214f633c0a68ab827e1073d2 *R/W303.R
9ae30bf3ae7cc48843e48841f4f01104 *R/W303_G2.R
208b34d471a0605881990a7ddde6a5b0 *R/W303_S.R
04eaf387aaa492d8e55fd744e5729bf9 *R/W303norm.R
8bac328b45e8537f795a4c18a7aa9ed1 *R/calcTrep.R
a6eca81d072a479159296a41bfa892dc *R/compareRatios.R
7f58573d0aede55d4f01a74c361a12d8 *R/guide.R
336bdd9554351aba393cfb793b320853 *R/loadBed.R
7e3d7321cb8837843ca3f3160be43072 *R/makeGenome.R
0619cc28af4c8ebe0f1bd4e231109cd8 *R/makeLabels.R
aa02eb4000e311a68c05eacb64326aed *R/makeRatio.R
abe16511c5f44d3d20597a8bf7fba68e *R/normaliseRatio.R
8f6e136133df91341b6f82342dd7e901 *R/onAttach.R
c304a54e3eda0675ab05d57740c74eae *R/plotBed.R
4879a42b8f75addf3bd7295ca1fd4dff *R/plotCoverage.R
9068dd3ec2b80454ea15fab248410154 *R/plotGenome.R
63c57742554eecaa25391aaa3910fc6e *R/plotRatio.R
27d1226a24fdbe5d853c644ba4de9498 *R/plotTrep.R
d6fdf442339bc8e83db155bf74a95ee3 *R/rmChr.R
0136c57f4493a33e0e57da92570a026f *R/rmOutliers.R
017e183cbd589e3a2779988dd6c25e52 *R/runGUI.R
c6582e97c026de9e30f689b05c1902be *R/sacCer3.R
7be1e3bb4e017cbd33e1c0751d385fa3 *R/smoothRatio.R
ae377fcfaab0c60e6ed416546eaae195 *R/sortSeq.R
29f457d83b2e946509b30d398ffca818 *R/syncSeq.R
3d2aaec31bc1cb1eb1c42bebf7acbdb8 *R/trimRatio.R
af13d92db7b265b200123c4967bb4454 *README.md
ceb2ed319ba6eb11f7a292b5dfd16c0f *build/vignette.rds
63f3c3caf689cfe3e6f7aff25f93b214 *data/Dbf4myc.RData
4ef18b93957dd135343a7b062cb0e4bb *data/MFAseq.RData
1ed5d2c1f651dd319029115fc1fbd4f0 *data/TrepDF.RData
f20c2836a68030da7362799749cd4481 *data/W303.RData
d86158b02b078c3ec570c25acec0c716 *data/W303_G2.RData
6c014d2c63dd2e208790d94702f8e791 *data/W303_S.RData
a8efb6de7cb5d959e382bdc550a2a244 *data/W303norm.RData
4413d3c062f5f9ccbb96f441dc4fe035 *data/guide.RData
3cb6cea4489f3cc62f7796c9dfcc20cb *data/sacCer3.RData
434923ac24175ecf110d2aa9684741b4 *data/sortSeq.RData
8c01b9de9ed42a3ca5c083ba0f1c35f1 *data/syncSeq.RData
90c6253a7f79352e7743dfa71d8039a8 *inst/doc/Repliscope.R
9285a7368740e95a6d8c55cb3fc9633e *inst/doc/Repliscope.Rmd
1ba01393f11f9b286117eb5f012b4487 *inst/doc/Repliscope.html
779fd59778805d2d5bd1ec97c006bf94 *inst/extdata/W303_G2.bed
569a665f741d4747f808874125b8cf6b *inst/shinyApp/server.R
afaf3e77bd2feb411bd9f9035b443122 *inst/shinyApp/ui.R
47f311cb5b226f1dcdb8fe9683cbbb54 *inst/shinyApp/www/Repliscope.css
334a34fbe3d60cfeff534b0bb3fb5ec6 *inst/shinyApp/www/outline.png
b317f0eb72610fc88426ca16b9bc2fe6 *man/Dbf4myc.Rd
1ffd41af3d068f8e6ee1fb7773e92231 *man/MFAseq.Rd
bb18e88fed0fb96021914ee9f7b6d19d *man/TrepDF.Rd
4e08f635c376d85097513e655f9b4a27 *man/W303.Rd
1ad5fdf61ad28d2f2608aeba5e424104 *man/W303_G2.Rd
2d85d35f749460b167a22ec91ff6e693 *man/W303_S.Rd
30e88c696a1acfc47294bc1b9e158586 *man/W303norm.Rd
e4622dc1ee836770a3fb995e4840c00c *man/calcTrep.Rd
df083534ae2b9470b873dd45b6de5724 *man/compareRatios.Rd
3029bf2992267b62da36f186c9014b9c *man/guide.Rd
96f729c0060c959d3ad5fb3905e5719b *man/loadBed.Rd
16a92cddfca297b2cc9990460a896962 *man/makeGenome.Rd
98bf57e37dc050f45df88fb0db8aa80c *man/makeLabels.Rd
9a4058f78b9576688857c80de09fbd31 *man/makeRatio.Rd
8bb2c8b896ece39ab3b0d5fc7564eb8f *man/normaliseRatio.Rd
6075dfa12f4a24f47630e81ea7412661 *man/plotBed.Rd
1c75ff65c546687f4542533734908e3b *man/plotCoverage.Rd
6e6a5c2a73ef375198bf0f6710d0d8ef *man/plotGenome.Rd
bb9db9c9587388acd8d5ce6856abef1f *man/plotRatio.Rd
c1c56a54d5c8140e7d1f2ea9aebbf1f3 *man/plotTrep.Rd
23efb4ac63c563afb56b833a6d97ec39 *man/rmChr.Rd
3c23e622fdf7a41160b1166356ed7f78 *man/rmOutliers.Rd
0415cbcee2f39e44986bcbc4fa3111b8 *man/runGUI.Rd
f57d92f4388d8ef72987b6733f81f1af *man/sacCer3.Rd
3f4a998b4f893121d69b8edd5c908226 *man/smoothRatio.Rd
3c3fa61d885724162259e2dee805f0e3 *man/sortSeq.Rd
efc25724529d7f5f5e947163aae50929 *man/syncSeq.Rd
e1c668f750b1b392323c339c94b32f3d *man/trimRatio.Rd
9285a7368740e95a6d8c55cb3fc9633e *vignettes/Repliscope.Rmd
334a34fbe3d60cfeff534b0bb3fb5ec6 *vignettes/flavours.png
ae650bbbed66fe75198dd2a1caf626ce *vignettes/plotBed.png
9962e67337e27034a78899907961fa1a *vignettes/plotCoverage.png
30d9960c08b565804463c3ab54c09a73 *vignettes/plotGenome.png
3c4d1952154f4db6cf9b2c4aebae3c50 *vignettes/plotRatio.png
