25197a5a72b915b71c08749a6945a6ea *DESCRIPTION
e4a6893dc7bb08a976828750d4ca17da *NAMESPACE
ead0527962fd65af8b913c301d25c6cd *R/NetRep.R
c56f740914462cb754a7e0993429edcc *R/RcppExports.R
fa80d79d8f02bcd9c472e04d30bba98b *R/bigMatrix.R
d1c0d8074ce956bbf889fdf594ecbf77 *R/check-user-input.R
a9188e9b54a46d3adc42ab5d6929b865 *R/contingency.R
d9fef7660744be1b971d1168eb79d87d *R/disk-matrix-class.R
ce8e897d7f818b4288241125beb6276c *R/example-data.R
a34fb3ebd8e041fb8d52ed428e287576 *R/modulePreservation.R
5c622a1191096921362928982b40d40e *R/multi-machine.R
86f490913c2db3e400b55a0dafb9ea6a *R/networkProperties.R
fd824a3add0963f06b9b0bb3b0d065ff *R/orderNodes.R
9c1ee56ec3d8157736f4e0ae084af6a0 *R/orderSamples.R
5d6f7daba0656e5f8e10cfa23e814a71 *R/plot-functions.R
6a7f76d1b800413ff6a5b67bd2635dbd *R/plot-module.R
c1e9e7bcba4fc953748b7f637fc5ef06 *R/plot-topology.R
db6d3fb0328b0d2f52b1a719a2ef386c *R/plot-utils.R
0e954a5035776358c18831e0c216dd1d *R/pperm.R
198cf7f4cc3f6e9e0907448057c60363 *R/roxygen-defs.R
bacdb8e825a61b959bc93e3e35a12610 *R/utils.R
f961ea927d1e60bc3e62837b9c35e2e4 *README.md
757cee57dc6f8f50527734faaf38e74e *build/vignette.rds
8a3c7054b51a4ab390a3ca46304bfaa1 *data/NetRep.rda
c536bd1266cb482784e444933a92c77e *inst/CITATION
6b8262818a3f0540bf9d17fae0904f11 *inst/doc/NetRep.R
9b12ce5f202152e0308f6af33ef7b280 *inst/doc/NetRep.Rmd
520eddb85e3ce3ff30207c118451cd9c *inst/doc/NetRep.html
388ef966c242cd0db88078f056d9237c *man/CheckFinite.Rd
2bc765f0bf117143443f403555bf569a *man/IntermediateProperties.Rd
64a38c54cdd3a3fb8188d079abacf76d *man/IntermediatePropertiesNoData.Rd
da9d278071c35b5681dd7d9f19cde254 *man/NetProps.Rd
f55a7f303d0a6af85f5988513bbb38a7 *man/NetPropsNoData.Rd
440b04d6a9a7b48c709e7ed20d02baec *man/NetRep.Rd
2a0702c1f9ab1f792e23e12a7e17e95d *man/PermutationProcedure.Rd
6f1bbc85b8fdeeb5f6fd6ccd1ca95528 *man/PermutationProcedureNoData.Rd
665a021bb63840ff4b4166956a1cf2f1 *man/Scale.Rd
7bce758fb0a9f742a7fcb5ce9f058538 *man/addGradientLegend.Rd
8261b25417c1abf11ef4943c43d1a98f *man/any.disk.matrix.Rd
0d128fbdec697190c59bb02f30344cba *man/areColors.Rd
84ed4df37233bb068b5b1122a76ff94d *man/bigMatrix.Rd
fc5e47875ef906a5a469a4f51ad05674 *man/checkIsMatrix.Rd
8704501be3c7a65588845107fceb4b27 *man/checkPlotArgs.Rd
15b69859b0d7aa8fafedf7df4bd91e8b *man/combineAnalyses.Rd
15b8920b30c768b72375573c25a8e33f *man/combineAnalysesInternal.Rd
82ac1e4e14a948fd92c948ea747ed654 *man/common_params.Rd
6e853e6e630cb864b31928cb1b32b091 *man/contingencyTable.Rd
5c2c48df4d9577b5675081159a4415c6 *man/correlation.palette.Rd
cb22cd540ca518f132c376c979621ebc *man/disk.matrix.Rd
6c5dc15b1264dbd70f9d827fc649afff *man/emptyPlot.Rd
ac27a6c749a6652997c19db045abf014 *man/example-data.Rd
e83958b76d9567db33c2663930f793d1 *man/filterInternalProps.Rd
0db370989c7081129129634c36e38566 *man/forceLim.Rd
f31182b468e78422a65012e7c0667fcb *man/getColFromPalette.Rd
f6c9fe615741e01b2891c51a55f674b3 *man/getModuleBreaks.Rd
519097135f7f938099cf470bea56701a *man/getModuleMidPoints.Rd
f9e461091629b96024f0fc4852063463 *man/insert.nas.Rd
20951590a8f0150fb57fd3400063a44a *man/loadIntoRAM.Rd
3a9808cb374ce41228401f3a64cfec2a *man/matchsub.Rd
f9bed267879453fb3bccf75743d61426 *man/modulePreservation.Rd
6adf2adbf2f2eeee6bee7e10b03fba0b *man/netPropsInternal.Rd
a72288fb5efcc2597214faf7e31788e9 *man/network.palette.Rd
69ba205b75443d4c01a634485aad2031 *man/networkProperties.Rd
f63eef35f06edf66f6b0d7a587a5757c *man/nodeOrder.Rd
d7247886b4f1a732fac3851e7456f767 *man/nodeOrderInternal.Rd
19a6652687a8e129603f4882b1be28da *man/orderAsNumeric.Rd
b5ac1f599ba070c78b1ee56880b920db *man/orderModules_param.Rd
effd31bfccf2b20f159ae96339243639 *man/permp.Rd
1509d89d085a87591c4f96ae06da95b3 *man/permutation.Rd
c3582a666d7c7f94455320f52c78a146 *man/pkgReqCheck.Rd
58ed6c60ec5aceef37993424778f3cd9 *man/plotBar.Rd
df26c6ed63e1f091e37e168a194cd606 *man/plotModule.Rd
3de6bb0ba7332409a4f383154aced46d *man/plotMultiBar.Rd
db292678873542b899690026f07ab0e2 *man/plotProps.Rd
7aa40fa30dc269b51dc630aed8bcbabf *man/plotSquareHeatmap.Rd
cdfa32d054f585bce2d1dfe5611ab55d *man/plotTopology.Rd
972f120e033a300efbfc19ec704ab284 *man/plotTriangleHeatmap.Rd
e505c8cae241689572154bf89d11d6c5 *man/plot_params.Rd
c2f7665018221892d5d8ab399dc867ca *man/prettyPath.Rd
26ad4511eadf011c15758d2df43fb3f6 *man/processInput.Rd
e202e8c709451c83723bd53fd30bf179 *man/sampleOrder.Rd
c7b32f2875fd0562df204a02a308266b *man/sampleOrderInternal.Rd
0a4d4c4f3ea6e9d1ca1c3fa94f066ebd *man/simplifyList.Rd
76954e5c8f0224b8f0dd96e05646454c *man/simplify_param.Rd
34d3b6094ace17d756b75b1af7d9be5e *man/sortModuleNames.Rd
22da089f0c06ac573ec79238dda1c4fe *man/vCat.Rd
2e2ae70c71452055d6668c65757e761a *man/verifyDatasetOrder.Rd
fdcb2e0c2502ed804ae55e75cf88055c *src/Makevars
fdcb2e0c2502ed804ae55e75cf88055c *src/Makevars.win
9fcbdddc4b01eda5628b31e1b3d7b75d *src/NetRep_types.h
9bdb89d1e6c952c3fefd503c7c7e9758 *src/RcppExports.cpp
8343f4a19380d0f7ed00cd1b38878198 *src/checkFinite.cpp
e95070f31b30c800a68abdf5406ec17e *src/discProps.cpp
fea2deb022e6771e9096c8da7770bf3a *src/interrupt.cpp
b275203aad5cbe5b79337814ea751e28 *src/interrupt.h
5a3f6034b5f3ec518819a732b5f6b73f *src/netStats.cpp
abbda371d8ff76eb2e503430596e6520 *src/netStats.h
08bc36849201703ff8223d2433a8e114 *src/permutations.cpp
0dc522f825ad0b2f28961dc3c90653f4 *src/permutationsNoData.cpp
090f929bc97ff889cc38346237a5717b *src/properties.cpp
d9130934893801c89dc6368be9a4c962 *src/scale.cpp
7b132348bdc16c5ac0fc7271e4506d13 *src/scale.h
2585a6d8195bca7e4ee7d7b2542fd9bd *src/thread-utils.cpp
9fa9e24cd399bc1dc985f77be42c8471 *src/thread-utils.h
e232fac9d7ae77f20a0ea7bb43c00596 *src/utils.cpp
ef1f693981c63a626e738d85cb2b28de *src/utils.h
f6b3cf86c7bb8bb6b1d852e5d1bbbad6 *tests/testthat.R
3fdc40d64c491de9516641448eb5070c *tests/testthat/test1-main.R
b5cc0f94e90139c06fa0ea8c4859f734 *tests/testthat/test2-downstream-analysis.R
9b12ce5f202152e0308f6af33ef7b280 *vignettes/NetRep.Rmd
619655cb18040df60b60b5a622b4fffc *vignettes/NetRep_files/figure-html/correlation_heatmap-1.png
1fd7ad831a4001def1ae868cda92de40 *vignettes/NetRep_files/figure-html/disk_matrix_dry_run-1.png
05d3ebef1b69ed9bc1418531951b5ad0 *vignettes/NetRep_files/figure-html/disk_matrix_plot-1.png
1fd7ad831a4001def1ae868cda92de40 *vignettes/NetRep_files/figure-html/dry_run-1.png
55070e3cbe6a66b2d215869ba1c4b83d *vignettes/NetRep_files/figure-html/dry_run_customised-1.png
a78238634c44bc3975d324f35091312f *vignettes/NetRep_files/figure-html/mean_degree-1.png
4e69567b66b19f29bd2ce0a44db6a842 *vignettes/NetRep_files/figure-html/mean_degree_customised-1.png
1b8754e14062baa92e7b26f5754c2b1d *vignettes/NetRep_files/figure-html/modules_in_discovery-1.png
b44982df42a25a53539b6f0feed36216 *vignettes/NetRep_files/figure-html/modules_in_test-1.png
9dc05ca81c5b210607e3a2c73aa129ee *vignettes/NetRep_files/img/mod1.png
93db53ba2031d5e73348ad7131d4b505 *vignettes/NetRep_files/img/preservation.png
