96a72c91be013ea0b4fba6f51d7cf9ab *DESCRIPTION
984892fb2406947792021d87b1c2cd80 *NAMESPACE
a34063b83e9b42d5b39a36bcdc834a1c *NEWS.md
e60ded4b724a7ef73da6c3d46b128e18 *R/MotifEnrichment.R
961803e4d900da4d72904abf6ba3b283 *R/MotifSetEnrichmentAnalysis.R
fc63a53c409fff5fd023b5eb1787d34f *R/addAccessibilityShift.R
4e36a665dc90f09eb46fc43d07a12f03 *R/addMotifSet.R
4bc285483a47f366753a8bcb491cb313 *R/annotateTiles.R
44c411ac0a3a2ce6a29ec613b50ccd1b *R/calculate_intensities.R
000378c001a62a88c1ebb261e1fc0ea6 *R/callOpenTiles.R
1ffd4b7a4e12233c5a2e49b30c0ad0af *R/callTilesBySample.R
26f21b0a908c7b3016d5f03767ae9490 *R/co_accessibility.R
dc6090afa6d61cfd1b711277d724b8e1 *R/combineSampleTileMatrix.R
d44ace85805dfe1ce9aaf5b2b3b20c8a *R/determine_dynamic_range.R
14135dd531fd35b4e11adb0f2bebf02a *R/dimensionalityReduction.R
2670ffacecd9313c42d9f1144e35aec6 *R/dynamic_bins.R
9d9c9bfe53f60f0758485dedec3fd404 *R/estimate_differential_accessibility.R
3489db8bb9761f8d3297fd680d9e72a7 *R/extractRegion.R
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bf00b9526de0a591b9782b3108e3f6e1 *R/getAltTSS.R
1a6a47dd8e766061af1d2565ad12958b *R/getCellPopMatrix.R
ba99424e42149cc4951ff14ddcfab86d *R/getCoAccessibleLinks.R
879e338ea7043719eaaf3a29b88e2ed6 *R/getCoverage.R
2fc18c71537b8742b415379592cc8e6b *R/getDifferentialAccessibleTiles.R
ed55ebe3efa0a772e0b75d8cd77c2a71 *R/getPopFrags.R
1deecaac8dfaf93c733dd39dc1ec831c *R/getSampleTileMatrix.R
d84bc5b5e93e68acaa40ac34998383de *R/make_prediction.R
19e8c6a1c0b1ba97968094958ed7a549 *R/models.R
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d5f72e4b1f2c5277a1896bf84e58e4e4 *R/plotRegion.R
2ca993dd7251e5bbc923ae26020db1eb *R/plottingUtils.R
270d3b1e331f6f9bf450e04eb1bd0196 *R/runLMEM.R
ad06bd7632d51bb55be2b5f9c8ad87d9 *R/runZIGLMM.R
56de3a81ed824f1f6b418f377785b3e9 *R/singlePopulationConsensusTiles.R
77cbb6d220e09e4c11953313b4f87db3 *R/singlePopulationSampleTileMatrix.R
bd91f7b608c1f1461304875fe0c237db *R/subsetMOCHAObject.R
553f9205bc1a6c86636d7168f391f166 *R/sysdata.rda
2908368ebc44d2475bc0f132b026c2a5 *R/testCoAccessibility.R
520de2530279d1c24cbab4b7625a7be8 *R/two_part.R
637c4cd1a80dd8a9cbb2ae2883466896 *R/utils.R
f46364ffd636e7a1bbfb75ab8a093a87 *R/zi_spearman.R
1af0fa7bade99edcf9df0a91f4d4dd9a *README.md
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