649950435c712736eb850976e0f68abf *DESCRIPTION
a22b7d4bb927332825c4b99bd8bb7095 *NAMESPACE
f10bbeec62e228e27720b91fb1b6e618 *R/DepLogoR.R
aaf12d74ec0139c5b57f32d9e56f7435 *R/seqLogo.R
32ae9a250b9c60699b50dd51686634c3 *build/vignette.rds
5715e7774c9d62fbc1f631049c438c38 *inst/doc/DepLogo.R
e5fd585ab9e956c49cd3145d447272c0 *inst/doc/DepLogo.Rmd
5d243165a7d90a6bd06bfacd5c203329 *inst/doc/DepLogo.html
cf1ad1f43ead6395d52ce7daac739e9c *inst/extdata/Glycos_trans_3N.ann
fa5ee4226b70e07120985c090ab7d3ae *inst/extdata/cjun.txt
78b00d1b6db74d1f541cd533a35ce7ff *inst/extdata/long_bak.txt
3bf2d3d58aaf4e48ad0d4a2aef2c7705 *inst/extdata/nrsf.txt
50e1d6d6f4ee9e4e1e9098aa54a1350a *inst/extdata/pwm_bak.txt
70e86fec552feab13b6611f755663fd2 *inst/extdata/wam2_bak.txt
7d69526b3b8d8e361544c8aac373aff9 *inst/extdata/wam_2deps.txt
7ab5e9fc1895b08fda9e06d93d93a528 *inst/extdata/wam_3deps.txt
e987916594da24196623666ed81858b2 *inst/extdata/wam_4deps.txt
d4bcbaad8cba15f5efe68cd102ac9f52 *inst/extdata/wam_5deps.txt
d84e0236b42f818f5821a2bca74fb08e *inst/extdata/wam_bak.txt
1a1de85eccb0dd3787e2d472a4b1b040 *man/Alphabet.Rd
23b5d718a76ba7e7fef0ae2c2bb63e11 *man/DLData.Rd
dba116107147e7069742de460c032c52 *man/alphabet.dna.Rd
a2a795f90867788de7d431a68029b838 *man/alphabet.dna.gap.Rd
429c774eb9c9894d201939911d3628f1 *man/alphabet.protein.Rd
5538ae40f90fa3fd72921cf19de370a8 *man/alphabet.protein.gap.Rd
b6e625ba77272cfde70a6420d5572b35 *man/alphabet.rna.Rd
4e8153db4b698a061c2ea0475b90a8d9 *man/alphabet.rna.gap.Rd
63259d7176455248e285249a00532655 *man/colorchart.Rd
697595b87c29c3e5aef89f65a66f157f *man/deprects.Rd
fbaa068ceb94aaf3c5e9697b1929adc1 *man/filter.by.conservation.Rd
4cd5326eafc4a1276bbb0916407de086 *man/filter.by.dependencies.Rd
6f4ff44fb4ea22748d25dd719dc8e560 *man/filter.by.gaps.Rd
a5f82164b775aa8142062de95e9b3d84 *man/filterColumns.Rd
1369911569bcde797184b8a2d92c191b *man/getDeps.Rd
daef2295a51791faf4f6c309655ba6a9 *man/getPWM.Rd
0f032740488bc2208a42ba39bc71fd8c *man/logo.Rd
632a6c5c7a2761e2537ed2d3c546fb80 *man/partition.Rd
f66fbf6a6f844420c4db6f6ee1783d03 *man/plotBlocks.Rd
5248707b94cce56c43add7f5a1f64f8b *man/plotDeparcs.Rd
417a02f4f3e1ecfcec1448404115ca2d *man/plotDeplogo.Rd
20796e3142f4215a79d53b6126c60e4f *man/plotDepmatrix.Rd
4b0c7578099be39fdcb095cebea6a0eb *man/replaceColors.Rd
c9d5bfc875eadcd8d2bdd228243cd6d9 *man/revcom.Rd
8db783ac45de134268e0fe4dacf84f65 *man/subBoxes.Rd
104e510d582f6bc96fb0e5806b15867a *man/subLines.Rd
9ef3409d5e5ea3358dd0e734da45d2ff *man/suggestColors.Rd
3820c4448191c0d555d980f47c02ce30 *man/summary.DLData.Rd
196ac48d9c48eb94e73609e678febe5f *tests/testthat.R
bf5197168924686b6a0ddabb2b1138f0 *tests/testthat/Rplots.pdf
505eb5f556e754bc6feb5a8f4b68073e *tests/testthat/test-DLData.R
6eacf795f8c7ca4ed8091e5e21772fdb *tests/testthat/test-Dependencies.R
4c5479d9397185af9d47fe814efeaa60 *tests/testthat/test-Filter.R
09aa627fa522fb783bc4a5a14103aba7 *tests/testthat/test-Partitioning.R
9b9722dd22054b2be3995461cea6cd68 *tests/testthat/test-Plots.R
829af570ff24de394329cad571104436 *tests/testthat/test-Revcom.R
e5fd585ab9e956c49cd3145d447272c0 *vignettes/DepLogo.Rmd
9d8ac1f980ea8c3d944b0ade08ffea8d *vignettes/annotated_deplogo.png
60220e6756f54932386430cdfac28e34 *vignettes/references.bib
