6b5d596fc2792e1b536667bb9ff21e08 *DESCRIPTION
7126eedcec9cc2a093b69445c92d9ae1 *LICENSE
6be90352e60e43c6c0a89e6963366704 *NAMESPACE
56b29f0b990a589dac8ab56fd19bcedb *NEWS.md
4c027bbcbd2a6c0d8a87f1e82580391a *R/CLONETv2_basic_functions.R
e26124dd7f357c81e5e295c15a917a46 *R/CLONETv2_check_ploidy_and_admixture.R
39809bd9997479ccfebfe8691d20cf28 *R/CLONETv2_compute_admixture.R
4e74dbd2e074c2ca3700c7c203e17a2f *R/CLONETv2_compute_allele_specific_scna_table.R
7bd825d59f69f39bbfa76ba37cd44699 *R/CLONETv2_compute_beta_table.R
13a8a0bbe4dc2f00aeb5a26d2c108657 *R/CLONETv2_compute_ploidy.R
e42aaf11c376a44d25576e9996faa25a *R/CLONETv2_compute_scna_clonality_table.R
a5d9f0f1524808fec7bbd06fea542137 *R/CLONETv2_compute_snv_clonality.R
a678e738985cd4058f64b66203337166 *R/CLONETv2_data.R
051ea0c5afb433db30257b5a940d0bdc *R/sysdata.rda
40350ebff249f89ac05634bc4af0c260 *inst/sample.seg
40350ebff249f89ac05634bc4af0c260 *inst/sample1.seg
f905be0204ffeffc1060c99713ef2c10 *inst/sample1_normal_pileup.tsv.gz
a8d0859291daa88a64f3389a783342e3 *inst/sample1_snv_read_count.tsv
6cac7856d8249491d0c7b01803b52773 *inst/sample1_tumor_pileup.tsv.gz
96f8e19e2a23f4a904a27fcdfe6fff51 *inst/sample2.seg
71013a0f59155e958ce22091430734c5 *inst/sample2_normal_pileup.tsv.gz
bd4365c507f5e35f709b75c26592963e *inst/sample2_snv_read_count.tsv
f13a83c85d6957554d820494477aa891 *inst/sample2_tumor_pileup.tsv.gz
38dc7b0f2e643ee30ca6f0bcffa855c8 *inst/sample3.seg
ae876ff4e6cbbbcb824dfd3939f4a47c *inst/sample3_normal_pileup.tsv.gz
4e952015719487fc272eca7acacf1c6b *inst/sample3_snv_read_count.tsv
831c0285a84585230a1f3796561c7b4d *inst/sample3_tumor_pileup.tsv.gz
003153f72c8ac63e4680ef52d0d4aa8d *inst/sample4.seg
423917a61f0c68ce11b9a5466f47108b *inst/sample4_normal_pileup.tsv.gz
d1e7276ce7715e688594921bcb4a1e55 *inst/sample4_snv_read_count.tsv
ea785e3eedd57483d23142c7b9cb2d8c *inst/sample4_tumor_pileup.tsv.gz
e5e9b85b3ad0eb80f00862f4cf85293a *inst/sample5.seg
a2c9c76562e7e99145ef1680b01ab254 *inst/sample5_normal_pileup.tsv.gz
c97d2f56b4a34b0464c5eb8759376cf6 *inst/sample5_snv_read_count.tsv
2d122599a3c087a8cd6eccfb20e0c92c *inst/sample5_tumor_pileup.tsv.gz
39f24797c6646fe83be98d7dbba1f7cf *inst/sample_normal_pileup.tsv
a8d0859291daa88a64f3389a783342e3 *inst/sample_snv_read_count.tsv
f6430e82da2bd5fa2568a4b2c6fdf2fa *inst/sample_tumor_pileup.tsv
b4bf8d76e19504ed7cade70f87855243 *man/CLONETv2-package.Rd
7472688f4a275609e2bb0cdbdfe79677 *man/adm_table_toy.Rd
89decad013371a2f711fbafad0b96ea0 *man/allele_specific_cna_table_toy.Rd
7f6d22791da678716ef1dc3c1e3b8b46 *man/bt_toy.Rd
e2a5aca3c25e699b36aec452f1c88558 *man/check_ploidy_and_admixture.Rd
81ac8794f5caf22b605664317c10592d *man/compute_allele_specific_scna_table.Rd
9f327ff155ea7750b1d3828770869dd5 *man/compute_beta_table.Rd
aef939480cfaac00412520da124c8129 *man/compute_dna_admixture.Rd
a2f75f06218a6bcfcd4008790bb3e4ba *man/compute_ploidy.Rd
850ec3e1fae8285239a463b3e1af0c63 *man/compute_scna_clonality_table.Rd
f232116a1e9b0332995fa84ab0db727a *man/compute_snv_clonality.Rd
e21ac1da2dda323c63e0b9f518237657 *man/error_table.Rd
0ad0c6316c1de36e7efc0e8aceb32310 *man/pileup_normal_toy.Rd
3928cfe234e970868b712c2ac5b736cd *man/pileup_tumor_toy.Rd
6a381d5c1bd363219995b767e7e035a9 *man/pl_table_toy.Rd
c571b7a639db37ea6c8fa6dd3f3db7a3 *man/scna_clonality_table_toy.Rd
9ef7938c1a8e364a4256028cf8ba7653 *man/seg_tb_toy.Rd
0768d2e0ce7dfada59e206d972c90f7c *man/snv_clonality_table_toy.Rd
402ee47ef246f7c6841ece1a0c33b1b1 *man/snv_reads_toy.Rd
