9366b0e11f076f4f0322cffa713bd16a *DESCRIPTION
a4cc8b10284cb5fdc15f9b718d1f6a8d *NAMESPACE
41e2900440d1a0c8c88eb32034fc26d6 *R/BreedingSchemeLanguage.R
6d3f97b464447412a287ae8a8b5aaee6 *R/calcAmatrix.R
9bb34ac5cc5150febc8eec8e8fe9db5b *R/calculationFunc.R
87da655ceeb4e8b799c03c60099e3dd8 *R/cross.R
c6f7e6e9360b2cb1a3c842cf4e19182a *R/crossingFunc.R
7abfa4c3797e5a8a9281999d765ce0b5 *R/defineCosts.R
f1ff031bc8f5cb28f4e6ebf0438eee76 *R/defineSpecies.R
39af57fa369f9af451dcefbf1c969157 *R/defineVariances.R
b035ab4309cc9b642724ed3049a6c3c8 *R/doubledHaploid.R
e90f5acb4a008592a3578c5d79378aee *R/genotype.R
4d94669e4516926b56d9e13803f169de *R/getCoalescentSim.R
f73d69c73da27a04d3fbd2b51739b148 *R/importData.R
04b9b6594ad878c61f8cd4aaeb206157 *R/initializePopulation.R
aedfe3162b0a713ad323aecba838f46e *R/makeMap.R
ae8b3972425cbe9df171e3b53e765ed9 *R/outputResults.R
a6d2e3c737404b1edcc4245f2b375ce9 *R/phenotype.R
95238dbb9a27b31cc226bfc2f8d6f7e2 *R/plotData.R
2c6070dc4b2e7cdd6a034aebde9281ee *R/predictValue.R
885e235b751207f35d8028541bf07ce7 *R/select.R
ec4908ae6badedcdb75233aa68a4565d *R/selfFertilize.R
2a28d29543f6cc546777e39ba609c108 *R/testParameterOptimality.R
2bdef28feca5c852581dc9064ad9916a *README.md
902ad09a37f83dd12c22efff8feac733 *build/vignette.rds
a159eb35b0d4b198a8361d11b35c85de *inst/CITATION
f33a1337713675291aacc5a87e062795 *inst/COPYRIGHTS/GENOME
2f665a5780775a434dd928407535eb6a *inst/COPYRIGHTS/twister
6961badb52ee8edecc296a8a23e2d219 *inst/ChangeLog.txt
e70293b5190ee0a989ab0e4d5bc04400 *inst/Manual.pdf
913f003ce831eac918634967ac27245a *inst/doc/Intro_to_BSL.R
5070294ee21131dbc366b82f368aed32 *inst/doc/Intro_to_BSL.Rmd
42a9ae53467134e5a87dc54f306c403b *inst/doc/Intro_to_BSL.html
66ba8a64e9dbcc7f9b3fd1dd72870558 *inst/doc/Load_existing_data.R
847a395f8d8a6b3ffea69767f9130d74 *inst/doc/Load_existing_data.Rmd
c5c739dd021253022784d843f9dcba22 *inst/doc/Load_existing_data.html
7620d6c667c9c540fdf8f1f5d0b4a6fc *inst/doc/Optimize_parameter_vector.R
018b0d0b873bd83b935231962c9d3170 *inst/doc/Optimize_parameter_vector.Rmd
480c9ed99ff398e9af8d531f105339a9 *inst/doc/Optimize_parameter_vector.html
d8a0321d475f27a5c8150c5b2271494a *inst/doc/Within_family_selection.R
5db5e8e8ac73145efe33ec08dcad5b9d *inst/doc/Within_family_selection.Rmd
cdb09de58ee7de2e234d7a55f632e92c *inst/doc/Within_family_selection.html
74bbdd0dd4cc171b0865f3b472da32c7 *inst/extdata/exampleHapMapFile.hmp
7fa935f3dccb29a19623e1ab21f4aee3 *inst/extdata/optimizationScheme.R
3071116ce12ae5f01bce7ba53228406d *inst/extdata/optimizationSchemeData.RData
8be7e0f0a0fa58bd486868b3bebd5437 *man/DH.Rd
1624c421424f671faf51e8c571cae2f5 *man/addProgenyData.Rd
887f221a91004720b85da61fef8a27f5 *man/calcAmatrix.Rd
ba7e722be6ef693a736e3f269669289c *man/calcGenotypicValue.Rd
21fef866ec6e600609162c14a4c2ffff *man/calcPhenotypicValue.Rd
1f83b9f1d756c371e289e09e54a43d21 *man/cross.Rd
58a93dad3315fea9397d9e944aaddaf6 *man/defineCosts.Rd
cb117c68f722a4349458fd46c9cf7a4a *man/defineSpecies.Rd
2a787cdbf57d165f46801509132157ec *man/defineVariances.Rd
11288489c6944e12f784cad699604352 *man/doubledHaploid.Rd
4e6c89143f376fae99d6d163da933d5f *man/genotype.Rd
7ad38919b8703c3c0de61297ae1f2898 *man/getCoalescentSim.Rd
ed2edf09ad19cc53ba5ef7c0b2527783 *man/initializePopulation.Rd
996fcee29074754d682d62803a25796c *man/makeDHs.Rd
7177b6292a6dfb7f2a5267f70b3e41f5 *man/makeGamete.Rd
c3851ce559df57cd4ea4f381da9ca213 *man/makeMap.Rd
54d66601fff48d65232c46f6b8e20455 *man/makeProgenies.Rd
89588ad4f4c72f395684a69723b31cb9 *man/makeProgeny.Rd
ae1c53e22bcb05bf3b8ffc5861fecc9c *man/makeSelfs.Rd
0e19517abf76d3b43cf57a13cb224e55 *man/outputResults.Rd
0c1106165d5735943b3384072e1b3e52 *man/pedigreeMate.Rd
1a8c109f65b19bf0293db4d64186778a *man/phasedHapMap2mat.Rd
a8cfc08685421bd7fcff35d74d333202 *man/phenotype.Rd
7ef4ab1e1eae2c4712596963f4a07156 *man/plotData.Rd
9734dc409661bbe5f18dcc11bd9f8a8d *man/predGameteMeanVar.Rd
0268bfdf7a124ab14be7a552a61afc45 *man/predictValue.Rd
87e9226bf76a4246dcf08152bc727a8d *man/randomMate.Rd
0d11f41a44193c3d4c5448057a02b137 *man/randomMateAll.Rd
4f7c71a1ffb10a635f470a8739360642 *man/randomMateNoFam.Rd
1f0fc4da0073cdef1cb771f97047226f *man/select.Rd
e0020e85f477a809cfcf5cb20f8a26ae *man/selfFertilize.Rd
dd0f830e29a9c4cd6aa4d68d75571f48 *man/simHapMap.Rd
229721cbca14f2dfbc4d50df330147d6 *man/testParameterOptimality.Rd
b2187b9e8df45f8f59ddde55ba460370 *src/Error.cpp
ad0baadd735c59feb7ca4fcc76537427 *src/Error.h
8206a09a8ca68c4ead8eea70b818b659 *src/Main.cpp
8f566d214eb787da6f132eb794ed3762 *src/MathConstant.h
b01cf9775166eb4a48b0a5b6115190ed *src/Random.cpp
56f1df304a315b0f20df07ca84df2ea2 *src/Random.h
f35ebefb99f81f9b3e6711b64554d8b5 *src/genome.cpp
a6f5346d16ce65d9740bd8b9e1009a2e *src/genome.h
dc9aac351e41f8fa47eb1c71254b2200 *src/init.c
50dc14fc3b8c68ce100bf456dacf6bb0 *src/stochastic.cpp
81719184a4ce6903bcaae670f18eb900 *src/stochastic.h
5070294ee21131dbc366b82f368aed32 *vignettes/Intro_to_BSL.Rmd
847a395f8d8a6b3ffea69767f9130d74 *vignettes/Load_existing_data.Rmd
018b0d0b873bd83b935231962c9d3170 *vignettes/Optimize_parameter_vector.Rmd
5db5e8e8ac73145efe33ec08dcad5b9d *vignettes/Within_family_selection.Rmd
