# A Functional Data Analysis Package for Spatial Single Cell Data

## Documentation for package ‘mxfda’ version 0.2.2-1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

add_summary_function | Add Summary Function
bivariate | bivariate
entropy | Entropy
extract_entropy | extract_entropy
extract_fpca_object | Extract FPCA object
extract_fpca_scores | Extract FPCA scores
extract_model | Extract Model
extract_spatial_summary | Summarise spatial data in mxFDA object
extract_summary_functions | Extract Summary Functions
extract_surface | Extract Surface
filter_spatial | Filter Spatial data
lung_df | Multiplex imaging data from a non-small cell lung cancer study.
lung_FDA | Multiplex imaging data from a non-small cell lung cancer study
make_mxfda | Make mxFDA class object
ovarian_FDA | Multiplex imaging data from an ovarian cancer tumor microarray
plot.afcmSurface | Plot afcm object
plot.lfcmSurface | Plot lfcm surface
plot.mxFDA | Plot mxFDA object
plot.sofr | Plot sofr object
plot_fpc | Create plot of mean +/- scaled eigenfunctions from FPCA
plot_mfpc | Create plot of mean +/- scaled eigenfunctions from FPCA
run_fcm | Run Function Cox Models
run_fpca | run_fpca
run_mfcm | Run function Cox models for data with multiple samples per subject
run_mfpca | run_fpca
run_sofr | Run Scalar on Function Regression
summary.mxFDA | Summary method for object of class 'mxFDA'
univariate | univariate