# Mediterranean Forest Simulation

## Documentation for package ‘medfate’ version 5.0.0

- DESCRIPTION file.

## Help Pages

defaultControl | Control parameters for simulation models
defaultManagementArguments | Default forest management actions
defaultManagementFunction | Default forest management actions
defaultSoilParams | Default soil parameters
droughtStress | Drought stress indicators
emptyforest | Creation of an empty forest
evaluation | Evaluation of simulations results
evaluation_metric | Evaluation of simulations results
evaluation_plot | Evaluation of simulations results
evaluation_stats | Evaluation of simulations results
evaluation_table | Evaluation of simulations results
exampleforest | Description of a forest stand.
exampleforest2 | Description of a forest stand.
examplemeteo | Example daily meteorology data
exampleobs | Example observed data
extract | Extracts model outputs
fireHazard | Fire hazard
fire_behaviour | Fire behaviour functions
fire_FCCS | Fire behaviour functions
fire_Rothermel | Fire behaviour functions
fordyn | Forest dynamics
forest | Description of a forest stand.
forest_mapShrubTable | Map forest plot data
forest_mapTreeTable | Map forest plot data
forest_mapWoodyTables | Map forest plot data
forest_mergeHerbs | Forest complexity reduction
forest_mergeShrubs | Forest complexity reduction
forest_mergeTrees | Forest complexity reduction
forest_reduceToDominant | Forest complexity reduction
forest_simplification | Forest complexity reduction
fuel_FCCS | Fuel stratification and fuel characteristics
fuel_properties | Fuel stratification and fuel characteristics
fuel_stratification | Fuel stratification and fuel characteristics
growth | Forest growth
growthInput | Input for simulation models
growth_day | Single-day forest growth
modelInput | Input for simulation models
modifyCohortParams | Modify parameters
modifyInputParams | Modify parameters
modifyParams | Modify parameters
modifySpParams | Modify parameters
multiple_runs | Multiple model runs and function factories for optimization routines
optimization | Multiple model runs and function factories for optimization routines
optimization_evaluation_function | Multiple model runs and function factories for optimization routines
optimization_evaluation_multicohort_function | Multiple model runs and function factories for optimization routines
optimization_function | Multiple model runs and function factories for optimization routines
optimization_multicohort_function | Multiple model runs and function factories for optimization routines
plot.aspwb | Plots simulation results
plot.fordyn | Plots simulation results
plot.forest | Plot forest attributes
plot.growth | Plots simulation results
plot.growth_day | Plots simulation results for one day
plot.pwb | Plots simulation results
plot.pwb_day | Plots simulation results for one day
plot.soil | Soil water curves
plot.spwb | Plots simulation results
plot.spwb_day | Plots simulation results for one day
poblet_trees | Example forest inventory data
print.summary.forest | Summary of forest structure
resetInputs | Reset simulation inputs
resistances | Soil-plant resistances
runners | Rcpp module: Running simulations
SFM_metric | Standard fuel models (Albini 1976, Scott & Burgan 2005)
shinyplot | Shiny app with interactive plots
shinyplot.aspwb | Shiny app with interactive plots
shinyplot.fordyn | Shiny app with interactive plots
shinyplot.forest | Plot forest attributes
shinyplot.growth | Shiny app with interactive plots
shinyplot.growth_day | Shiny app with interactive plots
shinyplot.pwb | Shiny app with interactive plots
shinyplot.pwb_day | Shiny app with interactive plots
shinyplot.spwb | Shiny app with interactive plots
shinyplot.spwb_day | Shiny app with interactive plots
shrub2forest | Single-cohort forests
soil | Soil initialization
soil_redefineLayers | Redefine soil layer widths
SpParams | Data tables with species parameter definitions and values
SpParamsDefinition | Data tables with species parameter definitions and values
SpParamsMED | Data tables with species parameter definitions and values
spwb | Soil-plant water balance
spwbInput | Input for simulation models
spwb_day | Single-day soil-plant water balance
summary.aspwb | Summarize simulation results
summary.fordyn | Summarize simulation results
summary.forest | Summary of forest structure
summary.growth | Summarize simulation results
summary.pwb | Summarize simulation results
summary.soil | Soil initialization
summary.spwb | Summarize simulation results
trait_family_means | Parameter average values
tree2forest | Single-cohort forests
utils_ldrExploration | Optimization of root distribution
utils_ldrOptimization | Optimization of root distribution
utils_rockOptimization | Optimization of rock fragment content
waterUseEfficiency | Water use efficiency