Package: MAGEE
Version: 1.4.5
Date: 2026-02-11
Title: Mixed Model Association Test for GEne-Environment Interaction
Authors@R: c(person("Xinyu", "Wang", role = "aut", email = "xinyu.wang@uth.tmc.edu"),
             person("Han", "Chen", role = c("aut", "cre"), email = "hanchenphd@gmail.com"),
             person("Duy", "Pham", role = "aut", email = "duy.t.pham@uth.tmc.edu"),
             person("Kenneth", "Westerman", role = "ctb", email = "KEWESTERMAN@mgh.harvard.edu"),
             person("Cong", "Pan", role="aut", email = "cong.pan@uth.tmc.edu"),
	     person("Eric", "Biggers", role = c("ctb", "cph"), comment = "Author and copyright holder of included libdeflate library"),
	     person("Tino", "Reichardt", role = c("ctb", "cph"), comment = "Author and copyright holder of threading code used in the included Zstandard (zstd) library"),
	     person("Meta Platforms, Inc. and affiliates", role = "cph", comment = "Copyright holder of included Zstandard (zstd) library"))
Description: Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) <DOI:10.1002/gepi.22351>.
License: GPL (>= 3)
Copyright: See COPYRIGHTS for details.
Imports: Rcpp, Matrix, parallel, MASS, foreach, GMMAT, CompQuadForm,
        data.table
Suggests: doMC, SeqArray, SeqVarTools, testthat
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
Depends: R (>= 3.2.0)
NeedsCompilation: yes
Author: Xinyu Wang [aut],
  Han Chen [aut, cre],
  Duy Pham [aut],
  Kenneth Westerman [ctb],
  Cong Pan [aut],
  Eric Biggers [ctb, cph] (Author and copyright holder of included
    libdeflate library),
  Tino Reichardt [ctb, cph] (Author and copyright holder of threading
    code used in the included Zstandard (zstd) library),
  Meta Platforms, Inc. and affiliates [cph] (Copyright holder of included
    Zstandard (zstd) library)
Maintainer: Han Chen <hanchenphd@gmail.com>
Packaged: 2026-02-12 05:51:01 UTC; hc4978
Repository: CRAN
Date/Publication: 2026-02-12 08:20:37 UTC
Built: R 4.5.3; x86_64-w64-mingw32; 2026-07-17 10:48:59 UTC; windows
Archs: x64
