.archiveScmRunFolder	dot-archiveScmRunFolder
.fastOptimization_mode	dot-fastOptimization_mode
.is_numeric	dot-is_numeric
.loadScmFitResults	dot-loadScmFitResults
.mcp_qrpem_time_varying_covariate_check	dot-mcp_qrpem_time_varying_covariate_check
.normalizeConditionNumber	dot-normalizeConditionNumber
.parseDmpFile	dot-parseDmpFile
.parseEffectPair	dot-parseEffectPair
.parseEnableIDs	dot-parseEnableIDs
.readFitSummary	dot-readFitSummary
.reconstructScmModel	dot-reconstructScmModel
.require_mcp_deps	dot-require_mcp_deps
.validateTextualPml	dot-validateTextualPml
acceptAllEffects	acceptAllEffects
addADDL	addADDL
addCovariate	addCovariate
addDoseCycle	addDoseCycle
addExtraDef	addExtraDef
addInfusion	addInfusion
addLabel	addLabel
addMDV	addMDV
addReset	addReset
addReset,NlmePmlModel-method	addReset
addSecondary	addSecondary
addSecondary,NlmePmlModel-method	addSecondary
addSteadyState	addSteadyState
addToErrorModel	addToErrorModel
advance_sequential_lrt	advance_sequential_lrt
analyze_nonmem_control	analyze_nonmem_control
BootNlmeJob-class	SimpleNlmeJob-class
bootstrap	bootstrap
BootstrapParams	BootstrapParams-class
BootstrapParams-class	BootstrapParams-class
cancelJob	cancelJob
cancelJob,SimpleNlmeJob-method	cancelJob
certara_mcp_tools	certara_mcp_tools
checkHostParams	checkHostParams
check_ofv_parity	check_ofv_parity
cleanup_mcp_runs	cleanup_mcp_runs
collectJob	collectJob
collectJob,BootNlmeJob-method	collectJob
collectJob,FitNlmeJob-method	collectJob
collectJob,NlmeSimulationJob-method	collectJob
collectJob,ProfileNlmeJob-method	collectJob
collectJob,ShotgunNlmeJob-method	collectJob
collectJob,SortByNlmeJob-method	collectJob
collectJob,StepwiseNlmeJob-method	collectJob
collect_nlme_job	collect_nlme_job
collect_sequential_lrt	collect_sequential_lrt
colMapping	colMapping
compare_nlme_jobs	compare_nlme_jobs
configure_blq_handling	configure_blq_handling
confirm_pml_structure	confirm_pml_structure
copyModel	copyModel
covariateEffect<-	covariateEffect-set
CovariateEffectModel	CovariateEffectModel-class
CovariateEffectModel-class	CovariateEffectModel-class
covariateModel	covariateModel
covariateNames	covariateNames
covariatePartsString	covariatePartsString
createModelInfo	createModelInfo
create_metamodel_from_model	create_metamodel_from_model
create_model_from_metamodel	create_model_from_metamodel
dataMapping	dataMapping
deleteSecondary	deleteSecondary
deleteSecondary,NlmePmlModel-method	deleteSecondary
doseNames	doseNames
draft_pml_from_nonmem	draft_pml_from_nonmem
editModel	editModel
emaxmodel	emaxmodel
emaxmodel_MappingParameters	emaxmodel_MappingParameters
engineParams	engineParams
extract_mmdl	extract_mmdl
ExtraDoseDataType	ExtraDoseDataType-class
ExtraDoseDataType-class	ExtraDoseDataType-class
ExtraDoseItem	ExtraDoseItem-class
ExtraDoseItem-class	ExtraDoseItem-class
extraDoseLines	extraDoseLines
extraDoseNames	extraDoseNames
fitmodel	fitmodel
FitNlmeJob-class	SimpleNlmeJob-class
fixedEffect	fixedEffect
generatePML	generatePML
getRandomEffectNames	getRandomEffectNames
getSCMResults	getSCMResults
getThetas	getThetas
get_fit_summary	get_fit_summary
get_nlme_job_status	get_nlme_job_status
get_project_workflow_status	get_project_workflow_status
get_saved_analysis_plan	get_saved_analysis_plan
get_sequential_lrt_status	get_sequential_lrt_status
hostParams	hostParams
imputeMissingCovariates	imputeMissingCovariates
imputeMode	imputeMode
initColMapping<-	initColMapping
initColMapping<-,NlmePmlModel-method	initColMapping
initFixedEffects	initFixedEffects
initFixedEffects,NlmePmlModel-method	initFixedEffects
initFixedEffects<-	initFixedEffects
initFixedEffects<-,NlmePmlModel-method	initFixedEffects
inspect_nlme_model	inspect_nlme_model
inspect_pk_dataset	inspect_pk_dataset
inspect_textual_model	inspect_textual_model
interpret_parameters	interpret_parameters
isPopulation	isPopulation
isPopulation,NlmePmlModel-method	isPopulation
isPopulation<-	isPopulation
isPopulation<-,NlmePmlModel-method	isPopulation
is_cov_numeric_value	is_cov_numeric_value
is_engine_missing_token	is_engine_missing_token
linearmodel	linearmodel
linearmodel_MappingParameters	linearmodel_MappingParameters
listCovariateEffectNames	listCovariateEffectNames
listCovariateEffectNames,NlmePmlModel-method	listCovariateEffectNames
listSCMRuns	listSCMRuns
list_builtin_model_constructors	list_builtin_model_constructors
list_mcp_runs	list_mcp_runs
list_nlme_artifacts	list_nlme_artifacts
list_sequential_lrt_sessions	list_sequential_lrt_sessions
loadModel	loadModel
modelVariableNames	modelVariableNames
NlmeColumnMap	NlmeColumnMap-class
NlmeColumnMap-class	NlmeColumnMap-class
NlmeColumnMapping	NlmeColumnMapping-class
NlmeColumnMapping-class	NlmeColumnMapping-class
NlmeCovariateParameter	NlmeCovariateParameter-class
NlmeCovariateParameter-class	NlmeCovariateParameter-class
NlmeCovarItem	NlmeCovarItem-class
NlmeCovarItem-class	NlmeCovarItem-class
NlmeDataset	NlmeDataset-class
NlmeDataset-class	NlmeDataset-class
NlmeDoseMapping	NlmeDoseMapping-class
NlmeDoseMapping-class	NlmeDoseMapping-class
NlmeEmaxParameters	NlmeEmaxParameters-class
NlmeEmaxParameters-class	NlmeEmaxParameters-class
NlmeEngineExtraParams	NlmeEngineExtraParams
NlmeEngineExtraParams-class	NlmeEngineExtraParams-class
NlmeErrorModel	NlmeErrorModel-class
NlmeErrorModel-class	NlmeErrorModel-class
NlmeIndirectParameters	NlmeIndirectParameters-class
NlmeIndirectParameters-class	NlmeIndirectParameters-class
NlmeJobStatus	NlmeJobStatus
NlmeObservationVar	NlmeObservationVar-class
NlmeObservationVar-class	NlmeObservationVar-class
NlmeParallelHost	NlmeParallelHost-class
NlmeParallelHost-class	NlmeParallelHost-class
NlmeParallelMethod	NlmeParallelMethod-class
NlmeParallelMethod-class	NlmeParallelMethod-class
NlmeParamsMapping	NlmeParamsMapping-class
NlmeParamsMapping-class	NlmeParamsMapping-class
NlmePkParameters	NlmePkParameters-class
NlmePkParameters-class	NlmePkParameters-class
NlmePmlModel	NlmePmlModel-class
NlmePmlModel-class	NlmePmlModel-class
NlmeRemoteExecutor	NlmeRemoteExecutor-class
NlmeRemoteExecutor-class	NlmeRemoteExecutor-class
NlmeResidualEffect	NlmeResidualEffect-class
NlmeResidualEffect-class	NlmeResidualEffect-class
NlmeScenario	NlmeScenario-class
NlmeScenario-class	NlmeScenario-class
NlmeSimTableDef	NlmeSimTableDef-class
NlmeSimTableDef-class	NlmeSimTableDef-class
NlmeSimulationJob-class	SimpleNlmeJob-class
NlmeSimulationParams	NlmeSimulationParams-class
NlmeSimulationParams-class	NlmeSimulationParams-class
NlmeStrucParamStyle	NlmeStrucParamStyle
NlmeTableDef	NlmeTableDef-class
NlmeTableDef-class	NlmeTableDef-class
NlmeUserAuthentication	NlmeUserAuthentication-class
NlmeUserAuthentication-class	NlmeUserAuthentication-class
NlmeVpcParams	NlmeVpcParams-class
NlmeVpcParams-class	NlmeVpcParams-class
observationNames	observationNames
obtain_NLMELicense	obtain_NLMELicense
OneCpt_IVInfusionData	OneCpt_IVInfusionData
open_model_in_model_designer	open_model_in_model_designer
parsePMLColMap	parsePMLColMap
parse_NLMEHosts	parse_NLMEHosts
pkcovbqlData	pkcovbqlData
pkData	pkData
pkemaxmodel	pkemaxmodel
pkindirectmodel	pkindirectmodel
pkindirectmodel_MappingParameters	pkindirectmodel_MappingParameters
pklinearmodel	pklinearmodel
pkmodel	pkmodel
pkmodel_MappingParameters	pkmodel_MappingParameters
pkpdData	pkpdData
print.ExtraDoseDataType	print.ExtraDoseDataType
print.ExtraDoseItem	print.ExtraDoseItem
print.ExtraDoseOption	print.ExtraDoseOption
print.NlmeColumnMap	print.NlmeColumnMap
print.NlmeCovariateParameter	print.NlmeCovariateParameter
print.NlmeEngineExtraParams	print.NlmeEngineExtraParams
print.NlmeParallelHost	print.NlmeParallelHost
print.NlmePmlModel	print.NlmePmlModel
print.NlmeStructuralParameter	print.NlmeStructuralParameter
print.profileResult	print.profileResult
print.rsnlme_boot	print.rsnlme_boot
print.rsnlme_fit	print.rsnlme_fit
print.scmResult	print.scmResult
print.scmSearchResult	print.scmSearchResult
print.SecondaryParameter	print.SecondaryParameter
print.SimpleNlmeJob	print.SimpleNlmeJob
print.summary.scmResult	print.summary.scmResult
print.summary.scmSearchResult	print.summary.scmSearchResult
ProfileNlmeJob-class	SimpleNlmeJob-class
ProfileParameters	ProfileParameters-class
ProfileParameters-class	ProfileParameters-class
profilePertubate	profilePertubate
ProfileVar	ProfileVar-class
ProfileVar-class	ProfileVar-class
randomBlockStatement	randomBlockStatement
randomEffect	randomEffect
read_mmdl	read_mmdl
removeCovariate	removeCovariate
remove_NLMELicense	remove_NLMELicense
ResetColumnInfo	ResetColumnInfo-class
ResetColumnInfo-class	ResetColumnInfo-class
residualEffect<-	residualEffect-set
residualEffectNames	residualEffectNames
residualError	residualError
rsnlme_boot	rsnlme_boot
rsnlme_fit	rsnlme_fit
run_metamodel	run_metamodel
saveModel	saveModel
saveUpdatedMetamodel	saveUpdatedMetamodel
save_analysis_plan	save_analysis_plan
save_translation_report	save_translation_report
scaffold_mmdl_from_pml	scaffold_mmdl_from_pml
scmSearchTable	scmSearchTable
secondaryParameterNames	secondaryParameterNames
ShotgunNlmeJob-class	SimpleNlmeJob-class
shotgunSearch	shotgunSearch
simmodel	simmodel
SimpleNlmeJob	SimpleNlmeJob-class
SimpleNlmeJob-class	SimpleNlmeJob-class
SortByNlmeJob-class	SimpleNlmeJob-class
SortColumns	SortColumns-class
SortColumns-class	SortColumns-class
sortfit	sortfit
start_nlme_bootstrap	start_nlme_bootstrap
start_nlme_fit	start_nlme_fit
start_nlme_fitmodel	start_nlme_fitmodel
start_nlme_fit_spec	start_nlme_fit_spec
start_nlme_job	start_nlme_job
start_nlme_vpcmodel	start_nlme_vpcmodel
start_sequential_lrt	start_sequential_lrt
StepwiseNlmeJob-class	SimpleNlmeJob-class
StepwiseParams	StepwiseParams-class
StepwiseParams-class	StepwiseParams-class
stepwiseSearch	stepwiseSearch
stop_sequential_lrt	stop_sequential_lrt
structuralParameter	structuralParameter
structuralParameterNames	structuralParameterNames
summarize_vpc	summarize_vpc
summary.scmResult	summary.scmResult
summary.scmSearchResult	summary.scmSearchResult
tableParams	tableParams
textualmodel	textualmodel
update_model_omegas	update_model_omegas
update_model_sigmas	update_model_sigmas
update_model_thetas	update_model_thetas
update_Omegas	update_Omegas
update_Sigmas	update_Sigmas
update_Thetas	update_Thetas
validate_analysis_plan	validate_analysis_plan
validate_covariate_search	validate_covariate_search
validate_cov_character_labels_required	validate_cov_character_labels_required
validate_cov_data_coverage	validate_cov_data_coverage
validate_cov_labels	validate_cov_labels
validate_cov_levels	validate_cov_levels
validate_cov_numeric_labels_mutex	validate_cov_numeric_labels_mutex
validate_fit_spec	validate_fit_spec
validate_mmdl	validate_mmdl
validate_nlme_model	validate_nlme_model
validate_pml	validate_pml
validate_qc_readiness	validate_qc_readiness
validate_sequential_lrt	validate_sequential_lrt
vpcmodel	vpcmodel
wait_for_nlme_job	wait_for_nlme_job
wait_for_nlme_jobs	wait_for_nlme_jobs
writeDefaultFiles	writeDefaultFiles
write_mmdl	write_mmdl
[.scmSearchResult	sub-.scmSearchResult
