Package: BOLDconnectR
Title: Retrieve, Transform and Analyze the Barcode of Life Data Systems
        Data
Version: 1.0.1
Authors@R: c(
    person("Sameer", "Padhye", , "spadhye@uoguelph.ca", role = c("aut", "cre")),
    person("Liliana", "Ballesteros-Mejia", , "cballest@uoguelph.ca", role = "aut"),
    person("Timothy", "Agda", , "tagda@uoguelph.ca", role = "aut"),
    person("Jireh", "Agda", , "agdaj@uoguelph.ca", role = "aut"),
    person("Sujeevan", "Ratnasingham", , "sratnasi@uoguelph.ca", role = "aut")
  )
Maintainer: Sameer Padhye <spadhye@uoguelph.ca>
Description: Facilitates retrieval, transformation and analysis of the data
    from the Barcode of Life Data Systems (BOLD) database <https://boldsystems.org/>. 
    This package allows both public and private user data to be easily downloaded into the R
    environment using a variety of inputs such as: IDs (processid, sampleid), BINs, dataset codes, 
    project codes, taxonomy, geography etc. It provides frictionless data conversion  
    into formats compatible with other R-packages and third-party tools, 
    as well as functions for sequence alignment & clustering, biodiversity analysis and spatial mapping.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0.0)
biocViews:
Imports: ape (>= 5.5), BAT (>= 2.0), data.table (>= 1.13), dplyr (>=
        1.0.1), ggplot2 (>= 3.3.2), httr (>= 1.4.2), jsonlite (>= 1.7),
        maps (>= 3.3), methods, rlang, rnaturalearth, sf (>= 0.9.4),
        skimr (>= 2.1.2), tidyr (>= 1.1.1), utils, vegan (>= 2.5.7)
Suggests: Biostrings, BiocManager, DT, msa, muscle, knitr, rmarkdown
RoxygenNote: 7.3.3
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-07-23 17:40:25 UTC; sameerpadhye
Author: Sameer Padhye [aut, cre],
  Liliana Ballesteros-Mejia [aut],
  Timothy Agda [aut],
  Jireh Agda [aut],
  Sujeevan Ratnasingham [aut]
Repository: CRAN
Date/Publication: 2026-07-23 18:10:02 UTC
Built: R 4.5.3; ; 2026-07-28 18:26:46 UTC; windows
