# Estimate Permutation p-Values for Random Forest Importance Metrics

## Documentation for package ‘rfPermute’ version 2.5.5

- DESCRIPTION file
- Package README

## Help Pages

as.randomForest | Estimate Permutation p-values for Random Forest Importance Metrics
balancedSampsize | Balanced Sample Size
casePredictions | Case Predictions
classPriors | Class Priors
cleanRFdata | Clean Random Forest Input Data
combineRP | Combine rfPermute objects
confusionMatrix | Confusion Matrix
importance | Extract rfPermute Importance Scores and p-values.
importance.rfPermute | Extract rfPermute Importance Scores and p-values.
pctCorrect | Percent Correctly Classified
plotConfMat | Confusion Matrix
plotImportance | Extract rfPermute Importance Scores and p-values.
plotImpPreds | Plot Important Predictor Distribution
plotInbag | Plot Inbag distribution
plotNull | Plot Random Forest Importance Null Distributions
plotPredictedProbs | Plot Predicted Probabilities
plotProximity | Plot Random Forest Proximity Scores
plotTrace | Plot Trace
plotVotes | Plot Vote Distribution
predict.rfPermute | Estimate Permutation p-values for Random Forest Importance Metrics
print.rfPermute | Estimate Permutation p-values for Random Forest Importance Metrics
rfPermute | Estimate Permutation p-values for Random Forest Importance Metrics
rfPermute.default | Estimate Permutation p-values for Random Forest Importance Metrics
rfPermute.formula | Estimate Permutation p-values for Random Forest Importance Metrics
rfPermuteTutorial | Estimate Permutation p-values for Random Forest Importance Metrics
summary | Diagnostics of 'rfPermute' or 'randomForest' models.
summary.randomForest | Diagnostics of 'rfPermute' or 'randomForest' models.
summary.rfPermute | Diagnostics of 'rfPermute' or 'randomForest' models.
symb.metab | Symbiodinium type metabolite profiles