* using log directory 'd:/Rcompile/CRANpkg/local/4.7/brglm2.Rcheck'
* using R Under development (unstable) (2026-09-21 r90579 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-09-24 13:27:13 UTC
* checking for file 'brglm2/DESCRIPTION' ... OK
* this is package 'brglm2' version '1.1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'brglm2' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 14.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s] NOTE
Found calls to structure() using deprecated special names:
  brglm2/R/brglmFit.R (.Names: 1)
  brglm2/R/brnb.R (.Names: 1)
'.Names' should be changed to 'names'.
* checking Rd files ... [2s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [6s] ERROR
Running examples in 'brglm2-Ex.R' failed
The error most likely occurred in:

> ### Name: mdyplFit
> ### Title: Fitting function for 'glm()' for maximum Diaconis-Ylvisaker
> ###   prior penalized likelihood estimation of logistic regression models
> ### Aliases: mdyplFit mdypl_fit
> 
> ### ** Examples
> 
> 
> data("lizards", package = "brglm2")
> liz_fm <- cbind(grahami, opalinus) ~ height + diameter + light + time
> ## ML fit = MDYPL fit with `alpha = 1`
> liz_ml <- glm(liz_fm, family = binomial(), data = lizards,
+               method = "mdyplFit", alpha = 1)
Error in mdyplControl(epsilon = 1e-08, maxit = 25, trace = FALSE, tol = 1e-11,  : 
  unused arguments (tol = 1e-11, wtol = 0)
Calls: glm -> eval -> eval -> mdyplFit -> mdyplFit -> do.call
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [32s] OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [6s] OK
* DONE
Status: 1 ERROR, 1 NOTE