Calculate Tree Traits from Terrestrial Lidar
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Documentation for package ‘tReeTraits’ version 0.1.2
Help Pages
| .read_qsm_raw | Read a PyTLidar QSM file |
| add_verticality | Add point-wise verticality from local PCA |
| basics_diagnostic_plot | Diagnostic Plot of Basic Tree Measurements |
| branch_distribution_plot | Diagnostic Plot of Branch Diameter Distribution |
| branch_size_distribution | Get Branch size distribution from a QSM |
| branch_volume_weighted_stats | Calculate volume weighted branch statistics |
| clean_las | Load, Recenter, and Remove low vegetation from 'LAS' object representing segmented tree |
| convex_hull_2D | Returns the convex hull representing vertical crown area |
| fit_taper_Kozak | Fit taper equation to QSM |
| full_diagnostic_plot | Generate a diagnostic plot to assess basic metrics and QSM output |
| get_area_profile | Generate area estimates of tree profile in segments |
| get_center_of_mass | Get center of mass from tree bole segments QSM (X, Y, Z) |
| get_com_offset | Horizontal offset of center of mass from QSM |
| get_crown_base | Estimate Crown base height of 'LAS' representing segmented tree. |
| get_crown_lever_arm | Calculate crown leverage from point cloud |
| get_crown_volume_alpha | Estimate crown volume by alpha shape volume |
| get_crown_volume_voxel | Estimate crown volume by voxelization |
| get_dbh | Extract diameter at breast height from 'LAS' object representing segmented tree. |
| get_height | Extract height from 'LAS' object representing segmented tree. |
| get_lacunarity | Calculate crown lacunarity from a tree crown |
| get_primary_branches | Extract primary branches from a QSM |
| get_stem_sweep | Calculate tree sweep from straight line from QMS |
| get_stem_tilt | Get tree tilt from QSM |
| get_width | Extract width from 'LAS' object representing segmented tree. |
| hull_diagnostic_plot | Diagnostic Plot of Crown Convex Hulls |
| internode_distances | Get internode distances between primary branches from a QSM |
| load_qsm | Load and Validate a QSM File |
| normalize_las | Normalize 'LAS' object representing segmented tree. |
| plot_qsm2d | Plot QSM in base R |
| plot_qsm3d | Plot QSM Cylinders in 3D |
| plot_tree | Make 3-panel plot of tree point cloud to check for errors |
| qsm_volume_distribution | Volume distribution from QSM |
| recenter_las | Recenter 'LAS' object representing segmented tree based on the bole location |
| rotate_las_z | Rotate 'LAS' object about the 'Z' axis |
| run_treeqsm | Run TreeQSM on a LAS/LAZ file using PyTLidar |
| segment_crown | Segment tree crown of 'LAS' representing segmented tree. |
| setup_pytlidar | Setup PyTLidar Python environment |
| taper_diagnostic_plot | Diagnostic Plot of Tree Taper |
| voxel_hull_2D | Returns an 'sf'representing the vertical crown area from voxelization |
| write_qsm | Save QSM results and patch parameters |