Streamlining Functional Biogeography Analyses

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Documentation for package ‘funbiogeo’ version 0.0.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

fb_aggregate_site_data	Aggregate Site Data Along Coarser Spatial Grid
fb_count_sites_by_species	Count Number of Sites Occupied by Species
fb_count_species_by_site	Count Number of Species per Site
fb_count_species_by_trait	Count Number of Species for Each Trait
fb_count_traits_by_species	Compute Number of Known Trait(s) per Species
fb_cwm	Compute community-weighted means (CWM) of trait values
fb_filter_sites_by_species_coverage	Filter sites with a given species coverage threshold
fb_filter_sites_by_trait_coverage	Filter sites with a given trait coverage threshold
fb_filter_species_by_site_coverage	Filter species with a given sites coverage threshold
fb_filter_species_by_trait_coverage	Filter species with a given traits coverage threshold
fb_filter_traits_by_species_coverage	Filter traits with a given species coverage threshold
fb_format_site_locations	Extract site x locations information from long format data
fb_format_site_species	Extract site x species information from long format data
fb_format_species_categories	Extract species x categories information from long format data
fb_format_species_traits	Extract species x traits information from long format data
fb_get_all_trait_coverages_by_site	Compute Trait Coverage per Site for Each Trait
fb_get_environment	Extract Raster Values at Location of Sites
fb_get_trait_combination_coverage	Compute site trait coverage for each trait combination
fb_get_trait_coverage_by_site	Compute Trait Coverage For Each Site Weighted by Abundance
fb_make_report	Create an Rmarkdown Report to Explore User Data
fb_map_raster	Map a Single Raster Layer
fb_map_site_data	Map Arbitrary Site Data
fb_map_site_traits_completeness	Map Trait Coverage Per Site
fb_plot_distribution_site_trait_coverage	Plot Distribution of Trait Coverages across all Sites
fb_plot_number_sites_by_species	Plot Number of Sites by Species
fb_plot_number_species_by_trait	Plot Number of Species per Trait
fb_plot_number_traits_by_species	Plot Number of Traits per Species
fb_plot_site_environment	Plot Position of Sites in Environmental Space
fb_plot_site_traits_completeness	Plot Trait Coverage per Site for each Trait
fb_plot_species_traits_completeness	Plot Trait Coverage per Species for each Trait
fb_plot_species_traits_missingness	Plot Trait Coverage per Species for each Trait
fb_plot_trait_combination_frequencies	Plot Present and Missing Trait Combinations Frequencies
fb_plot_trait_correlation	Plot Trait Correlation Matrix
fb_table_trait_summary	Summary Table on Traits (Missingness, Range, etc.)
woodiv_categories	Species x Categories of some Mediterranean Conifers
woodiv_locations	Sites x Locations of some Mediterranean Conifers
woodiv_site_species	Sites x Species of some Mediterranean Conifers
woodiv_traits	Species x Traits of some Mediterranean Conifers