Regional Association Score for Genome-Wide Association Studies
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Documentation for package ‘RAS’ version 1.1.2
Help Pages
| RAS-package | RAS: Regional Association Score for Genome-Wide Association Studies |
| bed_to_rasbin | Convert a PLINK 1 .bed/.bim/.fam Fileset to .rasbin |
| compute_gwas_weights | Per-SNP GWAS Effect Size Weights |
| compute_gwas_weights_fast | Aliases Kept from the Development Versions |
| compute_gwas_weights_original | Per-SNP GWAS Effect Size Weights (Pure-R, In-Memory) |
| compute_pgs_matrix | Build the Per-Individual PGS Contribution Matrix |
| geno_to_rasbin | Write a Genotype Matrix to the Chunked .rasbin Format |
| get_break_points | Detect a Single Changepoint via Segmented Regression |
| get_local_maximum | Find the Local Maximum Within a Window |
| plot.ras | Plot a RAS Result Object |
| print.ras | Print a RAS Result Object |
| RAS | RAS: Regional Association Score for Genome-Wide Association Studies |
| ras | RAS: Regional Association Score Analysis |
| ras-aliases | Aliases Kept from the Development Versions |
| rasbin_header | Read the .rasbin File Header |
| rasbin_read_chunk | Read a Column Range from a .rasbin File |
| ras_box_calibrate | Calibrate the Box-Scan Threshold on Null Profiles |
| ras_box_detect | Detect Elevated Regions with the Box Scan |
| ras_box_stat | Box-Scan Statistic for Every Window Start and Width |
| ras_detect | First-Pass Changepoint Detection via Sliding Window |
| ras_detect_fast | Aliases Kept from the Development Versions |
| ras_detect_original | First-Pass Changepoint Detection (Pure-R) |
| ras_fast | Aliases Kept from the Development Versions |
| ras_harmonize_sumstats | Harmonise External GWAS Summary Statistics into RAS Weights |
| ras_liftover_sumstats | LiftOver External Summary Statistics onto the Map's Build (Route B2) |
| ras_map_ids_to_rsid | Rename a Local Genotype Map's Variants to rsIDs (Harmonisation Route B0) |
| ras_memory | Estimate Memory Requirements and Check System Readiness |
| ras_original | RAS Pipeline (Pure-R, In-Memory) |
| ras_read_variant_dictionary | Read a Variant Dictionary for Summary-Statistics Harmonisation |
| ras_scan | RAS Stage 1: Averaged Regional Association Profile |
| ras_scan_external | RAS Scan with External Weights on All Samples |
| ras_scan_external_fast | Aliases Kept from the Development Versions |
| ras_scan_external_original | Summary-Informed RAS Scan on All Samples (In-Memory) |
| ras_scan_fast | Aliases Kept from the Development Versions |
| ras_scan_original | RAS Stage 1 Scan (Pure-R, In-Memory) |
| ras_sumstats_report | Inspect an External-Summary Alignment Without Committing to It |
| ras_validate | Second-Pass Changepoint Validation |
| ras_weights_from_sumstats | Align External GWAS Summary Statistics to a Local Genotype Map |
| release_memory | Release Memory Back to the OS |
| screen_forward_max_region | Forward Scan of the RAS Profile |
| screen_forward_max_region_fast | Aliases Kept from the Development Versions |
| screen_forward_max_region_original | Forward Scan of the RAS Profile (Pure-R, In-Memory) |
| slope_test | One-Tailed Slope Test Through the Origin |