natcpp 0.3.0

• add weighted Jaccard similarity functions for sparse data
  • c_weighted_jaccard_sparse() returns a sparse similarity (or distance) matrix
  • c_weighted_jaccard_dense() returns a dense matrix or a dist-layout vector
  • both run in parallel via RcppThread, with an optional progress bar (RcppProgress)
  • triangle= switches between symmetric upper-triangle output and a full matrix
  • distance= returns 1 - similarity
• portable src/Makevars using $(SHLIB_OPENMP_CXXFLAGS) in place of a GNU make $(shell ...) callout to RcppThread::LdFlags()

Full Changelog: https://github.com/natverse/natcpp/compare/v0.2…v0.3.0

natcpp 0.2

• add fast coordinate / index conversion functions in https://github.com/natverse/natcpp/pull/2
  • c_coords21dindex()
  • c_ijkpos()
  • c_sub2ind() to make nat::coord2ind() and friends much more memory efficient

Full Changelog: https://github.com/natverse/natcpp/compare/v0.1.1…v0.2

natcpp 0.1.1

• adds c_ListofMatrixRows()

natcpp 0.1.0

• First version of the package with basic functions for manipulating segment lists and calculating cable lengths.