landsepi 1.5.0 (2024-09-02)

• Redisigned shiny app: simplified parameterization, include global/local inoculum, include more outputs (graphics & tables)
• Updated webpage

landsepi 1.4.0 (2024-03-12)

• [breaking change] Changed parameterization of inoculum to allow specific spatial location and genetic composition of inoculum (thanks to Manon)
• Changed parameterization of pathogen survival probability to allow different probabilities for different croptypes and years
• Added 2 parameters (adaptation_cost and relative_advantage) to allow two types of fitness costs paid by pathogens adapted to resistance (on all hosts, or only for unnecessary virulence)
• Help parameterization of treatments with loadTreatment()
• Updated documentation and vignettes

landsepi 1.3.0 (2023-07-19)

• [breaking change] Added parameterization of grapevine mildew (thanks to Marta)
• [breaking change] Added parameterization of black sigatoka of banana
• [breaking change] Added contact chemical treatments
• Changed the dynamics of host growth
• Added the output contribution
• Updated documentation and vignettes

landsepi 1.2.2 (2022-10-06)

• [breaking change] Added sexual reproduction with gene recombination (thanks to Marta)
• [breaking change] loadDispersalPathogen() now return a list of two matrix, the first for clonal and the second for sexual reproductions
• Changed the mutation process
• Updated Shiny app
• Added a NEWS.md file to track changes to the package
• Updated documentation and vignettes

landsepi 1.1.0 (2021-07-26)

• Updated Shiny app
• Updated documentation & vignettes
• Added economic parameters and outputs

landsepi 1.0.1 (2020-07-02)

• [breaking change] Added simulation of real landscapes using shapefiles
• [breaking change] Created a Shiny app (thanks to Jean-Loup)
• Created vignettes (tutorials)
• Added multiple epidemiological and evolutionary outputs
• Added Adult Plant Resistance (APR) genes

landsepi 0.0.2 (2018-03-26)

• Creation of the package
• Parameterization for rusts of cereal crops