Last updated on 2024-06-21 15:53:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.4 | 38.35 | 669.22 | 707.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.9.4 | 26.83 | 355.38 | 382.21 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.9.5 | 596.61 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.5 | 877.22 | OK | |||
| r-devel-windows-x86_64 | 0.9.4 | 31.00 | 475.00 | 506.00 | NOTE | |
| r-patched-linux-x86_64 | 0.9.4 | 47.82 | 624.23 | 672.05 | OK | |
| r-release-linux-x86_64 | 0.9.4 | 35.37 | 616.20 | 651.57 | OK | |
| r-release-macos-arm64 | 0.9.4 | 166.00 | NOTE | |||
| r-release-macos-x86_64 | 0.9.5 | 364.00 | NOTE | |||
| r-release-windows-x86_64 | 0.9.4 | 31.00 | 492.00 | 523.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.9.4 | 199.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.9.5 | 12.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 0.9.4 | 40.00 | 642.00 | 682.00 | NOTE |
Version: 0.9.4
Check: examples
Result: ERROR
Running examples in ‘tern-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: abnormal
> ### Title: Patient counts with abnormal range values
> ### Aliases: abnormal count_abnormal s_count_abnormal a_count_abnormal
> ### Keywords: internal
>
> ### ** Examples
>
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
>
> df <- data.frame(
+ USUBJID = as.character(c(1, 1, 2, 2)),
+ ANRIND = factor(c("NORMAL", "LOW", "HIGH", "HIGH")),
+ BNRIND = factor(c("NORMAL", "NORMAL", "HIGH", "HIGH")),
+ ONTRTFL = c("", "Y", "", "Y"),
+ stringsAsFactors = FALSE
+ )
>
> # Select only post-baseline records.
> df <- df %>%
+ filter(ONTRTFL == "Y")
>
> # Layout creating function.
> basic_table() %>%
+ count_abnormal(var = "ANRIND", abnormal = list(high = "HIGH", low = "LOW")) %>%
+ build_table(df)
Error in nlines(strsplit(s, "\n", fixed = TRUE), max_width = w) :
argument "fontspec" is missing, with no default
Calls: %>% ... FUN -> FUN -> vapply -> FUN -> wrap_txt -> open_font_dev
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [161s/272s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> pkg_name <- "tern"
> library(testthat)
> test_check(pkg_name, reporter = ParallelProgressReporter$new())
Loading required package: tern
Loading required package: rtables
Loading required package: formatters
Attaching package: 'formatters'
The following object is masked from 'package:base':
%||%
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
Attaching package: 'rtables'
The following object is masked from 'package:utils':
str
Registered S3 method overwritten by 'tern':
method from
tidy.glm broom
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
✔ | F W S OK | Context
⠋ [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] Starting up...
✖ | 3 4 4 | abnormal [2.4s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-abnormal.R:98:3'): count_abnormal works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-abnormal.R:98:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-abnormal.R:122:3'): count_abnormal works with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df2) at test-abnormal.R:122:3
2. └─rtables::build_table(., df2)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-abnormal.R:154:3'): count_abnormal works with default arguments and visit
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-abnormal.R:154:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 2 3 6 | abnormal_by_baseline
────────────────────────────────────────────────────────────────────────────────
Error ('test-abnormal_by_baseline.R:89:3'): count_abnormal_by_baseline works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-abnormal_by_baseline.R:89:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-abnormal_by_baseline.R:103:3'): count_abnormal_by_baseline works with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df2) at test-abnormal_by_baseline.R:103:3
2. └─rtables::build_table(., df2)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 1 2 3 | abnormal_by_marked [11.8s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-abnormal_by_marked.R:242:3'): count_abnormal_by_marked works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adlb_f) at test-abnormal_by_marked.R:242:3
2. └─rtables::build_table(., df = adlb_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 1 1 2 | abnormal_by_worst_grade
────────────────────────────────────────────────────────────────────────────────
Error ('test-abnormal_by_worst_grade.R:60:3'): count_abnormal_by_worst_grade works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adlb_f) at test-abnormal_by_worst_grade.R:60:3
2. └─rtables::build_table(., df = adlb_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::pagdfrow(...)
23. │ └─base::data.frame(...)
24. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables (local) .local(x, colwidths, max_width)
27. ├─base::unlist(...)
28. └─base::mapply(...)
29. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
30. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. ├─base::unlist(...)
33. └─base::vapply(...)
34. ├─formatters (local) FUN(X[[i]], ...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─base::vapply(...)
37. └─formatters (local) FUN(X[[i]], ...)
38. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
39. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 1 7 11 | abnormal_by_worst_grade_worsen [1.9s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-abnormal_by_worst_grade_worsen.R:195:3'): count_abnormal_lab_worsen_by_baseline
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = tern_ex_adsl) at test-abnormal_by_worst_grade_worsen.R:195:3
2. └─rtables::build_table(., df = df, alt_counts_df = tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::pagdfrow(...)
23. │ └─base::data.frame(...)
24. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables (local) .local(x, colwidths, max_width)
27. ├─base::unlist(...)
28. └─base::mapply(...)
29. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
30. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. ├─base::unlist(...)
33. └─base::vapply(...)
34. ├─formatters (local) FUN(X[[i]], ...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─base::vapply(...)
37. └─formatters (local) FUN(X[[i]], ...)
38. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
39. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 14 19 30 | analyze_variables [4.1s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-analyze_variables.R:292:3'): `analyze_vars` works with healthy input, default `na.rm = TRUE`.
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta_test) at test-analyze_variables.R:292:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:307:3'): `analyze_vars` works with healthy input, and control function.
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta_test) at test-analyze_variables.R:307:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:318:3'): `analyze_vars` works with healthy input, alternative `na.rm = FALSE`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta_test) at test-analyze_variables.R:318:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:327:3'): `analyze_vars` works with healthy factor input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% analyze_vars(vars = "foo") %>% ... at test-analyze_variables.R:327:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:338:3'): `analyze_vars` works with healthy factor input, alternative `na.rm = FALSE`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dta) at test-analyze_variables.R:338:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:362:3'): `analyze_vars` works with factors and different denominators
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─start %>% analyze_vars("RACE", denom = "n") %>% ... at test-analyze_variables.R:362:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:382:3'): analyze_vars works in demographic table example
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-analyze_variables.R:382:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:400:3'): `analyze_vars` works with character input and gives the same result as with factor
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_warning(result <- build_table(l, dta)) at test-analyze_variables.R:400:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─rtables::build_table(l, dta)
8. └─rtables::update_ref_indexing(tab)
9. ├─formatters::make_row_df(tt)
10. └─rtables::make_row_df(tt)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:424:3'): `analyze_vars` does not work with sparse character input due to missing statistics
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(build_table(l, dta_factor)) at test-analyze_variables.R:424:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rtables::build_table(l, dta_factor)
10. └─rtables::update_ref_indexing(tab)
11. ├─formatters::make_row_df(tt)
12. └─rtables::make_row_df(tt)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::pagdfrow(...)
18. │ └─base::data.frame(...)
19. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables (local) .local(x, colwidths, max_width)
22. ├─base::unlist(...)
23. └─base::mapply(...)
24. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
25. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. ├─base::unlist(...)
28. └─base::vapply(...)
29. ├─formatters (local) FUN(X[[i]], ...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─base::vapply(...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
34. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:432:3'): `analyze_vars` works with logical input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% analyze_vars(vars = "boo") %>% ... at test-analyze_variables.R:432:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:443:3'): `analyze_vars` works with healthy logical input, alternative `na.rm = FALSE`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dta) at test-analyze_variables.R:443:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:468:3'): `analyze_vars` works with empty named numeric variables
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dta) at test-analyze_variables.R:468:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:485:3'): analyze_vars 'na_str' argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dta) at test-analyze_variables.R:485:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:512:3'): analyze_vars works correctly with auto formats
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dt) at test-analyze_variables.R:512:3
2. └─rtables::build_table(., dt)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 7 2 | analyze_vars_in_cols [5.9s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-analyze_vars_in_cols.R:8:3'): analyze_vars_in_cols works correctly
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt = lyt, df = adpp) at test-analyze_vars_in_cols.R:8:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::make_row_df(...)
19. └─rtables::make_row_df(...)
20. └─rtables (local) .local(...)
21. ├─formatters::pagdfrow(...)
22. │ └─base::data.frame(...)
23. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables (local) .local(x, colwidths, max_width)
26. ├─base::unlist(...)
27. └─base::mapply(...)
28. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
29. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. ├─base::unlist(...)
32. └─base::vapply(...)
33. ├─formatters (local) FUN(X[[i]], ...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─base::vapply(...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
38. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:50:3'): custom labels can be set with row_labels for analyze_colvars
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = adpp) at test-analyze_vars_in_cols.R:50:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:102:3'): custom labels can be set with row_labels and summarize
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = adpp) at test-analyze_vars_in_cols.R:102:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:171:3'): summarize works with nested analyze
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(build_table(lyt, df = tern_ex_adpp, alt_counts_df = tern_ex_adsl)) at test-analyze_vars_in_cols.R:171:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rtables::build_table(lyt, df = tern_ex_adpp, alt_counts_df = tern_ex_adsl)
10. └─rtables::update_ref_indexing(tab)
11. ├─formatters::make_row_df(tt)
12. └─rtables::make_row_df(tt)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::make_row_df(...)
21. └─rtables::make_row_df(...)
22. └─rtables (local) .local(...)
23. ├─formatters::pagdfrow(...)
24. │ └─base::data.frame(...)
25. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables (local) .local(x, colwidths, max_width)
28. ├─base::unlist(...)
29. └─base::mapply(...)
30. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
31. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. ├─base::unlist(...)
34. └─base::vapply(...)
35. ├─formatters (local) FUN(X[[i]], ...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─base::vapply(...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
40. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:251:3'): analyze_vars_in_cols works well with categorical data
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─testthat::expect_snapshot(...) at test-analyze_vars_in_cols.R:251:3
2. └─rlang::cnd_signal(state$error)
Error ('test-analyze_vars_in_cols.R:316:3'): analyze_vars_in_cols works with imputation rule
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt = lyt, df = df) at test-analyze_vars_in_cols.R:316:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::make_row_df(...)
19. └─rtables::make_row_df(...)
20. └─rtables (local) .local(...)
21. ├─formatters::make_row_df(...)
22. └─rtables::make_row_df(...)
23. └─rtables (local) .local(...)
24. ├─formatters::make_row_df(...)
25. └─rtables::make_row_df(...)
26. └─rtables (local) .local(...)
27. ├─formatters::pagdfrow(...)
28. │ └─base::data.frame(...)
29. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
30. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
31. └─rtables (local) .local(x, colwidths, max_width)
32. ├─base::unlist(...)
33. └─base::mapply(...)
34. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
35. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
36. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
37. ├─base::unlist(...)
38. └─base::vapply(...)
39. ├─formatters (local) FUN(X[[i]], ...)
40. └─formatters (local) FUN(X[[i]], ...)
41. └─base::vapply(...)
42. └─formatters (local) FUN(X[[i]], ...)
43. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
44. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:419:3'): analyze_vars_in_cols works with caching
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt = lyt, df = df) at test-analyze_vars_in_cols.R:419:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::make_row_df(...)
19. └─rtables::make_row_df(...)
20. └─rtables (local) .local(...)
21. ├─formatters::make_row_df(...)
22. └─rtables::make_row_df(...)
23. └─rtables (local) .local(...)
24. ├─formatters::make_row_df(...)
25. └─rtables::make_row_df(...)
26. └─rtables (local) .local(...)
27. ├─formatters::pagdfrow(...)
28. │ └─base::data.frame(...)
29. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
30. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
31. └─rtables (local) .local(x, colwidths, max_width)
32. ├─base::unlist(...)
33. └─base::mapply(...)
34. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
35. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
36. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
37. ├─base::unlist(...)
38. └─base::vapply(...)
39. ├─formatters (local) FUN(X[[i]], ...)
40. └─formatters (local) FUN(X[[i]], ...)
41. └─base::vapply(...)
42. └─formatters (local) FUN(X[[i]], ...)
43. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
44. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✔ | 2 6 | bland-altman
✔ | 16 | combination_function
✖ | 3 6 14 | compare_variables
────────────────────────────────────────────────────────────────────────────────
Error ('test-compare_variables.R:97:3'): compare_vars works with default settings in rtables layout pipeline
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, tern_ex_adsl) at test-compare_variables.R:97:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-compare_variables.R:112:3'): compare_vars works with custom settings
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = tern_ex_adsl) at test-compare_variables.R:112:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-compare_variables.R:119:3'): compare_vars 'na_str' argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adsl) at test-compare_variables.R:119:3
2. └─rtables::build_table(., tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✔ | 1 3 | control_logistic
✔ | 1 4 | control_step
✔ | 3 11 | control_survival
✖ | 2 4 4 | count_cumulative
────────────────────────────────────────────────────────────────────────────────
Error ('test-count_cumulative.R:72:3'): count_cumulative works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_cumulative.R:72:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_cumulative.R:91:3'): count_cumulative works with customized arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_cumulative.R:91:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 1 4 4 | count_missed_doses
────────────────────────────────────────────────────────────────────────────────
Error ('test-count_missed_doses.R:45:3'): count_missed_doses works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_missed_doses.R:45:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 5 3 10 | count_occurrences [1.7s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-count_occurrences.R:131:3'): count_occurrences functions as expected with valid input and default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─lyt %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences.R:131:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences.R:157:3'): count_occurrences functions as expected with label row specified
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─lyt %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences.R:157:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences.R:166:3'): count_occurrences works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adae) at test-count_occurrences.R:166:3
2. └─rtables::build_table(., tern_ex_adae)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences.R:226:3'): summarize_occurrences functions as expected with valid input and default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─lyt %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences.R:226:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences.R:235:3'): summarize_occurrences works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adae) at test-count_occurrences.R:235:3
2. └─rtables::build_table(., tern_ex_adae)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 8 6 6 | count_occurrences_by_grade [2.2s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-count_occurrences_by_grade.R:142:3'): count_occurrences_by_grade works with default arguments for intensity
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:142:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:166:3'): count_occurrences_by_grade label works when more than one variables are analyzed
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:166:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:189:3'): count_occurrences_by_grade works with custom arguments for grade
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:189:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:225:3'): summarize_occurrences_by_grade works with default arguments for intensity
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:225:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:272:3'): summarize_occurrences_by_grade works with custom arguments for grade
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:272:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:303:3'): count_occurrences_by_grade works with trim_levels_in_group split function
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:303:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:340:3'): summarize_ and count_occurrences_by_grade works with pagination and sorting
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% ... at test-count_occurrences_by_grade.R:340:3
2. ├─rtables::sort_at_path(...)
3. │ └─base::NROW(tt)
4. ├─rtables::sort_at_path(...)
5. │ └─base::NROW(tt)
6. ├─rtables::sort_at_path(...)
7. │ └─base::NROW(tt)
8. └─rtables::build_table(., df, alt_counts_df = df_adsl)
9. └─rtables::update_ref_indexing(tab)
10. ├─formatters::make_row_df(tt)
11. └─rtables::make_row_df(tt)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:388:3'): count_occurrences_by_grade works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adae) at test-count_occurrences_by_grade.R:388:3
2. └─rtables::build_table(., tern_ex_adae)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 2 2 2 | count_patients_events_in_cols
────────────────────────────────────────────────────────────────────────────────
Error ('test-count_patients_events_in_cols.R:44:3'): summarize_patients_events_in_cols works well with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_patients_events_in_cols.R:44:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_events_in_cols.R:60:3'): summarize_patients_events_in_cols works well with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_patients_events_in_cols.R:60:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 3 3 3 | count_patients_with_event
────────────────────────────────────────────────────────────────────────────────
Error ('test-count_patients_with_event.R:60:3'): count_patients_with_event works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, test_data, alt_counts_df = test_adsl_like) at test-count_patients_with_event.R:60:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_event.R:98:3'): count_patients_with_event works as expected for different column count
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = test_data, alt_counts_df = test_adsl_like) at test-count_patients_with_event.R:98:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_event.R:126:3'): count_patients_with_flags works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% ... at test-count_patients_with_event.R:126:3
2. └─rtables::build_table(., tern_ex_adae, alt_counts_df = tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 5 3 3 | count_patients_with_flags [1.1s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-count_patients_with_flags.R:127:3'): count_patients_with_flags works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = test_data, alt_counts_df = test_adsl_like) at test-count_patients_with_flags.R:127:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_flags.R:175:3'): count_patients_with_flags works as expected when specifying table_names
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = test_data, alt_counts_df = test_adsl_like) at test-count_patients_with_flags.R:175:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_flags.R:214:3'): count_patients_with_flags works with label row specified
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = adae_local, alt_counts_df = tern_ex_adsl) at test-count_patients_with_flags.R:214:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_flags.R:240:3'): count_patients_with_flags custom variable label behaviour works with var_labels specified
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = adae_local, alt_counts_df = tern_ex_adsl) at test-count_patients_with_flags.R:240:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_flags.R:310:3'): count_patients_with_flags works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(adae, alt_counts_df = tern_ex_adsl) at test-count_patients_with_flags.R:310:3
2. └─rtables::build_table(., adae, alt_counts_df = tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 3 7 7 | count_values
────────────────────────────────────────────────────────────────────────────────
Error ('test-count_values.R:59:3'): count_values works as expected with a single value
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(iris) at test-count_values.R:59:3
2. └─rtables::build_table(., iris)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_values.R:73:3'): count_values works as expected with multiple values and variables
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_values.R:73:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-count_values.R:110:3'): count_values works as expected with multiple values and variables
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% count_values("x", values = TRUE) %>% ... at test-count_values.R:110:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✔ | 5 11 | coxph
✔ | 24 50 | coxreg [1.7s]
✔ | 2 6 | decorate_grob [2.3s]
✔ | 5 5 | desctools_binom_diff
✔ | 5 12 | df_explicit_na
✖ | 1 7 11 | estimate_incidence_rate
────────────────────────────────────────────────────────────────────────────────
Error ('test-estimate_incidence_rate.R:94:3'): estimate_incidence_rate works as expected with healthy input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-estimate_incidence_rate.R:94:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 1 2 6 | estimate_multinom_rsp
────────────────────────────────────────────────────────────────────────────────
Error ('test-estimate_multinom_rsp.R:45:3'): estimate_multinomial_response returns right result
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt = lyt, df = dta_test) at test-estimate_multinom_rsp.R:45:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 3 14 14 | estimate_proportion [1.4s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-estimate_proportion.R:267:3'): `estimate_proportion` is compatible with `rtables`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(anl) at test-estimate_proportion.R:267:3
2. └─rtables::build_table(., anl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-estimate_proportion.R:291:3'): `estimate_proportion` and strat_wilson is compatible with `rtables`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-estimate_proportion.R:291:3
2. │ └─base::withCallingHandlers(...)
3. ├─... %>% build_table(anl)
4. └─rtables::build_table(., anl)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-estimate_proportion.R:322:5'): `estimate_proportion` and strat_wilson with equal weights and specific number of interactions works with `rtables`
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'obj' in selecting a method for function 'get_formatted_cells': argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% get_formatted_cells() at test-estimate_proportion.R:322:5
2. ├─rtables::get_formatted_cells(.)
3. ├─rtables::build_table(., anl)
4. │ └─rtables::update_ref_indexing(tab)
5. │ ├─formatters::make_row_df(tt)
6. │ └─rtables::make_row_df(tt)
7. │ └─rtables (local) .local(...)
8. │ ├─formatters::make_row_df(...)
9. │ └─rtables::make_row_df(...)
10. │ └─rtables (local) .local(...)
11. │ ├─formatters::pagdfrow(...)
12. │ │ └─base::data.frame(...)
13. │ ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
14. │ └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
15. │ └─rtables (local) .local(x, colwidths, max_width)
16. │ ├─base::unlist(...)
17. │ └─base::mapply(...)
18. │ └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
19. │ ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. │ └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. │ ├─base::unlist(...)
22. │ └─base::vapply(...)
23. │ ├─formatters (local) FUN(X[[i]], ...)
24. │ └─formatters (local) FUN(X[[i]], ...)
25. │ └─base::vapply(...)
26. │ └─formatters (local) FUN(X[[i]], ...)
27. │ └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
28. │ └─formatters::open_font_dev(fontspec)
29. └─base::.handleSimpleError(...)
30. └─base (local) h(simpleError(msg, call))
────────────────────────────────────────────────────────────────────────────────
✔ | 3 13 | fit_rsp_step [1.7s]
✔ | 3 9 | fit_survival_step [1.3s]
✖ | 1 20 32 | formatting_functions [1.3s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-formatting_functions.R:242:3'): auto formatting works with NA values
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-formatting_functions.R:242:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─... %>% build_table(dt)
10. └─rtables::build_table(., dt)
11. └─rtables::update_ref_indexing(tab)
12. ├─formatters::make_row_df(tt)
13. └─rtables::make_row_df(tt)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::pagdfrow(...)
19. │ └─base::data.frame(...)
20. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables (local) .local(x, colwidths, max_width)
23. ├─base::unlist(...)
24. └─base::mapply(...)
25. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
26. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. ├─base::unlist(...)
29. └─base::vapply(...)
30. ├─formatters (local) FUN(X[[i]], ...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─base::vapply(...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
35. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 6 0 | g_forest [2.0s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-g_forest.R:18:3'): g_forest default plot works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% tabulate_rsp_subgroups(df) at test-g_forest.R:18:3
2. └─tern::tabulate_rsp_subgroups(., df)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:48:3'): g_forest works with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-g_forest.R:48:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─tern::g_forest(...)
10. ├─formatters::matrix_form(tbl)
11. └─rtables::matrix_form(tbl)
12. └─rtables (local) .local(obj, indent_rownames, expand_newlines, indent_size)
13. ├─formatters::make_row_df(obj)
14. └─rtables::make_row_df(obj)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:91:3'): g_forest as_list argument works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% tabulate_rsp_subgroups(df) at test-g_forest.R:91:3
2. └─tern::tabulate_rsp_subgroups(., df)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:103:3'): g_forest argument deprecation warnings work
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% tabulate_rsp_subgroups(df) at test-g_forest.R:103:3
2. └─tern::tabulate_rsp_subgroups(., df)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:144:3'): forest_grob works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─lifecycle::expect_deprecated(...) at test-g_forest.R:144:3
2. │ └─testthat::expect_warning(...)
3. │ └─testthat:::expect_condition_matching(...)
4. │ └─testthat:::quasi_capture(...)
5. │ ├─testthat (local) .capture(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
8. ├─lifecycle::expect_deprecated(...)
9. │ └─testthat::expect_warning(...)
10. │ └─testthat:::expect_condition_matching(...)
11. │ └─testthat:::quasi_capture(...)
12. │ ├─testthat (local) .capture(...)
13. │ │ └─base::withCallingHandlers(...)
14. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
15. ├─lifecycle::expect_deprecated(...)
16. │ └─testthat::expect_warning(...)
17. │ └─testthat:::expect_condition_matching(...)
18. │ └─testthat:::quasi_capture(...)
19. │ ├─testthat (local) .capture(...)
20. │ │ └─base::withCallingHandlers(...)
21. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
22. ├─lifecycle::expect_deprecated(...)
23. │ └─testthat::expect_warning(...)
24. │ └─testthat:::expect_condition_matching(...)
25. │ └─testthat:::quasi_capture(...)
26. │ ├─testthat (local) .capture(...)
27. │ │ └─base::withCallingHandlers(...)
28. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
29. ├─lifecycle::expect_deprecated(...)
30. │ └─testthat::expect_warning(...)
31. │ └─testthat:::expect_condition_matching(...)
32. │ └─testthat:::quasi_capture(...)
33. │ ├─testthat (local) .capture(...)
34. │ │ └─base::withCallingHandlers(...)
35. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
36. ├─lifecycle::expect_deprecated(...)
37. │ └─testthat::expect_warning(...)
38. │ └─testthat:::expect_condition_matching(...)
39. │ └─testthat:::quasi_capture(...)
40. │ ├─testthat (local) .capture(...)
41. │ │ └─base::withCallingHandlers(...)
42. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
43. ├─lifecycle::expect_deprecated(...)
44. │ └─testthat::expect_warning(...)
45. │ └─testthat:::expect_condition_matching(...)
46. │ └─testthat:::quasi_capture(...)
47. │ ├─testthat (local) .capture(...)
48. │ │ └─base::withCallingHandlers(...)
49. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
50. └─tern:::forest_grob(...)
51. ├─formatters::matrix_form(tbl)
52. └─rtables::matrix_form(tbl)
53. └─rtables (local) .local(obj, indent_rownames, expand_newlines, indent_size)
54. ├─formatters::make_row_df(obj)
55. └─rtables::make_row_df(obj)
56. └─rtables (local) .local(...)
57. ├─formatters::make_row_df(...)
58. └─rtables::make_row_df(...)
59. └─rtables (local) .local(...)
60. ├─formatters::pagdfrow(...)
61. │ └─base::data.frame(...)
62. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
63. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
64. └─rtables (local) .local(x, colwidths, max_width)
65. ├─base::unlist(...)
66. └─base::mapply(...)
67. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
68. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
69. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
70. ├─base::unlist(...)
71. └─base::vapply(...)
72. ├─formatters (local) FUN(X[[i]], ...)
73. └─formatters (local) FUN(X[[i]], ...)
74. └─base::vapply(...)
75. └─formatters (local) FUN(X[[i]], ...)
76. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
77. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:176:3'): forest_viewport works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─lifecycle::expect_deprecated(lifecycle::expect_deprecated(lifecycle::expect_deprecated(v <- forest_viewport(tbl)))) at test-g_forest.R:176:3
2. │ └─testthat::expect_warning(...)
3. │ └─testthat:::expect_condition_matching(...)
4. │ └─testthat:::quasi_capture(...)
5. │ ├─testthat (local) .capture(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
8. ├─lifecycle::expect_deprecated(lifecycle::expect_deprecated(v <- forest_viewport(tbl)))
9. │ └─testthat::expect_warning(...)
10. │ └─testthat:::expect_condition_matching(...)
11. │ └─testthat:::quasi_capture(...)
12. │ ├─testthat (local) .capture(...)
13. │ │ └─base::withCallingHandlers(...)
14. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
15. ├─lifecycle::expect_deprecated(v <- forest_viewport(tbl))
16. │ └─testthat::expect_warning(...)
17. │ └─testthat:::expect_condition_matching(...)
18. │ └─testthat:::quasi_capture(...)
19. │ ├─testthat (local) .capture(...)
20. │ │ └─base::withCallingHandlers(...)
21. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
22. └─tern::forest_viewport(tbl)
23. ├─formatters::matrix_form(tbl)
24. └─rtables::matrix_form(tbl)
25. └─rtables (local) .local(obj, indent_rownames, expand_newlines, indent_size)
26. ├─formatters::make_row_df(obj)
27. └─rtables::make_row_df(obj)
28. └─rtables (local) .local(...)
29. ├─formatters::make_row_df(...)
30. └─rtables::make_row_df(...)
31. └─rtables (local) .local(...)
32. ├─formatters::pagdfrow(...)
33. │ └─base::data.frame(...)
34. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
35. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
36. └─rtables (local) .local(x, colwidths, max_width)
37. ├─base::unlist(...)
38. └─base::mapply(...)
39. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
40. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
41. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
42. ├─base::unlist(...)
43. └─base::vapply(...)
44. ├─formatters (local) FUN(X[[i]], ...)
45. └─formatters (local) FUN(X[[i]], ...)
46. └─base::vapply(...)
47. └─formatters (local) FUN(X[[i]], ...)
48. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
49. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✔ | 9 18 | g_km [19.8s]
✔ | 3 6 | g_lineplot [4.2s]
✔ | 4 10 | g_step [1.5s]
✔ | 2 2 | g_waterfall [1.0s]
✔ | 5 1 | h_adsl_adlb_merge_using_worst_flag
✔ | 1 1 | h_format_row
✔ | 13 21 | h_km [1.6s]
✔ | 16 38 | h_logistic_regression [1.3s]
✔ | 7 7 | h_map_for_count_abnormal
✔ | 2 2 | h_pkparam_sort
✖ | 1 4 4 | h_response_biomarkers_subgroups
────────────────────────────────────────────────────────────────────────────────
Error ('test-h_response_biomarkers_subgroups.R:113:3'): h_tab_rsp_one_biomarker works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-h_response_biomarkers_subgroups.R:113:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─tern::h_tab_rsp_one_biomarker(...)
10. └─tern::h_tab_one_biomarker(...)
11. └─rtables::build_table(lyt, df = df)
12. └─rtables::update_ref_indexing(tab)
13. ├─formatters::make_row_df(tt)
14. └─rtables::make_row_df(tt)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::make_row_df(...)
23. └─rtables::make_row_df(...)
24. └─rtables (local) .local(...)
25. ├─formatters::pagdfrow(...)
26. │ └─base::data.frame(...)
27. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
28. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
29. └─rtables (local) .local(x, colwidths, max_width)
30. ├─base::unlist(...)
31. └─base::mapply(...)
32. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
33. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
34. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
35. ├─base::unlist(...)
36. └─base::vapply(...)
37. ├─formatters (local) FUN(X[[i]], ...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─base::vapply(...)
40. └─formatters (local) FUN(X[[i]], ...)
41. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
42. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✔ | 14 15 | h_response_subgroups [1.5s]
✔ | 3 5 | h_stack_by_baskets
✔ | 8 43 | h_step [1.8s]
✖ | 1 3 6 | h_survival_biomarkers_subgroups
────────────────────────────────────────────────────────────────────────────────
Error ('test-h_survival_biomarkers_subgroups.R:96:3'): h_tab_surv_one_biomarker works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-h_survival_biomarkers_subgroups.R:96:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─tern::h_tab_surv_one_biomarker(...)
10. └─tern::h_tab_one_biomarker(...)
11. └─rtables::build_table(lyt, df = df)
12. └─rtables::update_ref_indexing(tab)
13. ├─formatters::make_row_df(tt)
14. └─rtables::make_row_df(tt)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::make_row_df(...)
23. └─rtables::make_row_df(...)
24. └─rtables (local) .local(...)
25. ├─formatters::pagdfrow(...)
26. │ └─base::data.frame(...)
27. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
28. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
29. └─rtables (local) .local(x, colwidths, max_width)
30. ├─base::unlist(...)
31. └─base::mapply(...)
32. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
33. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
34. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
35. ├─base::unlist(...)
36. └─base::vapply(...)
37. ├─formatters (local) FUN(X[[i]], ...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─base::vapply(...)
40. └─formatters (local) FUN(X[[i]], ...)
41. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
42. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✔ | 16 17 | h_survival_duration_subgroups [2.1s]
✔ | 2 0 | imputation_rule
✔ | 7 | individual_patient_plot
✖ | 4 2 17 | logistic_regression [6.5s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-logistic_regression.R:178:3'): logistic_regression_cols works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% ... at test-logistic_regression.R:178:3
2. └─rtables::build_table(...)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[2L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-logistic_regression.R:224:3'): summarize_logistic works as expected for interaction model with continuous variable
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-logistic_regression.R:224:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-logistic_regression.R:248:3'): summarize_logistic works as expected for interaction model with categorical variable
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-logistic_regression.R:248:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-logistic_regression.R:268:3'): summarize_logistic works as expected for simple model without interactions
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-logistic_regression.R:268:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 1 6 18 | make_afun
────────────────────────────────────────────────────────────────────────────────
Error ('test-make_afun.R:208:3'): make_afun by default removes results from `.in_ref_col`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(iris) at test-make_afun.R:208:3
2. └─rtables::build_table(., iris)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 3 4 5 | odds_ratio [1.0s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-odds_ratio.R:118:3'): estimate_odds_ratio estimates right OR and CI (unstratified analysis)
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = data) at test-odds_ratio.R:118:3
2. └─rtables::build_table(., df = data)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-odds_ratio.R:136:3'): estimate_odds_ratio estimates right OR and CI (stratified analysis)
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─withr::with_options(...) at test-odds_ratio.R:136:3
2. │ └─base::force(code)
3. ├─... %>% build_table(df = data)
4. └─rtables::build_table(., df = data)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-odds_ratio.R:174:3'): estimate_odds_ratio works with strata and combined groups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─withr::with_options(...) at test-odds_ratio.R:174:3
2. │ └─base::force(code)
3. └─rtables::build_table(lyt = lyt, df = anl)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::pagdfrow(...)
12. │ └─base::data.frame(...)
13. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables (local) .local(x, colwidths, max_width)
16. ├─base::unlist(...)
17. └─base::mapply(...)
18. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
19. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. ├─base::unlist(...)
22. └─base::vapply(...)
23. ├─formatters (local) FUN(X[[i]], ...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─base::vapply(...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
28. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 3 9 16 | prop_diff
────────────────────────────────────────────────────────────────────────────────
Error ('test-prop_diff.R:243:3'): `estimate_proportion_diff` is compatible with `rtables`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta) at test-prop_diff.R:243:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-prop_diff.R:269:3'): `estimate_proportion_diff` and cmh is compatible with `rtables`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta) at test-prop_diff.R:269:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-prop_diff.R:298:3'): `estimate_proportion_diff` and strat_newcombe is compatible with `rtables`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta) at test-prop_diff.R:298:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 1 0 | prune_occurrences [3.7s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-prune_occurrences.R:2:1'): (code run outside of `test_that()`)
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-prune_occurrences.R:2:1
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::pagdfrow(...)
23. │ └─base::data.frame(...)
24. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables (local) .local(x, colwidths, max_width)
27. ├─base::unlist(...)
28. └─base::mapply(...)
29. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
30. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. ├─base::unlist(...)
33. └─base::vapply(...)
34. ├─formatters (local) FUN(X[[i]], ...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─base::vapply(...)
37. └─formatters (local) FUN(X[[i]], ...)
38. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
39. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 4 2 5 | response_biomarkers_subgroups [2.4s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-response_biomarkers_subgroups.R:100:3'): tabulate_rsp_biomarkers works as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_rsp_biomarkers(df) at test-response_biomarkers_subgroups.R:100:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_rsp_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::make_row_df(...)
21. └─rtables::make_row_df(...)
22. └─rtables (local) .local(...)
23. ├─formatters::pagdfrow(...)
24. │ └─base::data.frame(...)
25. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables (local) .local(x, colwidths, max_width)
28. ├─base::unlist(...)
29. └─base::mapply(...)
30. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
31. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. ├─base::unlist(...)
34. └─base::vapply(...)
35. ├─formatters (local) FUN(X[[i]], ...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─base::vapply(...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
40. └─formatters::open_font_dev(fontspec)
Error ('test-response_biomarkers_subgroups.R:119:3'): tabulate_rsp_biomarkers functions as expected with NULL subgroups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_rsp_biomarkers(df) at test-response_biomarkers_subgroups.R:119:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_rsp_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-response_biomarkers_subgroups.R:143:3'): tabulate_rsp_biomarkers works with only a single biomarker in the data frame
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(tabulate_rsp_biomarkers(df1)) at test-response_biomarkers_subgroups.R:143:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─tern::tabulate_rsp_biomarkers(df1)
10. └─base::lapply(...)
11. └─tern (local) FUN(X[[i]], ...)
12. └─tern::h_tab_rsp_one_biomarker(...)
13. └─tern::h_tab_one_biomarker(...)
14. └─rtables::build_table(lyt, df = df)
15. └─rtables::update_ref_indexing(tab)
16. ├─formatters::make_row_df(tt)
17. └─rtables::make_row_df(tt)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::make_row_df(...)
23. └─rtables::make_row_df(...)
24. └─rtables (local) .local(...)
25. ├─formatters::make_row_df(...)
26. └─rtables::make_row_df(...)
27. └─rtables (local) .local(...)
28. ├─formatters::pagdfrow(...)
29. │ └─base::data.frame(...)
30. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
31. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
32. └─rtables (local) .local(x, colwidths, max_width)
33. ├─base::unlist(...)
34. └─base::mapply(...)
35. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
36. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
37. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
38. ├─base::unlist(...)
39. └─base::vapply(...)
40. ├─formatters (local) FUN(X[[i]], ...)
41. └─formatters (local) FUN(X[[i]], ...)
42. └─base::vapply(...)
43. └─formatters (local) FUN(X[[i]], ...)
44. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
45. └─formatters::open_font_dev(fontspec)
Error ('test-response_biomarkers_subgroups.R:162:3'): tabulate_rsp_biomarkers na_str argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_rsp_biomarkers(df, na_str = "<No data>") at test-response_biomarkers_subgroups.R:162:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_rsp_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::make_row_df(...)
21. └─rtables::make_row_df(...)
22. └─rtables (local) .local(...)
23. ├─formatters::pagdfrow(...)
24. │ └─base::data.frame(...)
25. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables (local) .local(x, colwidths, max_width)
28. ├─base::unlist(...)
29. └─base::mapply(...)
30. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
31. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. ├─base::unlist(...)
34. └─base::vapply(...)
35. ├─formatters (local) FUN(X[[i]], ...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─base::vapply(...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
40. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 7 5 6 | response_subgroups [5.0s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-response_subgroups.R:98:3'): a_response_subgroups functions as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-response_subgroups.R:98:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:117:3'): tabulate_rsp_subgroups functions as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-response_subgroups.R:117:3
2. └─tern::tabulate_rsp_subgroups(...)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:138:3'): tabulate_rsp_subgroups correctly calculates column indices
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-response_subgroups.R:138:3
2. └─tern::tabulate_rsp_subgroups(...)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:183:3'): tabulate_rsp_subgroups functions as expected with valid input extreme values in OR table
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% tabulate_rsp_subgroups(df) at test-response_subgroups.R:183:3
2. └─tern::tabulate_rsp_subgroups(., df)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:200:3'): tabulate_rsp_subgroups functions as expected with NULL subgroups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-response_subgroups.R:200:3
2. └─tern::tabulate_rsp_subgroups(...)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::pagdfrow(...)
18. │ └─base::data.frame(...)
19. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables (local) .local(x, colwidths, max_width)
22. ├─base::unlist(...)
23. └─base::mapply(...)
24. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
25. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. ├─base::unlist(...)
28. └─base::vapply(...)
29. ├─formatters (local) FUN(X[[i]], ...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─base::vapply(...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
34. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:220:3'): tabulate_rsp_subgroups functions as expected when 0 obs in one arm
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-response_subgroups.R:220:3
2. └─tern::tabulate_rsp_subgroups(...)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:254:3'): tabulate_rsp_subgroups na_str argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-response_subgroups.R:254:3
2. └─tern::tabulate_rsp_subgroups(...)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 1 0 | rtables_access [3.8s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-rtables_access.R:1:1'): (code run outside of `test_that()`)
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-rtables_access.R:1:1
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::pagdfrow(...)
23. │ └─base::data.frame(...)
24. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables (local) .local(x, colwidths, max_width)
27. ├─base::unlist(...)
28. └─base::mapply(...)
29. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
30. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. ├─base::unlist(...)
33. └─base::vapply(...)
34. ├─formatters (local) FUN(X[[i]], ...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─base::vapply(...)
37. └─formatters (local) FUN(X[[i]], ...)
38. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
39. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 1 0 | score_occurrences
────────────────────────────────────────────────────────────────────────────────
Error ('test-score_occurrences.R:52:3'): (code run outside of `test_that()`)
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─base::eval(...)
2. │ └─base::eval(...)
3. │ ├─... %>% prune_table() at test-score_occurrences.R:52:3
4. │ └─rtables::build_table(lyt, dfae, alt_counts_df = attr(dfae, "dfsl"))
5. │ └─rtables::update_ref_indexing(tab)
6. │ ├─formatters::make_row_df(tt)
7. │ └─rtables::make_row_df(tt)
8. │ └─rtables (local) .local(...)
9. │ ├─formatters::make_row_df(...)
10. │ └─rtables::make_row_df(...)
11. │ └─rtables (local) .local(...)
12. │ ├─formatters::make_row_df(...)
13. │ └─rtables::make_row_df(...)
14. │ └─rtables (local) .local(...)
15. │ ├─formatters::pagdfrow(...)
16. │ │ └─base::data.frame(...)
17. │ ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. │ └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. │ └─rtables (local) .local(x, colwidths, max_width)
20. │ ├─base::unlist(...)
21. │ └─base::mapply(...)
22. │ └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. │ ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. │ └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. │ ├─base::unlist(...)
26. │ └─base::vapply(...)
27. │ ├─formatters (local) FUN(X[[i]], ...)
28. │ └─formatters (local) FUN(X[[i]], ...)
29. │ └─base::vapply(...)
30. │ └─formatters (local) FUN(X[[i]], ...)
31. │ └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. │ └─formatters::open_font_dev(fontspec)
33. └─rtables::prune_table(.)
34. └─methods::is(tt, "TableRow")
────────────────────────────────────────────────────────────────────────────────
✖ | 5 10 14 | split_cols_by_groups [1.5s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-split_cols_by_groups.R:61:3'): split_cols_by_groups manages combinations of columns
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-split_cols_by_groups.R:61:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-split_cols_by_groups.R:76:3'): split_cols_by_groups manages combinations of columns with reference
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-split_cols_by_groups.R:76:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-split_cols_by_groups.R:95:3'): split_cols_by_groups equivalent to split_cols_by when no groups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-split_cols_by_groups.R:95:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-split_cols_by_groups.R:113:3'): split_cols_by_groups equivalent to split_cols_by with ref_col but no groups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-split_cols_by_groups.R:113:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-split_cols_by_groups.R:131:3'): split_cols_by_groups manages combinations of columns with reference and alt_counts_df
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM_ANL, alt_counts_df = DM) at test-split_cols_by_groups.R:131:3
2. └─rtables::build_table(., DM_ANL, alt_counts_df = DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✔ | 9 11 | stat
✖ | 3 3 6 | summarize_ancova [3.1s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-summarize_ancova.R:89:3'): summarize_ancova works with healthy inputs
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(iris) at test-summarize_ancova.R:89:3
2. └─rtables::build_table(., iris)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_ancova.R:120:3'): summarize_ancova works with interaction
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(iris_new) at test-summarize_ancova.R:120:3
2. └─rtables::build_table(., iris_new)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_ancova.R:180:3'): summarize_ancova works with irregular arm levels
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(adrs_single, alt_counts_df = adsl) at test-summarize_ancova.R:180:3
2. └─rtables::build_table(., adrs_single, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 1 3 3 | summarize_change
────────────────────────────────────────────────────────────────────────────────
Error ('test-summarize_change.R:72:3'): summarize_change works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dta_test) at test-summarize_change.R:72:3
2. └─rtables::build_table(., dta_test)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 3 0 | summarize_colvars [1.4s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-summarize_colvars.R:25:3'): summarize_colvars works as expected without column split and default behavior
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, dta) at test-summarize_colvars.R:25:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_colvars.R:40:3'): summarize_colvars works as expected with column split
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, dta) at test-summarize_colvars.R:40:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_colvars.R:60:3'): summarize_colvars works when selecting statistics and custom formatting
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, dta) at test-summarize_colvars.R:60:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 10 4 4 | summarize_coxreg [9.5s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-summarize_coxreg.R:82:3'): summarize_coxreg adds the univariate Cox regression layer to rtables
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:82:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:123:3'): summarize_coxreg .section_div argument works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:123:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:137:3'): summarize_coxreg works with interactions in univariate case
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:137:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:151:3'): summarize_coxreg 'at' argument works in univariate case
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:151:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:164:3'): summarize_coxreg `na_str` argument works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:164:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:177:3'): summarize_coxreg works without treatment arm in univariate case
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:177:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:191:3'): summarize_coxreg works with numeric covariate without treatment arm in univariate case
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:191:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:207:3'): summarize_coxreg works with character covariate in univariate case when interaction = TRUE
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:207:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:235:3'): summarize_coxreg adds the multivariate Cox regression layer to rtables
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:235:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:274:3'): warning/error messages work
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-summarize_coxreg.R:274:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% build_table(df = dta_bladder)
8. └─rtables::build_table(., df = dta_bladder)
9. └─rtables::update_ref_indexing(tab)
10. ├─formatters::make_row_df(tt)
11. └─rtables::make_row_df(tt)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::make_row_df(...)
23. └─rtables::make_row_df(...)
24. └─rtables (local) .local(...)
25. ├─formatters::pagdfrow(...)
26. │ └─base::data.frame(...)
27. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
28. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
29. └─rtables (local) .local(x, colwidths, max_width)
30. ├─base::unlist(...)
31. └─base::mapply(...)
32. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
33. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
34. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
35. ├─base::unlist(...)
36. └─base::vapply(...)
37. ├─formatters (local) FUN(X[[i]], ...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─base::vapply(...)
40. └─formatters (local) FUN(X[[i]], ...)
41. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
42. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 2 15 23 | summarize_glm_count [5.7s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-summarize_glm_count.R:413:3'): summarize_glm_count works with healthy inputs
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(anl) at test-summarize_glm_count.R:413:3
2. └─rtables::build_table(., anl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_glm_count.R:444:3'): summarize_glm_count (negative binomial) works with healthy inputs
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(anl) at test-summarize_glm_count.R:444:3
2. └─rtables::build_table(., anl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 6 10 10 | summarize_num_patients [1.8s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-summarize_num_patients.R:44:3'): summarize_num_patients works as expected with healthy input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-summarize_num_patients.R:44:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:152:3'): summarize_num_patients with count_by works as expected with healthy input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-summarize_num_patients.R:152:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:202:5'): summarize_num_patients with count_by different combinations works as expected with healthy input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-summarize_num_patients.R:202:5
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:223:3'): analyze_num_patients works well for pagination
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% prune_table() at test-summarize_num_patients.R:223:3
2. ├─rtables::prune_table(.)
3. │ └─methods::is(tt, "TableRow")
4. └─rtables::build_table(., df)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:262:3'): summarize_num_patients works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adae) at test-summarize_num_patients.R:262:3
2. └─rtables::build_table(., tern_ex_adae)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:291:3'): analyze_num_patients works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adae) at test-summarize_num_patients.R:291:3
2. └─rtables::build_table(., tern_ex_adae)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 7 2 2 | summarize_patients_exposure_in_cols [1.3s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-summarize_patients_exposure_in_cols.R:42:3'): summarize_patients_exposure_in_cols works well with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:42:3
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:56:3'): summarize_patients_exposure_in_cols works well with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:56:3
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:81:5'): summarize_patients_exposure_in_cols returns correct column label when no variable split and only one statistic
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:81:5
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:103:3'): analyze_patients_exposure_in_cols works well with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:103:3
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:116:3'): analyze_patients_exposure_in_cols works well with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:116:3
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:135:5'): analyze_patients_exposure_in_cols works with no variable split and only one statistic
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:135:5
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:163:3'): patients_exposure_in_cols works with totals after the row split
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, anl_local) at test-summarize_patients_exposure_in_cols.R:163:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 4 2 3 | survival_biomarkers_subgroups [3.7s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-survival_biomarkers_subgroups.R:82:3'): tabulate_survival_biomarkers works as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_survival_biomarkers(df, time_unit = as.character(adtte_f$AVALU[1])) at test-survival_biomarkers_subgroups.R:82:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_surv_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::make_row_df(...)
21. └─rtables::make_row_df(...)
22. └─rtables (local) .local(...)
23. ├─formatters::pagdfrow(...)
24. │ └─base::data.frame(...)
25. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables (local) .local(x, colwidths, max_width)
28. ├─base::unlist(...)
29. └─base::mapply(...)
30. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
31. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. ├─base::unlist(...)
34. └─base::vapply(...)
35. ├─formatters (local) FUN(X[[i]], ...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─base::vapply(...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
40. └─formatters::open_font_dev(fontspec)
Error ('test-survival_biomarkers_subgroups.R:102:3'): tabulate_survival_biomarkers functions as expected with NULL subgroups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_survival_biomarkers(df, time_unit = as.character(adtte_f$AVALU[1])) at test-survival_biomarkers_subgroups.R:102:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_surv_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_biomarkers_subgroups.R:126:3'): tabulate_survival_biomarkers works with only a single biomarker in the data frame
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(tabulate_survival_biomarkers(df1)) at test-survival_biomarkers_subgroups.R:126:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─tern::tabulate_survival_biomarkers(df1)
10. └─base::lapply(...)
11. └─tern (local) FUN(X[[i]], ...)
12. └─tern::h_tab_surv_one_biomarker(...)
13. └─tern::h_tab_one_biomarker(...)
14. └─rtables::build_table(lyt, df = df)
15. └─rtables::update_ref_indexing(tab)
16. ├─formatters::make_row_df(tt)
17. └─rtables::make_row_df(tt)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::make_row_df(...)
23. └─rtables::make_row_df(...)
24. └─rtables (local) .local(...)
25. ├─formatters::make_row_df(...)
26. └─rtables::make_row_df(...)
27. └─rtables (local) .local(...)
28. ├─formatters::pagdfrow(...)
29. │ └─base::data.frame(...)
30. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
31. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
32. └─rtables (local) .local(x, colwidths, max_width)
33. ├─base::unlist(...)
34. └─base::mapply(...)
35. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
36. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
37. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
38. ├─base::unlist(...)
39. └─base::vapply(...)
40. ├─formatters (local) FUN(X[[i]], ...)
41. └─formatters (local) FUN(X[[i]], ...)
42. └─base::vapply(...)
43. └─formatters (local) FUN(X[[i]], ...)
44. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
45. └─formatters::open_font_dev(fontspec)
Error ('test-survival_biomarkers_subgroups.R:146:3'): tabulate_survival_biomarkers na_str argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_survival_biomarkers(...) at test-survival_biomarkers_subgroups.R:146:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_surv_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::make_row_df(...)
21. └─rtables::make_row_df(...)
22. └─rtables (local) .local(...)
23. ├─formatters::pagdfrow(...)
24. │ └─base::data.frame(...)
25. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables (local) .local(x, colwidths, max_width)
28. ├─base::unlist(...)
29. └─base::mapply(...)
30. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
31. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. ├─base::unlist(...)
34. └─base::vapply(...)
35. ├─formatters (local) FUN(X[[i]], ...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─base::vapply(...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
40. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 4 4 5 | survival_coxph_pairwise [1.7s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-survival_coxph_pairwise.R:88:3'): coxph_pairwise works with default arguments and no stratification factors
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_coxph_pairwise.R:88:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_coxph_pairwise.R:110:3'): coxph_pairwise works with customized arguments and no stratification factors
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_coxph_pairwise.R:110:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_coxph_pairwise.R:133:3'): coxph_pairwise works with default arguments and stratification factors
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_coxph_pairwise.R:133:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_coxph_pairwise.R:155:3'): coxph_pairwise works with customized arguments and stratification factors
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_coxph_pairwise.R:155:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 7 4 6 | survival_duration_subgroups [6.1s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-survival_duration_subgroups.R:81:3'): a_survival_subgroups functions as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-survival_duration_subgroups.R:81:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:98:3'): tabulate_survival_subgroups functions as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:98:3
2. └─tern::tabulate_survival_subgroups(., df, time_unit = adtte$AVALU[1])
3. └─rtables::build_table(lyt_survtime, df = df$survtime)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:113:3'): tabulate_survival_subgroups functions as expected with NULL subgroups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:113:3
2. └─tern::tabulate_survival_subgroups(., df, time_unit = adtte$AVALU[1])
3. └─rtables::build_table(lyt_survtime, df = df$survtime)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::pagdfrow(...)
18. │ └─base::data.frame(...)
19. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables (local) .local(x, colwidths, max_width)
22. ├─base::unlist(...)
23. └─base::mapply(...)
24. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
25. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. ├─base::unlist(...)
28. └─base::vapply(...)
29. ├─formatters (local) FUN(X[[i]], ...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─base::vapply(...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
34. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:130:3'): tabulate_survival_subgroups functions as expected with extreme values in subgroups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:130:3
2. └─tern::tabulate_survival_subgroups(., df, time_unit = adtte$AVALU[1])
3. └─rtables::build_table(lyt_survtime, df = df$survtime)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:145:3'): tabulate_survival_subgroups functions as expected when one arm has 0 records
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:145:3
2. └─tern::tabulate_survival_subgroups(...)
3. └─rtables::build_table(lyt_survtime, df = df$survtime)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:165:3'): tabulate_survival_subgroups works correctly with both `n_tot` and `n_tot_events` in `vars`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:165:3
2. └─tern::tabulate_survival_subgroups(...)
3. └─rtables::build_table(lyt_hr, df = df$hr)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:222:3'): tabulate_survival_subgroups na_str argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:222:3
2. └─tern::tabulate_survival_subgroups(...)
3. └─rtables::build_table(lyt_survtime, df = df$survtime)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 3 4 4 | survival_time
────────────────────────────────────────────────────────────────────────────────
Error ('test-survival_time.R:94:3'): surv_time works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_time.R:94:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_time.R:117:3'): surv_time works with customized arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_time.R:117:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_time.R:144:3'): surv_time works with referential footnotes
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_time.R:144:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 5 5 6 | survival_timepoint [1.5s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-survival_timepoint.R:72:3'): surv_timepoint works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_timepoint.R:72:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_timepoint.R:97:3'): surv_timepoint works with customized arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_timepoint.R:97:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_timepoint.R:173:3'): surv_timepoint for survival diff works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_timepoint.R:173:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_timepoint.R:199:3'): surv_timepoint for survival diff works with customized arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_timepoint.R:199:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_timepoint.R:225:3'): surv_timepoint works with method = both
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-survival_timepoint.R:225:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─... %>% build_table(df = adtte_f)
10. └─rtables::build_table(., df = adtte_f)
11. └─rtables::update_ref_indexing(tab)
12. ├─formatters::make_row_df(tt)
13. └─rtables::make_row_df(tt)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::make_row_df(...)
19. └─rtables::make_row_df(...)
20. └─rtables (local) .local(...)
21. ├─formatters::pagdfrow(...)
22. │ └─base::data.frame(...)
23. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables (local) .local(x, colwidths, max_width)
26. ├─base::unlist(...)
27. └─base::mapply(...)
28. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
29. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. ├─base::unlist(...)
32. └─base::vapply(...)
33. ├─formatters (local) FUN(X[[i]], ...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─base::vapply(...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
38. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 5 6 7 | test_proportion_diff
────────────────────────────────────────────────────────────────────────────────
Error ('test-test_proportion_diff.R:124:3'): test_proportion_diff returns right result
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta) at test-test_proportion_diff.R:124:3
2. └─rtables::build_table(., df = dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-test_proportion_diff.R:142:3'): test_proportion_diff edge case: all responder by chisq
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta) at test-test_proportion_diff.R:142:3
2. └─rtables::build_table(., df = dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-test_proportion_diff.R:160:3'): test_proportion_diff edge case: all responder by schouten
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta) at test-test_proportion_diff.R:160:3
2. └─rtables::build_table(., df = dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-test_proportion_diff.R:178:3'): test_proportion_diff edge case: all responder by fisher
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta) at test-test_proportion_diff.R:178:3
2. └─rtables::build_table(., df = dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-test_proportion_diff.R:199:3'): test_proportion_diff edge case: all responder by CMH
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta) at test-test_proportion_diff.R:199:3
2. └─rtables::build_table(., df = dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✔ | 59 79 | utils [2.5s]
✔ | 42 | utils_checkmate
✔ | 6 22 | utils_default_stats_formats_labels
✔ | 13 26 | utils_factor
✖ | 2 1 1 | utils_ggplot [1.3s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-utils_ggplot.R:15:3'): rtable2gg works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = dta) at test-utils_ggplot.R:15:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-utils_ggplot.R:50:3'): rtable2gg works with multiple column splits
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = dta2) at test-utils_ggplot.R:50:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✔ | 8 | utils_grid
✖ | 9 11 14 | utils_rtables [9.1s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-utils_rtables.R:2:3'): to_string_matrix works correctly
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% prune_table() at test-utils_rtables.R:2:3
2. ├─rtables::prune_table(.)
3. │ └─methods::is(tt, "TableRow")
4. └─rtables::build_table(., DM)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::make_row_df(...)
19. └─rtables::make_row_df(...)
20. └─rtables (local) .local(...)
21. ├─formatters::make_row_df(...)
22. └─rtables::make_row_df(...)
23. └─rtables (local) .local(...)
24. ├─formatters::pagdfrow(...)
25. │ └─base::data.frame(...)
26. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
28. └─rtables (local) .local(x, colwidths, max_width)
29. ├─base::unlist(...)
30. └─base::mapply(...)
31. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
32. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
34. ├─base::unlist(...)
35. └─base::vapply(...)
36. ├─formatters (local) FUN(X[[i]], ...)
37. └─formatters (local) FUN(X[[i]], ...)
38. └─base::vapply(...)
39. └─formatters (local) FUN(X[[i]], ...)
40. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
41. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:98:3'): add_rowcounts works with one row split
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-utils_rtables.R:98:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:108:3'): add_rowcounts works with multiple column and row splits
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-utils_rtables.R:108:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:123:3'): add_rowcounts works with pruning
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% prune_table() at test-utils_rtables.R:123:3
2. ├─rtables::prune_table(.)
3. │ └─methods::is(tt, "TableRow")
4. └─rtables::build_table(., DM)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::pagdfrow(...)
19. │ └─base::data.frame(...)
20. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables (local) .local(x, colwidths, max_width)
23. ├─base::unlist(...)
24. └─base::mapply(...)
25. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
26. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. ├─base::unlist(...)
29. └─base::vapply(...)
30. ├─formatters (local) FUN(X[[i]], ...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─base::vapply(...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
35. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:150:3'): add_rowcounts works with alt_counts = TRUE
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% prune_table() at test-utils_rtables.R:150:3
2. ├─rtables::prune_table(.)
3. │ └─methods::is(tt, "TableRow")
4. └─rtables::build_table(., DM, alt_counts_df = DM_alt)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::pagdfrow(...)
19. │ └─base::data.frame(...)
20. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables (local) .local(x, colwidths, max_width)
23. ├─base::unlist(...)
24. └─base::mapply(...)
25. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
26. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. ├─base::unlist(...)
29. └─base::vapply(...)
30. ├─formatters (local) FUN(X[[i]], ...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─base::vapply(...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
35. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:181:3'): as.rtable.data.frame works correctly
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'toString': argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─testthat::expect_snapshot(res) at test-utils_rtables.R:181:3
2. └─rlang::cnd_signal(state$error)
Error ('test-utils_rtables.R:246:3'): append_varlabels works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, DM) at test-utils_rtables.R:246:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:258:3'): append_varlabels correctly concatenates multiple variable labels
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, DM) at test-utils_rtables.R:258:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:269:3'): default na_str works properly
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tmp) at test-utils_rtables.R:269:3
2. └─rtables::build_table(., tmp)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
✖ | 7 1 | utils_split_fun [2.0s]
────────────────────────────────────────────────────────────────────────────────
Error ('test-utils_split_fun.R:11:3'): analyze_vars works as expected with ref_group_position last split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = tern_ex_adsl) at test-utils_split_fun.R:11:3
2. └─rtables::build_table(., df = tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:31:3'): compare_vars works as expected with ref_group first split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = tern_ex_adsl) at test-utils_split_fun.R:31:3
2. └─rtables::build_table(., df = tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:43:3'): summarize_ancova works as expected with ref_group position split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adsl) at test-utils_split_fun.R:43:3
2. └─rtables::build_table(., tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:64:3'): binary endpoint layouts work as expected with ref_group_position last split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(adrs_f) at test-utils_split_fun.R:64:3
2. └─rtables::build_table(., adrs_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:85:3'): time to event layouts works as expected with ref_group_position last split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(adtte_f) at test-utils_split_fun.R:85:3
2. └─rtables::build_table(., adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:108:3'): summarize_ancova works as expected with ref_group_position last split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(anl) at test-utils_split_fun.R:108:3
2. └─rtables::build_table(., anl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:128:3'): level_order works for integerish and characters
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(iris) at test-utils_split_fun.R:128:3
2. └─rtables::build_table(., iris)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
────────────────────────────────────────────────────────────────────────────────
══ Results ═════════════════════════════════════════════════════════════════════
Duration: 212.7 s
── Skipped tests (482) ─────────────────────────────────────────────────────────
• On CRAN (482): 'test-abnormal.R:24:3', 'test-abnormal.R:51:3',
'test-abnormal.R:80:3', 'test-abnormal.R:186:3',
'test-abnormal_by_baseline.R:16:3', 'test-abnormal_by_baseline.R:46:3',
'test-abnormal_by_baseline.R:80:3', 'test-abnormal_by_marked.R:80:3',
'test-abnormal_by_marked.R:135:3', 'test-abnormal_by_worst_grade.R:43:3',
'test-abnormal_by_worst_grade_worsen.R:64:3',
'test-abnormal_by_worst_grade_worsen.R:82:3',
'test-abnormal_by_worst_grade_worsen.R:102:3',
'test-abnormal_by_worst_grade_worsen.R:122:3',
'test-abnormal_by_worst_grade_worsen.R:142:3',
'test-abnormal_by_worst_grade_worsen.R:162:3',
'test-abnormal_by_worst_grade_worsen.R:184:3',
'test-analyze_variables.R:7:3', 'test-analyze_variables.R:17:3',
'test-analyze_variables.R:31:3', 'test-analyze_variables.R:39:3',
'test-analyze_variables.R:48:3', 'test-analyze_variables.R:62:3',
'test-analyze_variables.R:72:3', 'test-analyze_variables.R:81:3',
'test-analyze_variables.R:90:3', 'test-analyze_variables.R:113:3',
'test-analyze_variables.R:127:3', 'test-analyze_variables.R:134:3',
'test-analyze_variables.R:143:3', 'test-analyze_variables.R:152:3',
'test-analyze_variables.R:171:3', 'test-analyze_variables.R:228:3',
'test-analyze_variables.R:245:3', 'test-analyze_variables.R:275:3',
'test-analyze_variables.R:502:3', 'test-bland-altman.R:79:3',
'test-bland-altman.R:103:3', 'test-compare_variables.R:9:3',
'test-compare_variables.R:20:3', 'test-compare_variables.R:29:3',
'test-compare_variables.R:47:3', 'test-compare_variables.R:69:3',
'test-compare_variables.R:78:3', 'test-control_logistic.R:8:3',
'test-control_step.R:5:3', 'test-control_survival.R:7:3',
'test-control_survival.R:21:3', 'test-control_survival.R:36:3',
'test-count_cumulative.R:12:3', 'test-count_cumulative.R:30:3',
'test-count_cumulative.R:44:3', 'test-count_cumulative.R:62:3',
'test-count_missed_doses.R:8:3', 'test-count_missed_doses.R:17:3',
'test-count_missed_doses.R:24:3', 'test-count_missed_doses.R:35:3',
'test-count_occurrences.R:10:3', 'test-count_occurrences.R:65:3',
'test-count_occurrences.R:109:3', 'test-count_occurrences_by_grade.R:26:3',
'test-count_occurrences_by_grade.R:40:3',
'test-count_occurrences_by_grade.R:48:3',
'test-count_occurrences_by_grade.R:67:3',
'test-count_occurrences_by_grade.R:84:3',
'test-count_occurrences_by_grade.R:135:3',
'test-count_patients_events_in_cols.R:23:3',
'test-count_patients_events_in_cols.R:39:3',
'test-count_patients_with_event.R:14:3',
'test-count_patients_with_event.R:31:3',
'test-count_patients_with_event.R:121:3',
'test-count_patients_with_flags.R:14:3',
'test-count_patients_with_flags.R:31:3',
'test-count_patients_with_flags.R:52:3', 'test-count_values.R:8:3',
'test-count_values.R:24:3', 'test-count_values.R:39:3',
'test-count_values.R:47:3', 'test-count_values.R:55:3',
'test-count_values.R:91:3', 'test-count_values.R:101:3', 'test-coxph.R:5:3',
'test-coxph.R:17:3', 'test-coxph.R:41:3', 'test-coxph.R:56:3',
'test-coxph.R:108:3', 'test-coxreg.R:44:3', 'test-coxreg.R:56:3',
'test-coxreg.R:67:3', 'test-coxreg.R:80:3', 'test-coxreg.R:92:3',
'test-coxreg.R:124:3', 'test-coxreg.R:136:3', 'test-coxreg.R:147:3',
'test-coxreg.R:158:3', 'test-coxreg.R:170:3', 'test-coxreg.R:182:3',
'test-coxreg.R:193:3', 'test-coxreg.R:204:3', 'test-coxreg.R:216:3',
'test-coxreg.R:225:3', 'test-coxreg.R:248:3', 'test-coxreg.R:298:3',
'test-coxreg.R:309:3', 'test-coxreg.R:320:3', 'test-coxreg.R:360:3',
'test-coxreg.R:374:3', 'test-coxreg.R:388:3', 'test-coxreg.R:533:3',
'test-coxreg.R:585:3', 'test-decorate_grob.R:54:3',
'test-decorate_grob.R:123:3', 'test-desctools_binom_diff.R:18:3',
'test-desctools_binom_diff.R:33:3', 'test-desctools_binom_diff.R:42:3',
'test-desctools_binom_diff.R:51:3', 'test-desctools_binom_diff.R:63:3',
'test-df_explicit_na.R:22:3', 'test-df_explicit_na.R:36:3',
'test-df_explicit_na.R:44:3', 'test-df_explicit_na.R:57:3',
'test-df_explicit_na.R:70:3', 'test-estimate_incidence_rate.R:10:3',
'test-estimate_incidence_rate.R:24:3', 'test-estimate_incidence_rate.R:31:3',
'test-estimate_incidence_rate.R:38:3', 'test-estimate_incidence_rate.R:45:3',
'test-estimate_incidence_rate.R:56:3', 'test-estimate_incidence_rate.R:81:3',
'test-estimate_multinom_rsp.R:6:3', 'test-estimate_multinom_rsp.R:14:3',
'test-estimate_proportion.R:9:3', 'test-estimate_proportion.R:29:3',
'test-estimate_proportion.R:43:3', 'test-estimate_proportion.R:78:3',
'test-estimate_proportion.R:106:3', 'test-estimate_proportion.R:131:3',
'test-estimate_proportion.R:142:3', 'test-estimate_proportion.R:154:3',
'test-estimate_proportion.R:170:3', 'test-estimate_proportion.R:181:3',
'test-estimate_proportion.R:203:3', 'test-estimate_proportion.R:210:3',
'test-estimate_proportion.R:223:3', 'test-estimate_proportion.R:247:3',
'test-fit_rsp_step.R:29:3', 'test-fit_rsp_step.R:58:3',
'test-fit_rsp_step.R:85:3', 'test-fit_survival_step.R:34:3',
'test-fit_survival_step.R:65:3', 'test-fit_survival_step.R:88:3',
'test-formatting_functions.R:5:3', 'test-formatting_functions.R:12:3',
'test-formatting_functions.R:19:3', 'test-formatting_functions.R:26:3',
'test-formatting_functions.R:33:3', 'test-formatting_functions.R:40:3',
'test-formatting_functions.R:47:3', 'test-formatting_functions.R:59:3',
'test-formatting_functions.R:66:3', 'test-formatting_functions.R:73:3',
'test-formatting_functions.R:82:3', 'test-formatting_functions.R:91:3',
'test-formatting_functions.R:116:3', 'test-formatting_functions.R:125:3',
'test-formatting_functions.R:134:3', 'test-formatting_functions.R:150:3',
'test-formatting_functions.R:158:3', 'test-formatting_functions.R:172:3',
'test-formatting_functions.R:181:3', 'test-formatting_functions.R:190:3',
'test-g_km.R:15:3', 'test-g_km.R:28:3', 'test-g_km.R:40:3',
'test-g_km.R:62:3', 'test-g_km.R:77:3', 'test-g_km.R:114:3',
'test-g_km.R:128:3', 'test-g_km.R:147:3', 'test-g_km.R:162:3',
'test-g_lineplot.R:9:3', 'test-g_lineplot.R:30:3', 'test-g_lineplot.R:50:3',
'test-g_step.R:18:3', 'test-g_step.R:28:3', 'test-g_step.R:36:3',
'test-g_step.R:65:3', 'test-g_waterfall.R:7:3', 'test-g_waterfall.R:29:3',
'test-h_adsl_adlb_merge_using_worst_flag.R:11:3',
'test-h_adsl_adlb_merge_using_worst_flag.R:25:3',
'test-h_adsl_adlb_merge_using_worst_flag.R:39:3',
'test-h_adsl_adlb_merge_using_worst_flag.R:55:5',
'test-h_adsl_adlb_merge_using_worst_flag.R:68:3', 'test-h_format_row.R:11:3',
'test-h_km.R:11:3', 'test-h_km.R:18:3', 'test-h_km.R:26:3',
'test-h_km.R:34:3', 'test-h_km.R:43:3', 'test-h_km.R:58:3',
'test-h_km.R:68:3', 'test-h_km.R:77:3', 'test-h_km.R:84:3',
'test-h_km.R:99:3', 'test-h_km.R:118:3', 'test-h_km.R:131:3',
'test-h_km.R:143:3', 'test-h_logistic_regression.R:28:3',
'test-h_logistic_regression.R:49:3', 'test-h_logistic_regression.R:74:3',
'test-h_logistic_regression.R:107:3', 'test-h_logistic_regression.R:146:5',
'test-h_logistic_regression.R:204:3', 'test-h_logistic_regression.R:218:3',
'test-h_logistic_regression.R:230:3', 'test-h_logistic_regression.R:247:3',
'test-h_logistic_regression.R:283:3', 'test-h_logistic_regression.R:300:3',
'test-h_logistic_regression.R:317:3', 'test-h_logistic_regression.R:336:3',
'test-h_logistic_regression.R:373:3', 'test-h_logistic_regression.R:395:3',
'test-h_logistic_regression.R:442:3', 'test-h_map_for_count_abnormal.R:27:3',
'test-h_map_for_count_abnormal.R:49:3',
'test-h_map_for_count_abnormal.R:71:5',
'test-h_map_for_count_abnormal.R:98:5',
'test-h_map_for_count_abnormal.R:125:5',
'test-h_map_for_count_abnormal.R:154:5',
'test-h_map_for_count_abnormal.R:182:5', 'test-h_pkparam_sort.R:6:3',
'test-h_pkparam_sort.R:17:3', 'test-h_response_biomarkers_subgroups.R:27:3',
'test-h_response_biomarkers_subgroups.R:51:3',
'test-h_response_biomarkers_subgroups.R:69:3',
'test-h_response_biomarkers_subgroups.R:92:3',
'test-h_response_subgroups.R:28:3', 'test-h_response_subgroups.R:38:3',
'test-h_response_subgroups.R:55:3', 'test-h_response_subgroups.R:67:3',
'test-h_response_subgroups.R:79:3', 'test-h_response_subgroups.R:98:3',
'test-h_response_subgroups.R:108:3', 'test-h_response_subgroups.R:122:3',
'test-h_response_subgroups.R:141:3', 'test-h_response_subgroups.R:155:3',
'test-h_response_subgroups.R:167:3', 'test-h_response_subgroups.R:179:3',
'test-h_response_subgroups.R:201:3', 'test-h_response_subgroups.R:224:3',
'test-h_stack_by_baskets.R:9:3', 'test-h_stack_by_baskets.R:48:5',
'test-h_stack_by_baskets.R:76:5', 'test-h_step.R:30:3', 'test-h_step.R:56:3',
'test-h_step.R:124:3', 'test-h_step.R:193:3', 'test-h_step.R:240:3',
'test-h_step.R:310:3', 'test-h_step.R:435:3', 'test-h_step.R:476:3',
'test-h_survival_biomarkers_subgroups.R:37:3',
'test-h_survival_biomarkers_subgroups.R:57:3',
'test-h_survival_biomarkers_subgroups.R:75:3',
'test-h_survival_duration_subgroups.R:35:3',
'test-h_survival_duration_subgroups.R:55:3',
'test-h_survival_duration_subgroups.R:75:3',
'test-h_survival_duration_subgroups.R:102:3',
'test-h_survival_duration_subgroups.R:124:3',
'test-h_survival_duration_subgroups.R:139:3',
'test-h_survival_duration_subgroups.R:151:3',
'test-h_survival_duration_subgroups.R:170:3',
'test-h_survival_duration_subgroups.R:183:3',
'test-h_survival_duration_subgroups.R:198:3',
'test-h_survival_duration_subgroups.R:212:3',
'test-h_survival_duration_subgroups.R:226:3',
'test-h_survival_duration_subgroups.R:238:3',
'test-h_survival_duration_subgroups.R:263:3',
'test-h_survival_duration_subgroups.R:275:3',
'test-h_survival_duration_subgroups.R:294:3', 'test-imputation_rule.R:13:3',
'test-imputation_rule.R:31:3', 'test-logistic_regression.R:153:3',
'test-logistic_regression.R:171:3', 'test-make_afun.R:35:3',
'test-make_afun.R:88:3', 'test-make_afun.R:122:3', 'test-make_afun.R:170:3',
'test-make_afun.R:238:3', 'test-make_afun.R:266:3', 'test-odds_ratio.R:14:3',
'test-odds_ratio.R:41:3', 'test-odds_ratio.R:58:3', 'test-odds_ratio.R:83:3',
'test-prop_diff.R:9:3', 'test-prop_diff.R:30:3', 'test-prop_diff.R:49:3',
'test-prop_diff.R:81:3', 'test-prop_diff.R:120:3', 'test-prop_diff.R:150:3',
'test-prop_diff.R:225:3', 'test-prop_diff.R:333:3', 'test-prop_diff.R:357:3',
'test-response_biomarkers_subgroups.R:35:3',
'test-response_biomarkers_subgroups.R:74:3',
'test-response_subgroups.R:30:3', 'test-response_subgroups.R:42:3',
'test-response_subgroups.R:62:3', 'test-response_subgroups.R:85:3',
'test-response_subgroups.R:240:3', 'test-split_cols_by_groups.R:11:3',
'test-split_cols_by_groups.R:20:3', 'test-split_cols_by_groups.R:27:3',
'test-split_cols_by_groups.R:34:3', 'test-split_cols_by_groups.R:41:3',
'test-split_cols_by_groups.R:52:3', 'test-split_cols_by_groups.R:157:3',
'test-split_cols_by_groups.R:166:3', 'test-split_cols_by_groups.R:175:3',
'test-split_cols_by_groups.R:184:3', 'test-stat.R:8:5', 'test-stat.R:36:5',
'test-stat.R:109:5', 'test-stat.R:132:5', 'test-stat.R:202:3',
'test-stat.R:221:3', 'test-stat.R:276:3', 'test-stat.R:287:3',
'test-stat.R:297:3', 'test-summarize_ancova.R:10:3',
'test-summarize_ancova.R:45:3', 'test-summarize_ancova.R:85:3',
'test-summarize_change.R:16:3', 'test-summarize_change.R:34:3',
'test-summarize_change.R:53:3', 'test-summarize_coxreg.R:36:3',
'test-summarize_coxreg.R:48:3', 'test-summarize_coxreg.R:60:3',
'test-summarize_coxreg.R:76:3', 'test-summarize_glm_count.R:18:3',
'test-summarize_glm_count.R:35:3', 'test-summarize_glm_count.R:73:3',
'test-summarize_glm_count.R:90:3', 'test-summarize_glm_count.R:110:3',
'test-summarize_glm_count.R:126:3', 'test-summarize_glm_count.R:164:3',
'test-summarize_glm_count.R:180:3', 'test-summarize_glm_count.R:219:3',
'test-summarize_glm_count.R:236:3', 'test-summarize_glm_count.R:273:7',
'test-summarize_glm_count.R:322:3', 'test-summarize_glm_count.R:344:3',
'test-summarize_glm_count.R:368:3', 'test-summarize_glm_count.R:392:3',
'test-summarize_num_patients.R:6:3', 'test-summarize_num_patients.R:14:3',
'test-summarize_num_patients.R:22:3', 'test-summarize_num_patients.R:33:3',
'test-summarize_num_patients.R:90:3', 'test-summarize_num_patients.R:99:3',
'test-summarize_num_patients.R:108:3', 'test-summarize_num_patients.R:119:3',
'test-summarize_num_patients.R:130:3', 'test-summarize_num_patients.R:141:3',
'test-summarize_patients_exposure_in_cols.R:23:3',
'test-summarize_patients_exposure_in_cols.R:35:3',
'test-survival_biomarkers_subgroups.R:36:3',
'test-survival_biomarkers_subgroups.R:65:3',
'test-survival_coxph_pairwise.R:18:3', 'test-survival_coxph_pairwise.R:39:3',
'test-survival_coxph_pairwise.R:59:3', 'test-survival_coxph_pairwise.R:80:3',
'test-survival_duration_subgroups.R:33:3',
'test-survival_duration_subgroups.R:52:3',
'test-survival_duration_subgroups.R:68:3',
'test-survival_duration_subgroups.R:210:3', 'test-survival_time.R:16:3',
'test-survival_time.R:37:3', 'test-survival_time.R:56:3',
'test-survival_time.R:83:3', 'test-survival_timepoint.R:17:3',
'test-survival_timepoint.R:39:3', 'test-survival_timepoint.R:61:3',
'test-survival_timepoint.R:137:3', 'test-survival_timepoint.R:162:3',
'test-test_proportion_diff.R:12:3', 'test-test_proportion_diff.R:24:3',
'test-test_proportion_diff.R:49:3', 'test-test_proportion_diff.R:63:3',
'test-test_proportion_diff.R:89:3', 'test-test_proportion_diff.R:113:3',
'test-utils.R:5:3', 'test-utils.R:17:3', 'test-utils.R:30:3',
'test-utils.R:37:3', 'test-utils.R:57:3', 'test-utils.R:65:3',
'test-utils.R:73:3', 'test-utils.R:96:3', 'test-utils.R:105:3',
'test-utils.R:113:3', 'test-utils.R:121:3', 'test-utils.R:167:3',
'test-utils.R:182:3', 'test-utils.R:191:3', 'test-utils.R:202:5',
'test-utils.R:212:3', 'test-utils.R:223:3', 'test-utils.R:234:5',
'test-utils.R:246:5', 'test-utils.R:256:3', 'test-utils.R:267:3',
'test-utils.R:278:5', 'test-utils.R:290:5', 'test-utils.R:300:3',
'test-utils.R:311:3', 'test-utils.R:322:5', 'test-utils.R:334:5',
'test-utils.R:344:3', 'test-utils.R:355:3', 'test-utils.R:366:5',
'test-utils.R:378:5', 'test-utils.R:388:3', 'test-utils.R:399:3',
'test-utils.R:410:5', 'test-utils.R:422:5', 'test-utils.R:434:5',
'test-utils.R:446:3', 'test-utils.R:457:5', 'test-utils.R:469:5',
'test-utils.R:481:5', 'test-utils.R:504:5', 'test-utils.R:516:5',
'test-utils.R:528:5', 'test-utils.R:540:3', 'test-utils.R:551:5',
'test-utils.R:563:5', 'test-utils.R:573:3', 'test-utils.R:584:3',
'test-utils.R:595:5', 'test-utils.R:607:5', 'test-utils.R:619:5',
'test-utils.R:631:3', 'test-utils.R:642:5', 'test-utils.R:654:5',
'test-utils.R:666:5', 'test-utils.R:678:3', 'test-utils.R:689:5',
'test-utils.R:701:5', 'test-utils.R:713:5',
'test-utils_default_stats_formats_labels.R:4:3',
'test-utils_default_stats_formats_labels.R:108:3',
'test-utils_default_stats_formats_labels.R:159:3',
'test-utils_default_stats_formats_labels.R:194:3',
'test-utils_default_stats_formats_labels.R:205:3',
'test-utils_default_stats_formats_labels.R:215:3',
'test-utils_factor.R:25:3', 'test-utils_factor.R:36:3',
'test-utils_factor.R:51:3', 'test-utils_factor.R:58:3',
'test-utils_factor.R:74:3', 'test-utils_factor.R:86:3',
'test-utils_factor.R:97:3', 'test-utils_factor.R:115:3',
'test-utils_factor.R:138:3', 'test-utils_factor.R:149:3',
'test-utils_factor.R:159:3', 'test-utils_factor.R:167:3',
'test-utils_factor.R:175:3', 'test-utils_ggplot.R:59:3',
'test-utils_rtables.R:44:3', 'test-utils_rtables.R:52:3',
'test-utils_rtables.R:66:3', 'test-utils_rtables.R:71:3',
'test-utils_rtables.R:87:3', 'test-utils_rtables.R:94:3',
'test-utils_rtables.R:169:3', 'test-utils_rtables.R:202:3',
'test-utils_rtables.R:215:3', 'test-utils_rtables.R:228:3',
'test-utils_rtables.R:235:3'
── Failed tests ────────────────────────────────────────────────────────────────
Error ('test-abnormal.R:98:3'): count_abnormal works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-abnormal.R:98:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-abnormal.R:122:3'): count_abnormal works with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df2) at test-abnormal.R:122:3
2. └─rtables::build_table(., df2)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-abnormal.R:154:3'): count_abnormal works with default arguments and visit
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-abnormal.R:154:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-abnormal_by_baseline.R:89:3'): count_abnormal_by_baseline works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-abnormal_by_baseline.R:89:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-abnormal_by_baseline.R:103:3'): count_abnormal_by_baseline works with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df2) at test-abnormal_by_baseline.R:103:3
2. └─rtables::build_table(., df2)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-abnormal_by_marked.R:242:3'): count_abnormal_by_marked works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adlb_f) at test-abnormal_by_marked.R:242:3
2. └─rtables::build_table(., df = adlb_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-abnormal_by_worst_grade.R:60:3'): count_abnormal_by_worst_grade works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adlb_f) at test-abnormal_by_worst_grade.R:60:3
2. └─rtables::build_table(., df = adlb_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::pagdfrow(...)
23. │ └─base::data.frame(...)
24. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables (local) .local(x, colwidths, max_width)
27. ├─base::unlist(...)
28. └─base::mapply(...)
29. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
30. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. ├─base::unlist(...)
33. └─base::vapply(...)
34. ├─formatters (local) FUN(X[[i]], ...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─base::vapply(...)
37. └─formatters (local) FUN(X[[i]], ...)
38. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
39. └─formatters::open_font_dev(fontspec)
Error ('test-abnormal_by_worst_grade_worsen.R:195:3'): count_abnormal_lab_worsen_by_baseline
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = tern_ex_adsl) at test-abnormal_by_worst_grade_worsen.R:195:3
2. └─rtables::build_table(., df = df, alt_counts_df = tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::pagdfrow(...)
23. │ └─base::data.frame(...)
24. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables (local) .local(x, colwidths, max_width)
27. ├─base::unlist(...)
28. └─base::mapply(...)
29. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
30. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. ├─base::unlist(...)
33. └─base::vapply(...)
34. ├─formatters (local) FUN(X[[i]], ...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─base::vapply(...)
37. └─formatters (local) FUN(X[[i]], ...)
38. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
39. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:292:3'): `analyze_vars` works with healthy input, default `na.rm = TRUE`.
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta_test) at test-analyze_variables.R:292:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:307:3'): `analyze_vars` works with healthy input, and control function.
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta_test) at test-analyze_variables.R:307:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:318:3'): `analyze_vars` works with healthy input, alternative `na.rm = FALSE`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta_test) at test-analyze_variables.R:318:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:327:3'): `analyze_vars` works with healthy factor input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% analyze_vars(vars = "foo") %>% ... at test-analyze_variables.R:327:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:338:3'): `analyze_vars` works with healthy factor input, alternative `na.rm = FALSE`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dta) at test-analyze_variables.R:338:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:362:3'): `analyze_vars` works with factors and different denominators
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─start %>% analyze_vars("RACE", denom = "n") %>% ... at test-analyze_variables.R:362:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:382:3'): analyze_vars works in demographic table example
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-analyze_variables.R:382:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:400:3'): `analyze_vars` works with character input and gives the same result as with factor
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_warning(result <- build_table(l, dta)) at test-analyze_variables.R:400:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─rtables::build_table(l, dta)
8. └─rtables::update_ref_indexing(tab)
9. ├─formatters::make_row_df(tt)
10. └─rtables::make_row_df(tt)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:424:3'): `analyze_vars` does not work with sparse character input due to missing statistics
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(build_table(l, dta_factor)) at test-analyze_variables.R:424:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rtables::build_table(l, dta_factor)
10. └─rtables::update_ref_indexing(tab)
11. ├─formatters::make_row_df(tt)
12. └─rtables::make_row_df(tt)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::pagdfrow(...)
18. │ └─base::data.frame(...)
19. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables (local) .local(x, colwidths, max_width)
22. ├─base::unlist(...)
23. └─base::mapply(...)
24. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
25. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. ├─base::unlist(...)
28. └─base::vapply(...)
29. ├─formatters (local) FUN(X[[i]], ...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─base::vapply(...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
34. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:432:3'): `analyze_vars` works with logical input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% analyze_vars(vars = "boo") %>% ... at test-analyze_variables.R:432:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:443:3'): `analyze_vars` works with healthy logical input, alternative `na.rm = FALSE`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dta) at test-analyze_variables.R:443:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:468:3'): `analyze_vars` works with empty named numeric variables
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dta) at test-analyze_variables.R:468:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:485:3'): analyze_vars 'na_str' argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dta) at test-analyze_variables.R:485:3
2. └─rtables::build_table(., dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_variables.R:512:3'): analyze_vars works correctly with auto formats
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dt) at test-analyze_variables.R:512:3
2. └─rtables::build_table(., dt)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:8:3'): analyze_vars_in_cols works correctly
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt = lyt, df = adpp) at test-analyze_vars_in_cols.R:8:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::make_row_df(...)
19. └─rtables::make_row_df(...)
20. └─rtables (local) .local(...)
21. ├─formatters::pagdfrow(...)
22. │ └─base::data.frame(...)
23. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables (local) .local(x, colwidths, max_width)
26. ├─base::unlist(...)
27. └─base::mapply(...)
28. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
29. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. ├─base::unlist(...)
32. └─base::vapply(...)
33. ├─formatters (local) FUN(X[[i]], ...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─base::vapply(...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
38. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:50:3'): custom labels can be set with row_labels for analyze_colvars
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = adpp) at test-analyze_vars_in_cols.R:50:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:102:3'): custom labels can be set with row_labels and summarize
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = adpp) at test-analyze_vars_in_cols.R:102:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:171:3'): summarize works with nested analyze
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(build_table(lyt, df = tern_ex_adpp, alt_counts_df = tern_ex_adsl)) at test-analyze_vars_in_cols.R:171:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rtables::build_table(lyt, df = tern_ex_adpp, alt_counts_df = tern_ex_adsl)
10. └─rtables::update_ref_indexing(tab)
11. ├─formatters::make_row_df(tt)
12. └─rtables::make_row_df(tt)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::make_row_df(...)
21. └─rtables::make_row_df(...)
22. └─rtables (local) .local(...)
23. ├─formatters::pagdfrow(...)
24. │ └─base::data.frame(...)
25. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables (local) .local(x, colwidths, max_width)
28. ├─base::unlist(...)
29. └─base::mapply(...)
30. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
31. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. ├─base::unlist(...)
34. └─base::vapply(...)
35. ├─formatters (local) FUN(X[[i]], ...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─base::vapply(...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
40. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:251:3'): analyze_vars_in_cols works well with categorical data
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─testthat::expect_snapshot(...) at test-analyze_vars_in_cols.R:251:3
2. └─rlang::cnd_signal(state$error)
Error ('test-analyze_vars_in_cols.R:316:3'): analyze_vars_in_cols works with imputation rule
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt = lyt, df = df) at test-analyze_vars_in_cols.R:316:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::make_row_df(...)
19. └─rtables::make_row_df(...)
20. └─rtables (local) .local(...)
21. ├─formatters::make_row_df(...)
22. └─rtables::make_row_df(...)
23. └─rtables (local) .local(...)
24. ├─formatters::make_row_df(...)
25. └─rtables::make_row_df(...)
26. └─rtables (local) .local(...)
27. ├─formatters::pagdfrow(...)
28. │ └─base::data.frame(...)
29. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
30. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
31. └─rtables (local) .local(x, colwidths, max_width)
32. ├─base::unlist(...)
33. └─base::mapply(...)
34. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
35. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
36. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
37. ├─base::unlist(...)
38. └─base::vapply(...)
39. ├─formatters (local) FUN(X[[i]], ...)
40. └─formatters (local) FUN(X[[i]], ...)
41. └─base::vapply(...)
42. └─formatters (local) FUN(X[[i]], ...)
43. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
44. └─formatters::open_font_dev(fontspec)
Error ('test-analyze_vars_in_cols.R:419:3'): analyze_vars_in_cols works with caching
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt = lyt, df = df) at test-analyze_vars_in_cols.R:419:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::make_row_df(...)
19. └─rtables::make_row_df(...)
20. └─rtables (local) .local(...)
21. ├─formatters::make_row_df(...)
22. └─rtables::make_row_df(...)
23. └─rtables (local) .local(...)
24. ├─formatters::make_row_df(...)
25. └─rtables::make_row_df(...)
26. └─rtables (local) .local(...)
27. ├─formatters::pagdfrow(...)
28. │ └─base::data.frame(...)
29. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
30. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
31. └─rtables (local) .local(x, colwidths, max_width)
32. ├─base::unlist(...)
33. └─base::mapply(...)
34. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
35. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
36. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
37. ├─base::unlist(...)
38. └─base::vapply(...)
39. ├─formatters (local) FUN(X[[i]], ...)
40. └─formatters (local) FUN(X[[i]], ...)
41. └─base::vapply(...)
42. └─formatters (local) FUN(X[[i]], ...)
43. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
44. └─formatters::open_font_dev(fontspec)
Error ('test-compare_variables.R:97:3'): compare_vars works with default settings in rtables layout pipeline
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, tern_ex_adsl) at test-compare_variables.R:97:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-compare_variables.R:112:3'): compare_vars works with custom settings
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = tern_ex_adsl) at test-compare_variables.R:112:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-compare_variables.R:119:3'): compare_vars 'na_str' argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adsl) at test-compare_variables.R:119:3
2. └─rtables::build_table(., tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_cumulative.R:72:3'): count_cumulative works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_cumulative.R:72:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_cumulative.R:91:3'): count_cumulative works with customized arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_cumulative.R:91:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_missed_doses.R:45:3'): count_missed_doses works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_missed_doses.R:45:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences.R:131:3'): count_occurrences functions as expected with valid input and default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─lyt %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences.R:131:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences.R:157:3'): count_occurrences functions as expected with label row specified
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─lyt %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences.R:157:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences.R:166:3'): count_occurrences works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adae) at test-count_occurrences.R:166:3
2. └─rtables::build_table(., tern_ex_adae)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences.R:226:3'): summarize_occurrences functions as expected with valid input and default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─lyt %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences.R:226:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences.R:235:3'): summarize_occurrences works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adae) at test-count_occurrences.R:235:3
2. └─rtables::build_table(., tern_ex_adae)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:142:3'): count_occurrences_by_grade works with default arguments for intensity
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:142:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:166:3'): count_occurrences_by_grade label works when more than one variables are analyzed
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:166:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:189:3'): count_occurrences_by_grade works with custom arguments for grade
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:189:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:225:3'): summarize_occurrences_by_grade works with default arguments for intensity
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:225:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:272:3'): summarize_occurrences_by_grade works with custom arguments for grade
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:272:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:303:3'): count_occurrences_by_grade works with trim_levels_in_group split function
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df, alt_counts_df = df_adsl) at test-count_occurrences_by_grade.R:303:3
2. └─rtables::build_table(., df, alt_counts_df = df_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:340:3'): summarize_ and count_occurrences_by_grade works with pagination and sorting
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% ... at test-count_occurrences_by_grade.R:340:3
2. ├─rtables::sort_at_path(...)
3. │ └─base::NROW(tt)
4. ├─rtables::sort_at_path(...)
5. │ └─base::NROW(tt)
6. ├─rtables::sort_at_path(...)
7. │ └─base::NROW(tt)
8. └─rtables::build_table(., df, alt_counts_df = df_adsl)
9. └─rtables::update_ref_indexing(tab)
10. ├─formatters::make_row_df(tt)
11. └─rtables::make_row_df(tt)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-count_occurrences_by_grade.R:388:3'): count_occurrences_by_grade works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adae) at test-count_occurrences_by_grade.R:388:3
2. └─rtables::build_table(., tern_ex_adae)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_events_in_cols.R:44:3'): summarize_patients_events_in_cols works well with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_patients_events_in_cols.R:44:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_events_in_cols.R:60:3'): summarize_patients_events_in_cols works well with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_patients_events_in_cols.R:60:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_event.R:60:3'): count_patients_with_event works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, test_data, alt_counts_df = test_adsl_like) at test-count_patients_with_event.R:60:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_event.R:98:3'): count_patients_with_event works as expected for different column count
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = test_data, alt_counts_df = test_adsl_like) at test-count_patients_with_event.R:98:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_event.R:126:3'): count_patients_with_flags works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% ... at test-count_patients_with_event.R:126:3
2. └─rtables::build_table(., tern_ex_adae, alt_counts_df = tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_flags.R:127:3'): count_patients_with_flags works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = test_data, alt_counts_df = test_adsl_like) at test-count_patients_with_flags.R:127:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_flags.R:175:3'): count_patients_with_flags works as expected when specifying table_names
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = test_data, alt_counts_df = test_adsl_like) at test-count_patients_with_flags.R:175:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_flags.R:214:3'): count_patients_with_flags works with label row specified
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = adae_local, alt_counts_df = tern_ex_adsl) at test-count_patients_with_flags.R:214:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_flags.R:240:3'): count_patients_with_flags custom variable label behaviour works with var_labels specified
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = adae_local, alt_counts_df = tern_ex_adsl) at test-count_patients_with_flags.R:240:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-count_patients_with_flags.R:310:3'): count_patients_with_flags works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(adae, alt_counts_df = tern_ex_adsl) at test-count_patients_with_flags.R:310:3
2. └─rtables::build_table(., adae, alt_counts_df = tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_values.R:59:3'): count_values works as expected with a single value
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(iris) at test-count_values.R:59:3
2. └─rtables::build_table(., iris)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-count_values.R:73:3'): count_values works as expected with multiple values and variables
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-count_values.R:73:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-count_values.R:110:3'): count_values works as expected with multiple values and variables
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% count_values("x", values = TRUE) %>% ... at test-count_values.R:110:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-estimate_incidence_rate.R:94:3'): estimate_incidence_rate works as expected with healthy input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-estimate_incidence_rate.R:94:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-estimate_multinom_rsp.R:45:3'): estimate_multinomial_response returns right result
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt = lyt, df = dta_test) at test-estimate_multinom_rsp.R:45:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-estimate_proportion.R:267:3'): `estimate_proportion` is compatible with `rtables`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(anl) at test-estimate_proportion.R:267:3
2. └─rtables::build_table(., anl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-estimate_proportion.R:291:3'): `estimate_proportion` and strat_wilson is compatible with `rtables`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-estimate_proportion.R:291:3
2. │ └─base::withCallingHandlers(...)
3. ├─... %>% build_table(anl)
4. └─rtables::build_table(., anl)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-estimate_proportion.R:322:5'): `estimate_proportion` and strat_wilson with equal weights and specific number of interactions works with `rtables`
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'obj' in selecting a method for function 'get_formatted_cells': argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% get_formatted_cells() at test-estimate_proportion.R:322:5
2. ├─rtables::get_formatted_cells(.)
3. ├─rtables::build_table(., anl)
4. │ └─rtables::update_ref_indexing(tab)
5. │ ├─formatters::make_row_df(tt)
6. │ └─rtables::make_row_df(tt)
7. │ └─rtables (local) .local(...)
8. │ ├─formatters::make_row_df(...)
9. │ └─rtables::make_row_df(...)
10. │ └─rtables (local) .local(...)
11. │ ├─formatters::pagdfrow(...)
12. │ │ └─base::data.frame(...)
13. │ ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
14. │ └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
15. │ └─rtables (local) .local(x, colwidths, max_width)
16. │ ├─base::unlist(...)
17. │ └─base::mapply(...)
18. │ └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
19. │ ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. │ └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. │ ├─base::unlist(...)
22. │ └─base::vapply(...)
23. │ ├─formatters (local) FUN(X[[i]], ...)
24. │ └─formatters (local) FUN(X[[i]], ...)
25. │ └─base::vapply(...)
26. │ └─formatters (local) FUN(X[[i]], ...)
27. │ └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
28. │ └─formatters::open_font_dev(fontspec)
29. └─base::.handleSimpleError(...)
30. └─base (local) h(simpleError(msg, call))
Error ('test-formatting_functions.R:242:3'): auto formatting works with NA values
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-formatting_functions.R:242:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─... %>% build_table(dt)
10. └─rtables::build_table(., dt)
11. └─rtables::update_ref_indexing(tab)
12. ├─formatters::make_row_df(tt)
13. └─rtables::make_row_df(tt)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::pagdfrow(...)
19. │ └─base::data.frame(...)
20. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables (local) .local(x, colwidths, max_width)
23. ├─base::unlist(...)
24. └─base::mapply(...)
25. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
26. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. ├─base::unlist(...)
29. └─base::vapply(...)
30. ├─formatters (local) FUN(X[[i]], ...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─base::vapply(...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
35. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:18:3'): g_forest default plot works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% tabulate_rsp_subgroups(df) at test-g_forest.R:18:3
2. └─tern::tabulate_rsp_subgroups(., df)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:48:3'): g_forest works with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-g_forest.R:48:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─tern::g_forest(...)
10. ├─formatters::matrix_form(tbl)
11. └─rtables::matrix_form(tbl)
12. └─rtables (local) .local(obj, indent_rownames, expand_newlines, indent_size)
13. ├─formatters::make_row_df(obj)
14. └─rtables::make_row_df(obj)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:91:3'): g_forest as_list argument works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% tabulate_rsp_subgroups(df) at test-g_forest.R:91:3
2. └─tern::tabulate_rsp_subgroups(., df)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:103:3'): g_forest argument deprecation warnings work
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% tabulate_rsp_subgroups(df) at test-g_forest.R:103:3
2. └─tern::tabulate_rsp_subgroups(., df)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:144:3'): forest_grob works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─lifecycle::expect_deprecated(...) at test-g_forest.R:144:3
2. │ └─testthat::expect_warning(...)
3. │ └─testthat:::expect_condition_matching(...)
4. │ └─testthat:::quasi_capture(...)
5. │ ├─testthat (local) .capture(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
8. ├─lifecycle::expect_deprecated(...)
9. │ └─testthat::expect_warning(...)
10. │ └─testthat:::expect_condition_matching(...)
11. │ └─testthat:::quasi_capture(...)
12. │ ├─testthat (local) .capture(...)
13. │ │ └─base::withCallingHandlers(...)
14. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
15. ├─lifecycle::expect_deprecated(...)
16. │ └─testthat::expect_warning(...)
17. │ └─testthat:::expect_condition_matching(...)
18. │ └─testthat:::quasi_capture(...)
19. │ ├─testthat (local) .capture(...)
20. │ │ └─base::withCallingHandlers(...)
21. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
22. ├─lifecycle::expect_deprecated(...)
23. │ └─testthat::expect_warning(...)
24. │ └─testthat:::expect_condition_matching(...)
25. │ └─testthat:::quasi_capture(...)
26. │ ├─testthat (local) .capture(...)
27. │ │ └─base::withCallingHandlers(...)
28. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
29. ├─lifecycle::expect_deprecated(...)
30. │ └─testthat::expect_warning(...)
31. │ └─testthat:::expect_condition_matching(...)
32. │ └─testthat:::quasi_capture(...)
33. │ ├─testthat (local) .capture(...)
34. │ │ └─base::withCallingHandlers(...)
35. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
36. ├─lifecycle::expect_deprecated(...)
37. │ └─testthat::expect_warning(...)
38. │ └─testthat:::expect_condition_matching(...)
39. │ └─testthat:::quasi_capture(...)
40. │ ├─testthat (local) .capture(...)
41. │ │ └─base::withCallingHandlers(...)
42. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
43. ├─lifecycle::expect_deprecated(...)
44. │ └─testthat::expect_warning(...)
45. │ └─testthat:::expect_condition_matching(...)
46. │ └─testthat:::quasi_capture(...)
47. │ ├─testthat (local) .capture(...)
48. │ │ └─base::withCallingHandlers(...)
49. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
50. └─tern:::forest_grob(...)
51. ├─formatters::matrix_form(tbl)
52. └─rtables::matrix_form(tbl)
53. └─rtables (local) .local(obj, indent_rownames, expand_newlines, indent_size)
54. ├─formatters::make_row_df(obj)
55. └─rtables::make_row_df(obj)
56. └─rtables (local) .local(...)
57. ├─formatters::make_row_df(...)
58. └─rtables::make_row_df(...)
59. └─rtables (local) .local(...)
60. ├─formatters::pagdfrow(...)
61. │ └─base::data.frame(...)
62. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
63. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
64. └─rtables (local) .local(x, colwidths, max_width)
65. ├─base::unlist(...)
66. └─base::mapply(...)
67. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
68. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
69. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
70. ├─base::unlist(...)
71. └─base::vapply(...)
72. ├─formatters (local) FUN(X[[i]], ...)
73. └─formatters (local) FUN(X[[i]], ...)
74. └─base::vapply(...)
75. └─formatters (local) FUN(X[[i]], ...)
76. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
77. └─formatters::open_font_dev(fontspec)
Error ('test-g_forest.R:176:3'): forest_viewport works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─lifecycle::expect_deprecated(lifecycle::expect_deprecated(lifecycle::expect_deprecated(v <- forest_viewport(tbl)))) at test-g_forest.R:176:3
2. │ └─testthat::expect_warning(...)
3. │ └─testthat:::expect_condition_matching(...)
4. │ └─testthat:::quasi_capture(...)
5. │ ├─testthat (local) .capture(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
8. ├─lifecycle::expect_deprecated(lifecycle::expect_deprecated(v <- forest_viewport(tbl)))
9. │ └─testthat::expect_warning(...)
10. │ └─testthat:::expect_condition_matching(...)
11. │ └─testthat:::quasi_capture(...)
12. │ ├─testthat (local) .capture(...)
13. │ │ └─base::withCallingHandlers(...)
14. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
15. ├─lifecycle::expect_deprecated(v <- forest_viewport(tbl))
16. │ └─testthat::expect_warning(...)
17. │ └─testthat:::expect_condition_matching(...)
18. │ └─testthat:::quasi_capture(...)
19. │ ├─testthat (local) .capture(...)
20. │ │ └─base::withCallingHandlers(...)
21. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
22. └─tern::forest_viewport(tbl)
23. ├─formatters::matrix_form(tbl)
24. └─rtables::matrix_form(tbl)
25. └─rtables (local) .local(obj, indent_rownames, expand_newlines, indent_size)
26. ├─formatters::make_row_df(obj)
27. └─rtables::make_row_df(obj)
28. └─rtables (local) .local(...)
29. ├─formatters::make_row_df(...)
30. └─rtables::make_row_df(...)
31. └─rtables (local) .local(...)
32. ├─formatters::pagdfrow(...)
33. │ └─base::data.frame(...)
34. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
35. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
36. └─rtables (local) .local(x, colwidths, max_width)
37. ├─base::unlist(...)
38. └─base::mapply(...)
39. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
40. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
41. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
42. ├─base::unlist(...)
43. └─base::vapply(...)
44. ├─formatters (local) FUN(X[[i]], ...)
45. └─formatters (local) FUN(X[[i]], ...)
46. └─base::vapply(...)
47. └─formatters (local) FUN(X[[i]], ...)
48. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
49. └─formatters::open_font_dev(fontspec)
Error ('test-h_response_biomarkers_subgroups.R:113:3'): h_tab_rsp_one_biomarker works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-h_response_biomarkers_subgroups.R:113:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─tern::h_tab_rsp_one_biomarker(...)
10. └─tern::h_tab_one_biomarker(...)
11. └─rtables::build_table(lyt, df = df)
12. └─rtables::update_ref_indexing(tab)
13. ├─formatters::make_row_df(tt)
14. └─rtables::make_row_df(tt)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::make_row_df(...)
23. └─rtables::make_row_df(...)
24. └─rtables (local) .local(...)
25. ├─formatters::pagdfrow(...)
26. │ └─base::data.frame(...)
27. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
28. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
29. └─rtables (local) .local(x, colwidths, max_width)
30. ├─base::unlist(...)
31. └─base::mapply(...)
32. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
33. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
34. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
35. ├─base::unlist(...)
36. └─base::vapply(...)
37. ├─formatters (local) FUN(X[[i]], ...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─base::vapply(...)
40. └─formatters (local) FUN(X[[i]], ...)
41. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
42. └─formatters::open_font_dev(fontspec)
Error ('test-h_survival_biomarkers_subgroups.R:96:3'): h_tab_surv_one_biomarker works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-h_survival_biomarkers_subgroups.R:96:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─tern::h_tab_surv_one_biomarker(...)
10. └─tern::h_tab_one_biomarker(...)
11. └─rtables::build_table(lyt, df = df)
12. └─rtables::update_ref_indexing(tab)
13. ├─formatters::make_row_df(tt)
14. └─rtables::make_row_df(tt)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::make_row_df(...)
23. └─rtables::make_row_df(...)
24. └─rtables (local) .local(...)
25. ├─formatters::pagdfrow(...)
26. │ └─base::data.frame(...)
27. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
28. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
29. └─rtables (local) .local(x, colwidths, max_width)
30. ├─base::unlist(...)
31. └─base::mapply(...)
32. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
33. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
34. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
35. ├─base::unlist(...)
36. └─base::vapply(...)
37. ├─formatters (local) FUN(X[[i]], ...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─base::vapply(...)
40. └─formatters (local) FUN(X[[i]], ...)
41. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
42. └─formatters::open_font_dev(fontspec)
Error ('test-logistic_regression.R:178:3'): logistic_regression_cols works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% ... at test-logistic_regression.R:178:3
2. └─rtables::build_table(...)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[2L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-logistic_regression.R:224:3'): summarize_logistic works as expected for interaction model with continuous variable
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-logistic_regression.R:224:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-logistic_regression.R:248:3'): summarize_logistic works as expected for interaction model with categorical variable
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-logistic_regression.R:248:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-logistic_regression.R:268:3'): summarize_logistic works as expected for simple model without interactions
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-logistic_regression.R:268:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-make_afun.R:208:3'): make_afun by default removes results from `.in_ref_col`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(iris) at test-make_afun.R:208:3
2. └─rtables::build_table(., iris)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-odds_ratio.R:118:3'): estimate_odds_ratio estimates right OR and CI (unstratified analysis)
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = data) at test-odds_ratio.R:118:3
2. └─rtables::build_table(., df = data)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-odds_ratio.R:136:3'): estimate_odds_ratio estimates right OR and CI (stratified analysis)
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─withr::with_options(...) at test-odds_ratio.R:136:3
2. │ └─base::force(code)
3. ├─... %>% build_table(df = data)
4. └─rtables::build_table(., df = data)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::pagdfrow(...)
13. │ └─base::data.frame(...)
14. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables (local) .local(x, colwidths, max_width)
17. ├─base::unlist(...)
18. └─base::mapply(...)
19. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
20. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. ├─base::unlist(...)
23. └─base::vapply(...)
24. ├─formatters (local) FUN(X[[i]], ...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─base::vapply(...)
27. └─formatters (local) FUN(X[[i]], ...)
28. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
29. └─formatters::open_font_dev(fontspec)
Error ('test-odds_ratio.R:174:3'): estimate_odds_ratio works with strata and combined groups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─withr::with_options(...) at test-odds_ratio.R:174:3
2. │ └─base::force(code)
3. └─rtables::build_table(lyt = lyt, df = anl)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::pagdfrow(...)
12. │ └─base::data.frame(...)
13. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
15. └─rtables (local) .local(x, colwidths, max_width)
16. ├─base::unlist(...)
17. └─base::mapply(...)
18. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
19. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
21. ├─base::unlist(...)
22. └─base::vapply(...)
23. ├─formatters (local) FUN(X[[i]], ...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─base::vapply(...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
28. └─formatters::open_font_dev(fontspec)
Error ('test-prop_diff.R:243:3'): `estimate_proportion_diff` is compatible with `rtables`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta) at test-prop_diff.R:243:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-prop_diff.R:269:3'): `estimate_proportion_diff` and cmh is compatible with `rtables`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta) at test-prop_diff.R:269:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-prop_diff.R:298:3'): `estimate_proportion_diff` and strat_newcombe is compatible with `rtables`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, df = dta) at test-prop_diff.R:298:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-prune_occurrences.R:2:1'): (code run outside of `test_that()`)
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-prune_occurrences.R:2:1
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::pagdfrow(...)
23. │ └─base::data.frame(...)
24. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables (local) .local(x, colwidths, max_width)
27. ├─base::unlist(...)
28. └─base::mapply(...)
29. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
30. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. ├─base::unlist(...)
33. └─base::vapply(...)
34. ├─formatters (local) FUN(X[[i]], ...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─base::vapply(...)
37. └─formatters (local) FUN(X[[i]], ...)
38. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
39. └─formatters::open_font_dev(fontspec)
Error ('test-response_biomarkers_subgroups.R:100:3'): tabulate_rsp_biomarkers works as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_rsp_biomarkers(df) at test-response_biomarkers_subgroups.R:100:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_rsp_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::make_row_df(...)
21. └─rtables::make_row_df(...)
22. └─rtables (local) .local(...)
23. ├─formatters::pagdfrow(...)
24. │ └─base::data.frame(...)
25. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables (local) .local(x, colwidths, max_width)
28. ├─base::unlist(...)
29. └─base::mapply(...)
30. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
31. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. ├─base::unlist(...)
34. └─base::vapply(...)
35. ├─formatters (local) FUN(X[[i]], ...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─base::vapply(...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
40. └─formatters::open_font_dev(fontspec)
Error ('test-response_biomarkers_subgroups.R:119:3'): tabulate_rsp_biomarkers functions as expected with NULL subgroups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_rsp_biomarkers(df) at test-response_biomarkers_subgroups.R:119:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_rsp_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-response_biomarkers_subgroups.R:143:3'): tabulate_rsp_biomarkers works with only a single biomarker in the data frame
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(tabulate_rsp_biomarkers(df1)) at test-response_biomarkers_subgroups.R:143:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─tern::tabulate_rsp_biomarkers(df1)
10. └─base::lapply(...)
11. └─tern (local) FUN(X[[i]], ...)
12. └─tern::h_tab_rsp_one_biomarker(...)
13. └─tern::h_tab_one_biomarker(...)
14. └─rtables::build_table(lyt, df = df)
15. └─rtables::update_ref_indexing(tab)
16. ├─formatters::make_row_df(tt)
17. └─rtables::make_row_df(tt)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::make_row_df(...)
23. └─rtables::make_row_df(...)
24. └─rtables (local) .local(...)
25. ├─formatters::make_row_df(...)
26. └─rtables::make_row_df(...)
27. └─rtables (local) .local(...)
28. ├─formatters::pagdfrow(...)
29. │ └─base::data.frame(...)
30. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
31. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
32. └─rtables (local) .local(x, colwidths, max_width)
33. ├─base::unlist(...)
34. └─base::mapply(...)
35. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
36. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
37. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
38. ├─base::unlist(...)
39. └─base::vapply(...)
40. ├─formatters (local) FUN(X[[i]], ...)
41. └─formatters (local) FUN(X[[i]], ...)
42. └─base::vapply(...)
43. └─formatters (local) FUN(X[[i]], ...)
44. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
45. └─formatters::open_font_dev(fontspec)
Error ('test-response_biomarkers_subgroups.R:162:3'): tabulate_rsp_biomarkers na_str argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_rsp_biomarkers(df, na_str = "<No data>") at test-response_biomarkers_subgroups.R:162:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_rsp_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::make_row_df(...)
21. └─rtables::make_row_df(...)
22. └─rtables (local) .local(...)
23. ├─formatters::pagdfrow(...)
24. │ └─base::data.frame(...)
25. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables (local) .local(x, colwidths, max_width)
28. ├─base::unlist(...)
29. └─base::mapply(...)
30. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
31. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. ├─base::unlist(...)
34. └─base::vapply(...)
35. ├─formatters (local) FUN(X[[i]], ...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─base::vapply(...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
40. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:98:3'): a_response_subgroups functions as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-response_subgroups.R:98:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:117:3'): tabulate_rsp_subgroups functions as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-response_subgroups.R:117:3
2. └─tern::tabulate_rsp_subgroups(...)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:138:3'): tabulate_rsp_subgroups correctly calculates column indices
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-response_subgroups.R:138:3
2. └─tern::tabulate_rsp_subgroups(...)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:183:3'): tabulate_rsp_subgroups functions as expected with valid input extreme values in OR table
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% tabulate_rsp_subgroups(df) at test-response_subgroups.R:183:3
2. └─tern::tabulate_rsp_subgroups(., df)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:200:3'): tabulate_rsp_subgroups functions as expected with NULL subgroups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-response_subgroups.R:200:3
2. └─tern::tabulate_rsp_subgroups(...)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::pagdfrow(...)
18. │ └─base::data.frame(...)
19. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables (local) .local(x, colwidths, max_width)
22. ├─base::unlist(...)
23. └─base::mapply(...)
24. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
25. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. ├─base::unlist(...)
28. └─base::vapply(...)
29. ├─formatters (local) FUN(X[[i]], ...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─base::vapply(...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
34. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:220:3'): tabulate_rsp_subgroups functions as expected when 0 obs in one arm
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-response_subgroups.R:220:3
2. └─tern::tabulate_rsp_subgroups(...)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-response_subgroups.R:254:3'): tabulate_rsp_subgroups na_str argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-response_subgroups.R:254:3
2. └─tern::tabulate_rsp_subgroups(...)
3. └─rtables::build_table(lyt_prop, df = df$prop)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-rtables_access.R:1:1'): (code run outside of `test_that()`)
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-rtables_access.R:1:1
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::pagdfrow(...)
23. │ └─base::data.frame(...)
24. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables (local) .local(x, colwidths, max_width)
27. ├─base::unlist(...)
28. └─base::mapply(...)
29. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
30. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. ├─base::unlist(...)
33. └─base::vapply(...)
34. ├─formatters (local) FUN(X[[i]], ...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─base::vapply(...)
37. └─formatters (local) FUN(X[[i]], ...)
38. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
39. └─formatters::open_font_dev(fontspec)
Error ('test-score_occurrences.R:52:3'): (code run outside of `test_that()`)
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─base::eval(...)
2. │ └─base::eval(...)
3. │ ├─... %>% prune_table() at test-score_occurrences.R:52:3
4. │ └─rtables::build_table(lyt, dfae, alt_counts_df = attr(dfae, "dfsl"))
5. │ └─rtables::update_ref_indexing(tab)
6. │ ├─formatters::make_row_df(tt)
7. │ └─rtables::make_row_df(tt)
8. │ └─rtables (local) .local(...)
9. │ ├─formatters::make_row_df(...)
10. │ └─rtables::make_row_df(...)
11. │ └─rtables (local) .local(...)
12. │ ├─formatters::make_row_df(...)
13. │ └─rtables::make_row_df(...)
14. │ └─rtables (local) .local(...)
15. │ ├─formatters::pagdfrow(...)
16. │ │ └─base::data.frame(...)
17. │ ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. │ └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. │ └─rtables (local) .local(x, colwidths, max_width)
20. │ ├─base::unlist(...)
21. │ └─base::mapply(...)
22. │ └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. │ ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. │ └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. │ ├─base::unlist(...)
26. │ └─base::vapply(...)
27. │ ├─formatters (local) FUN(X[[i]], ...)
28. │ └─formatters (local) FUN(X[[i]], ...)
29. │ └─base::vapply(...)
30. │ └─formatters (local) FUN(X[[i]], ...)
31. │ └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. │ └─formatters::open_font_dev(fontspec)
33. └─rtables::prune_table(.)
34. └─methods::is(tt, "TableRow")
Error ('test-split_cols_by_groups.R:61:3'): split_cols_by_groups manages combinations of columns
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-split_cols_by_groups.R:61:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-split_cols_by_groups.R:76:3'): split_cols_by_groups manages combinations of columns with reference
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-split_cols_by_groups.R:76:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-split_cols_by_groups.R:95:3'): split_cols_by_groups equivalent to split_cols_by when no groups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-split_cols_by_groups.R:95:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-split_cols_by_groups.R:113:3'): split_cols_by_groups equivalent to split_cols_by with ref_col but no groups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-split_cols_by_groups.R:113:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-split_cols_by_groups.R:131:3'): split_cols_by_groups manages combinations of columns with reference and alt_counts_df
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM_ANL, alt_counts_df = DM) at test-split_cols_by_groups.R:131:3
2. └─rtables::build_table(., DM_ANL, alt_counts_df = DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_ancova.R:89:3'): summarize_ancova works with healthy inputs
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(iris) at test-summarize_ancova.R:89:3
2. └─rtables::build_table(., iris)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_ancova.R:120:3'): summarize_ancova works with interaction
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(iris_new) at test-summarize_ancova.R:120:3
2. └─rtables::build_table(., iris_new)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_ancova.R:180:3'): summarize_ancova works with irregular arm levels
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(adrs_single, alt_counts_df = adsl) at test-summarize_ancova.R:180:3
2. └─rtables::build_table(., adrs_single, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_change.R:72:3'): summarize_change works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(dta_test) at test-summarize_change.R:72:3
2. └─rtables::build_table(., dta_test)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_colvars.R:25:3'): summarize_colvars works as expected without column split and default behavior
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, dta) at test-summarize_colvars.R:25:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_colvars.R:40:3'): summarize_colvars works as expected with column split
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, dta) at test-summarize_colvars.R:40:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_colvars.R:60:3'): summarize_colvars works when selecting statistics and custom formatting
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(l, dta) at test-summarize_colvars.R:60:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:82:3'): summarize_coxreg adds the univariate Cox regression layer to rtables
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:82:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:123:3'): summarize_coxreg .section_div argument works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:123:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:137:3'): summarize_coxreg works with interactions in univariate case
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:137:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:151:3'): summarize_coxreg 'at' argument works in univariate case
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:151:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:164:3'): summarize_coxreg `na_str` argument works
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:164:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:177:3'): summarize_coxreg works without treatment arm in univariate case
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:177:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:191:3'): summarize_coxreg works with numeric covariate without treatment arm in univariate case
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:191:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:207:3'): summarize_coxreg works with character covariate in univariate case when interaction = TRUE
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:207:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:235:3'): summarize_coxreg adds the multivariate Cox regression layer to rtables
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta_bladder) at test-summarize_coxreg.R:235:3
2. └─rtables::build_table(., df = dta_bladder)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::pagdfrow(...)
20. │ └─base::data.frame(...)
21. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables (local) .local(x, colwidths, max_width)
24. ├─base::unlist(...)
25. └─base::mapply(...)
26. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
27. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. ├─base::unlist(...)
30. └─base::vapply(...)
31. ├─formatters (local) FUN(X[[i]], ...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─base::vapply(...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
36. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_coxreg.R:274:3'): warning/error messages work
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-summarize_coxreg.R:274:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% build_table(df = dta_bladder)
8. └─rtables::build_table(., df = dta_bladder)
9. └─rtables::update_ref_indexing(tab)
10. ├─formatters::make_row_df(tt)
11. └─rtables::make_row_df(tt)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::make_row_df(...)
17. └─rtables::make_row_df(...)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::make_row_df(...)
23. └─rtables::make_row_df(...)
24. └─rtables (local) .local(...)
25. ├─formatters::pagdfrow(...)
26. │ └─base::data.frame(...)
27. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
28. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
29. └─rtables (local) .local(x, colwidths, max_width)
30. ├─base::unlist(...)
31. └─base::mapply(...)
32. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
33. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
34. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
35. ├─base::unlist(...)
36. └─base::vapply(...)
37. ├─formatters (local) FUN(X[[i]], ...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─base::vapply(...)
40. └─formatters (local) FUN(X[[i]], ...)
41. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
42. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_glm_count.R:413:3'): summarize_glm_count works with healthy inputs
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(anl) at test-summarize_glm_count.R:413:3
2. └─rtables::build_table(., anl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_glm_count.R:444:3'): summarize_glm_count (negative binomial) works with healthy inputs
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(anl) at test-summarize_glm_count.R:444:3
2. └─rtables::build_table(., anl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:44:3'): summarize_num_patients works as expected with healthy input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-summarize_num_patients.R:44:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:152:3'): summarize_num_patients with count_by works as expected with healthy input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-summarize_num_patients.R:152:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:202:5'): summarize_num_patients with count_by different combinations works as expected with healthy input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-summarize_num_patients.R:202:5
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:223:3'): analyze_num_patients works well for pagination
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% prune_table() at test-summarize_num_patients.R:223:3
2. ├─rtables::prune_table(.)
3. │ └─methods::is(tt, "TableRow")
4. └─rtables::build_table(., df)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:262:3'): summarize_num_patients works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adae) at test-summarize_num_patients.R:262:3
2. └─rtables::build_table(., tern_ex_adae)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_num_patients.R:291:3'): analyze_num_patients works as expected with risk difference column
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adae) at test-summarize_num_patients.R:291:3
2. └─rtables::build_table(., tern_ex_adae)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:42:3'): summarize_patients_exposure_in_cols works well with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:42:3
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:56:3'): summarize_patients_exposure_in_cols works well with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:56:3
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:81:5'): summarize_patients_exposure_in_cols returns correct column label when no variable split and only one statistic
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:81:5
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:103:3'): analyze_patients_exposure_in_cols works well with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:103:3
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:116:3'): analyze_patients_exposure_in_cols works well with custom arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:116:3
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:135:5'): analyze_patients_exposure_in_cols works with no variable split and only one statistic
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = df, alt_counts_df = adsl) at test-summarize_patients_exposure_in_cols.R:135:5
2. └─rtables::build_table(., df = df, alt_counts_df = adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-summarize_patients_exposure_in_cols.R:163:3'): patients_exposure_in_cols works with totals after the row split
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, anl_local) at test-summarize_patients_exposure_in_cols.R:163:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-survival_biomarkers_subgroups.R:82:3'): tabulate_survival_biomarkers works as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_survival_biomarkers(df, time_unit = as.character(adtte_f$AVALU[1])) at test-survival_biomarkers_subgroups.R:82:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_surv_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::make_row_df(...)
21. └─rtables::make_row_df(...)
22. └─rtables (local) .local(...)
23. ├─formatters::pagdfrow(...)
24. │ └─base::data.frame(...)
25. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables (local) .local(x, colwidths, max_width)
28. ├─base::unlist(...)
29. └─base::mapply(...)
30. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
31. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. ├─base::unlist(...)
34. └─base::vapply(...)
35. ├─formatters (local) FUN(X[[i]], ...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─base::vapply(...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
40. └─formatters::open_font_dev(fontspec)
Error ('test-survival_biomarkers_subgroups.R:102:3'): tabulate_survival_biomarkers functions as expected with NULL subgroups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_survival_biomarkers(df, time_unit = as.character(adtte_f$AVALU[1])) at test-survival_biomarkers_subgroups.R:102:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_surv_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_biomarkers_subgroups.R:126:3'): tabulate_survival_biomarkers works with only a single biomarker in the data frame
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(tabulate_survival_biomarkers(df1)) at test-survival_biomarkers_subgroups.R:126:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─tern::tabulate_survival_biomarkers(df1)
10. └─base::lapply(...)
11. └─tern (local) FUN(X[[i]], ...)
12. └─tern::h_tab_surv_one_biomarker(...)
13. └─tern::h_tab_one_biomarker(...)
14. └─rtables::build_table(lyt, df = df)
15. └─rtables::update_ref_indexing(tab)
16. ├─formatters::make_row_df(tt)
17. └─rtables::make_row_df(tt)
18. └─rtables (local) .local(...)
19. ├─formatters::make_row_df(...)
20. └─rtables::make_row_df(...)
21. └─rtables (local) .local(...)
22. ├─formatters::make_row_df(...)
23. └─rtables::make_row_df(...)
24. └─rtables (local) .local(...)
25. ├─formatters::make_row_df(...)
26. └─rtables::make_row_df(...)
27. └─rtables (local) .local(...)
28. ├─formatters::pagdfrow(...)
29. │ └─base::data.frame(...)
30. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
31. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
32. └─rtables (local) .local(x, colwidths, max_width)
33. ├─base::unlist(...)
34. └─base::mapply(...)
35. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
36. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
37. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
38. ├─base::unlist(...)
39. └─base::vapply(...)
40. ├─formatters (local) FUN(X[[i]], ...)
41. └─formatters (local) FUN(X[[i]], ...)
42. └─base::vapply(...)
43. └─formatters (local) FUN(X[[i]], ...)
44. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
45. └─formatters::open_font_dev(fontspec)
Error ('test-survival_biomarkers_subgroups.R:146:3'): tabulate_survival_biomarkers na_str argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─tern::tabulate_survival_biomarkers(...) at test-survival_biomarkers_subgroups.R:146:3
2. └─base::lapply(...)
3. └─tern (local) FUN(X[[i]], ...)
4. └─tern::h_tab_surv_one_biomarker(...)
5. └─tern::h_tab_one_biomarker(...)
6. └─rtables::build_table(lyt, df = df)
7. └─rtables::update_ref_indexing(tab)
8. ├─formatters::make_row_df(tt)
9. └─rtables::make_row_df(tt)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::make_row_df(...)
21. └─rtables::make_row_df(...)
22. └─rtables (local) .local(...)
23. ├─formatters::pagdfrow(...)
24. │ └─base::data.frame(...)
25. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
26. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables (local) .local(x, colwidths, max_width)
28. ├─base::unlist(...)
29. └─base::mapply(...)
30. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
31. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
32. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. ├─base::unlist(...)
34. └─base::vapply(...)
35. ├─formatters (local) FUN(X[[i]], ...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─base::vapply(...)
38. └─formatters (local) FUN(X[[i]], ...)
39. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
40. └─formatters::open_font_dev(fontspec)
Error ('test-survival_coxph_pairwise.R:88:3'): coxph_pairwise works with default arguments and no stratification factors
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_coxph_pairwise.R:88:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_coxph_pairwise.R:110:3'): coxph_pairwise works with customized arguments and no stratification factors
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_coxph_pairwise.R:110:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_coxph_pairwise.R:133:3'): coxph_pairwise works with default arguments and stratification factors
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_coxph_pairwise.R:133:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_coxph_pairwise.R:155:3'): coxph_pairwise works with customized arguments and stratification factors
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_coxph_pairwise.R:155:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:81:3'): a_survival_subgroups functions as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df) at test-survival_duration_subgroups.R:81:3
2. └─rtables::build_table(., df)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:98:3'): tabulate_survival_subgroups functions as expected with valid input
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:98:3
2. └─tern::tabulate_survival_subgroups(., df, time_unit = adtte$AVALU[1])
3. └─rtables::build_table(lyt_survtime, df = df$survtime)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:113:3'): tabulate_survival_subgroups functions as expected with NULL subgroups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:113:3
2. └─tern::tabulate_survival_subgroups(., df, time_unit = adtte$AVALU[1])
3. └─rtables::build_table(lyt_survtime, df = df$survtime)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::pagdfrow(...)
18. │ └─base::data.frame(...)
19. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables (local) .local(x, colwidths, max_width)
22. ├─base::unlist(...)
23. └─base::mapply(...)
24. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
25. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. ├─base::unlist(...)
28. └─base::vapply(...)
29. ├─formatters (local) FUN(X[[i]], ...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─base::vapply(...)
32. └─formatters (local) FUN(X[[i]], ...)
33. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
34. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:130:3'): tabulate_survival_subgroups functions as expected with extreme values in subgroups
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:130:3
2. └─tern::tabulate_survival_subgroups(., df, time_unit = adtte$AVALU[1])
3. └─rtables::build_table(lyt_survtime, df = df$survtime)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:145:3'): tabulate_survival_subgroups functions as expected when one arm has 0 records
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:145:3
2. └─tern::tabulate_survival_subgroups(...)
3. └─rtables::build_table(lyt_survtime, df = df$survtime)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:165:3'): tabulate_survival_subgroups works correctly with both `n_tot` and `n_tot_events` in `vars`
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:165:3
2. └─tern::tabulate_survival_subgroups(...)
3. └─rtables::build_table(lyt_hr, df = df$hr)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_duration_subgroups.R:222:3'): tabulate_survival_subgroups na_str argument works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─basic_table() %>% ... at test-survival_duration_subgroups.R:222:3
2. └─tern::tabulate_survival_subgroups(...)
3. └─rtables::build_table(lyt_survtime, df = df$survtime)
4. └─rtables::update_ref_indexing(tab)
5. ├─formatters::make_row_df(tt)
6. └─rtables::make_row_df(tt)
7. └─rtables (local) .local(...)
8. ├─formatters::make_row_df(...)
9. └─rtables::make_row_df(...)
10. └─rtables (local) .local(...)
11. ├─formatters::make_row_df(...)
12. └─rtables::make_row_df(...)
13. └─rtables (local) .local(...)
14. ├─formatters::make_row_df(...)
15. └─rtables::make_row_df(...)
16. └─rtables (local) .local(...)
17. ├─formatters::make_row_df(...)
18. └─rtables::make_row_df(...)
19. └─rtables (local) .local(...)
20. ├─formatters::pagdfrow(...)
21. │ └─base::data.frame(...)
22. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
23. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables (local) .local(x, colwidths, max_width)
25. ├─base::unlist(...)
26. └─base::mapply(...)
27. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
28. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
29. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. ├─base::unlist(...)
31. └─base::vapply(...)
32. ├─formatters (local) FUN(X[[i]], ...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─base::vapply(...)
35. └─formatters (local) FUN(X[[i]], ...)
36. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
37. └─formatters::open_font_dev(fontspec)
Error ('test-survival_time.R:94:3'): surv_time works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_time.R:94:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_time.R:117:3'): surv_time works with customized arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_time.R:117:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_time.R:144:3'): surv_time works with referential footnotes
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_time.R:144:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_timepoint.R:72:3'): surv_timepoint works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_timepoint.R:72:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_timepoint.R:97:3'): surv_timepoint works with customized arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_timepoint.R:97:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_timepoint.R:173:3'): surv_timepoint for survival diff works with default arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_timepoint.R:173:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_timepoint.R:199:3'): surv_timepoint for survival diff works with customized arguments
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = adtte_f) at test-survival_timepoint.R:199:3
2. └─rtables::build_table(., df = adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-survival_timepoint.R:225:3'): surv_timepoint works with method = both
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-survival_timepoint.R:225:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─... %>% build_table(df = adtte_f)
10. └─rtables::build_table(., df = adtte_f)
11. └─rtables::update_ref_indexing(tab)
12. ├─formatters::make_row_df(tt)
13. └─rtables::make_row_df(tt)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::make_row_df(...)
19. └─rtables::make_row_df(...)
20. └─rtables (local) .local(...)
21. ├─formatters::pagdfrow(...)
22. │ └─base::data.frame(...)
23. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
24. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
25. └─rtables (local) .local(x, colwidths, max_width)
26. ├─base::unlist(...)
27. └─base::mapply(...)
28. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
29. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
30. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
31. ├─base::unlist(...)
32. └─base::vapply(...)
33. ├─formatters (local) FUN(X[[i]], ...)
34. └─formatters (local) FUN(X[[i]], ...)
35. └─base::vapply(...)
36. └─formatters (local) FUN(X[[i]], ...)
37. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
38. └─formatters::open_font_dev(fontspec)
Error ('test-test_proportion_diff.R:124:3'): test_proportion_diff returns right result
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta) at test-test_proportion_diff.R:124:3
2. └─rtables::build_table(., df = dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-test_proportion_diff.R:142:3'): test_proportion_diff edge case: all responder by chisq
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta) at test-test_proportion_diff.R:142:3
2. └─rtables::build_table(., df = dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-test_proportion_diff.R:160:3'): test_proportion_diff edge case: all responder by schouten
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta) at test-test_proportion_diff.R:160:3
2. └─rtables::build_table(., df = dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-test_proportion_diff.R:178:3'): test_proportion_diff edge case: all responder by fisher
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta) at test-test_proportion_diff.R:178:3
2. └─rtables::build_table(., df = dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-test_proportion_diff.R:199:3'): test_proportion_diff edge case: all responder by CMH
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = dta) at test-test_proportion_diff.R:199:3
2. └─rtables::build_table(., df = dta)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-utils_ggplot.R:15:3'): rtable2gg works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = dta) at test-utils_ggplot.R:15:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-utils_ggplot.R:50:3'): rtable2gg works with multiple column splits
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, df = dta2) at test-utils_ggplot.R:50:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::pagdfrow(...)
10. │ └─base::data.frame(...)
11. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
12. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables (local) .local(x, colwidths, max_width)
14. ├─base::unlist(...)
15. └─base::mapply(...)
16. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
17. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
18. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. ├─base::unlist(...)
20. └─base::vapply(...)
21. ├─formatters (local) FUN(X[[i]], ...)
22. └─formatters (local) FUN(X[[i]], ...)
23. └─base::vapply(...)
24. └─formatters (local) FUN(X[[i]], ...)
25. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
26. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:2:3'): to_string_matrix works correctly
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% prune_table() at test-utils_rtables.R:2:3
2. ├─rtables::prune_table(.)
3. │ └─methods::is(tt, "TableRow")
4. └─rtables::build_table(., DM)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::make_row_df(...)
19. └─rtables::make_row_df(...)
20. └─rtables (local) .local(...)
21. ├─formatters::make_row_df(...)
22. └─rtables::make_row_df(...)
23. └─rtables (local) .local(...)
24. ├─formatters::pagdfrow(...)
25. │ └─base::data.frame(...)
26. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
27. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
28. └─rtables (local) .local(x, colwidths, max_width)
29. ├─base::unlist(...)
30. └─base::mapply(...)
31. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
32. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
33. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
34. ├─base::unlist(...)
35. └─base::vapply(...)
36. ├─formatters (local) FUN(X[[i]], ...)
37. └─formatters (local) FUN(X[[i]], ...)
38. └─base::vapply(...)
39. └─formatters (local) FUN(X[[i]], ...)
40. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
41. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:98:3'): add_rowcounts works with one row split
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-utils_rtables.R:98:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:108:3'): add_rowcounts works with multiple column and row splits
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(DM) at test-utils_rtables.R:108:3
2. └─rtables::build_table(., DM)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:123:3'): add_rowcounts works with pruning
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% prune_table() at test-utils_rtables.R:123:3
2. ├─rtables::prune_table(.)
3. │ └─methods::is(tt, "TableRow")
4. └─rtables::build_table(., DM)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::pagdfrow(...)
19. │ └─base::data.frame(...)
20. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables (local) .local(x, colwidths, max_width)
23. ├─base::unlist(...)
24. └─base::mapply(...)
25. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
26. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. ├─base::unlist(...)
29. └─base::vapply(...)
30. ├─formatters (local) FUN(X[[i]], ...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─base::vapply(...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
35. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:150:3'): add_rowcounts works with alt_counts = TRUE
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% prune_table() at test-utils_rtables.R:150:3
2. ├─rtables::prune_table(.)
3. │ └─methods::is(tt, "TableRow")
4. └─rtables::build_table(., DM, alt_counts_df = DM_alt)
5. └─rtables::update_ref_indexing(tab)
6. ├─formatters::make_row_df(tt)
7. └─rtables::make_row_df(tt)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::make_row_df(...)
16. └─rtables::make_row_df(...)
17. └─rtables (local) .local(...)
18. ├─formatters::pagdfrow(...)
19. │ └─base::data.frame(...)
20. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
21. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
22. └─rtables (local) .local(x, colwidths, max_width)
23. ├─base::unlist(...)
24. └─base::mapply(...)
25. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
26. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
27. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
28. ├─base::unlist(...)
29. └─base::vapply(...)
30. ├─formatters (local) FUN(X[[i]], ...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─base::vapply(...)
33. └─formatters (local) FUN(X[[i]], ...)
34. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
35. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:181:3'): as.rtable.data.frame works correctly
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'toString': argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─testthat::expect_snapshot(res) at test-utils_rtables.R:181:3
2. └─rlang::cnd_signal(state$error)
Error ('test-utils_rtables.R:246:3'): append_varlabels works as expected
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, DM) at test-utils_rtables.R:246:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:258:3'): append_varlabels correctly concatenates multiple variable labels
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. └─rtables::build_table(lyt, DM) at test-utils_rtables.R:258:3
2. └─rtables::update_ref_indexing(tab)
3. ├─formatters::make_row_df(tt)
4. └─rtables::make_row_df(tt)
5. └─rtables (local) .local(...)
6. ├─formatters::make_row_df(...)
7. └─rtables::make_row_df(...)
8. └─rtables (local) .local(...)
9. ├─formatters::make_row_df(...)
10. └─rtables::make_row_df(...)
11. └─rtables (local) .local(...)
12. ├─formatters::make_row_df(...)
13. └─rtables::make_row_df(...)
14. └─rtables (local) .local(...)
15. ├─formatters::pagdfrow(...)
16. │ └─base::data.frame(...)
17. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
18. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables (local) .local(x, colwidths, max_width)
20. ├─base::unlist(...)
21. └─base::mapply(...)
22. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
23. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
24. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. ├─base::unlist(...)
26. └─base::vapply(...)
27. ├─formatters (local) FUN(X[[i]], ...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─base::vapply(...)
30. └─formatters (local) FUN(X[[i]], ...)
31. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
32. └─formatters::open_font_dev(fontspec)
Error ('test-utils_rtables.R:269:3'): default na_str works properly
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tmp) at test-utils_rtables.R:269:3
2. └─rtables::build_table(., tmp)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::make_row_df(...)
14. └─rtables::make_row_df(...)
15. └─rtables (local) .local(...)
16. ├─formatters::pagdfrow(...)
17. │ └─base::data.frame(...)
18. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
19. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
20. └─rtables (local) .local(x, colwidths, max_width)
21. ├─base::unlist(...)
22. └─base::mapply(...)
23. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
24. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
25. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
26. ├─base::unlist(...)
27. └─base::vapply(...)
28. ├─formatters (local) FUN(X[[i]], ...)
29. └─formatters (local) FUN(X[[i]], ...)
30. └─base::vapply(...)
31. └─formatters (local) FUN(X[[i]], ...)
32. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
33. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:11:3'): analyze_vars works as expected with ref_group_position last split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = tern_ex_adsl) at test-utils_split_fun.R:11:3
2. └─rtables::build_table(., df = tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:31:3'): compare_vars works as expected with ref_group first split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(df = tern_ex_adsl) at test-utils_split_fun.R:31:3
2. └─rtables::build_table(., df = tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:43:3'): summarize_ancova works as expected with ref_group position split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(tern_ex_adsl) at test-utils_split_fun.R:43:3
2. └─rtables::build_table(., tern_ex_adsl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:64:3'): binary endpoint layouts work as expected with ref_group_position last split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(adrs_f) at test-utils_split_fun.R:64:3
2. └─rtables::build_table(., adrs_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:85:3'): time to event layouts works as expected with ref_group_position last split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(adtte_f) at test-utils_split_fun.R:85:3
2. └─rtables::build_table(., adtte_f)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::make_row_df(...)
11. └─rtables::make_row_df(...)
12. └─rtables (local) .local(...)
13. ├─formatters::pagdfrow(...)
14. │ └─base::data.frame(...)
15. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
16. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
17. └─rtables (local) .local(x, colwidths, max_width)
18. ├─base::unlist(...)
19. └─base::mapply(...)
20. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
21. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
22. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
23. ├─base::unlist(...)
24. └─base::vapply(...)
25. ├─formatters (local) FUN(X[[i]], ...)
26. └─formatters (local) FUN(X[[i]], ...)
27. └─base::vapply(...)
28. └─formatters (local) FUN(X[[i]], ...)
29. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
30. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:108:3'): summarize_ancova works as expected with ref_group_position last split fun
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(anl) at test-utils_split_fun.R:108:3
2. └─rtables::build_table(., anl)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
Error ('test-utils_split_fun.R:128:3'): level_order works for integerish and characters
Error in `nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)`: argument "fontspec" is missing, with no default
Backtrace:
▆
1. ├─... %>% build_table(iris) at test-utils_split_fun.R:128:3
2. └─rtables::build_table(., iris)
3. └─rtables::update_ref_indexing(tab)
4. ├─formatters::make_row_df(tt)
5. └─rtables::make_row_df(tt)
6. └─rtables (local) .local(...)
7. ├─formatters::make_row_df(...)
8. └─rtables::make_row_df(...)
9. └─rtables (local) .local(...)
10. ├─formatters::pagdfrow(...)
11. │ └─base::data.frame(...)
12. ├─formatters::nlines(tt, colwidths = colwidths, max_width = max_width)
13. └─rtables::nlines(tt, colwidths = colwidths, max_width = max_width)
14. └─rtables (local) .local(x, colwidths, max_width)
15. ├─base::unlist(...)
16. └─base::mapply(...)
17. └─rtables (local) `<fn>`(s = dots[[1L]][[1L]], w = dots[[2L]][[1L]])
18. ├─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
19. └─formatters::nlines(strsplit(s, "\n", fixed = TRUE), max_width = w)
20. ├─base::unlist(...)
21. └─base::vapply(...)
22. ├─formatters (local) FUN(X[[i]], ...)
23. └─formatters (local) FUN(X[[i]], ...)
24. └─base::vapply(...)
25. └─formatters (local) FUN(X[[i]], ...)
26. └─formatters::wrap_txt(xi, max_width, fontspec = fontspec)
27. └─formatters::open_font_dev(fontspec)
[ FAIL 183 | WARN 0 | SKIP 482 | PASS 887 ]
══ Terminated early ════════════════════════════════════════════════════════════
Deleting unused snapshots:
• g_forest/g_forest.new.svg
• g_forest/g_forest.svg
• g_forest/g_forest_custom_1.new.svg
• g_forest/g_forest_custom_1.svg
• g_forest/g_forest_custom_2.new.svg
• g_forest/g_forest_custom_2.svg
• g_forest/g_forest_custom_3.new.svg
• g_forest/g_forest_custom_3.svg
• g_forest/g_forest_or.new.svg
• g_forest/g_forest_or.svg
• g_forest/g_forest_plot_only.new.svg
• g_forest/g_forest_plot_only.svg
• g_forest/g_forest_table_only.new.svg
• g_forest/g_forest_table_only.svg
• g_km/g_km_crop_ylim_failure.svg
• g_km/g_km_custom_ylim.svg
• g_km/g_km_table_only.svg
• g_lineplot/g_lineplot_facets.svg
• utils_ggplot/df2gg_cw.svg
• utils_ggplot/df2gg_fs.svg
• utils_ggplot/rtable2gg_colsplits.svg
• utils_ggplot/rtable2gg_cw.svg
• utils_ggplot/rtable2gg_default.svg
• utils_ggplot/rtable2gg_fs.svg
• utils_ggplot/rtable2gg_lblpad.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘missing_values.Rmd’ using rmarkdown
Quitting from lines 43-63 [unnamed-chunk-3] (missing_values.Rmd)
Error: processing vignette 'missing_values.Rmd' failed with diagnostics:
argument "fontspec" is missing, with no default
--- failed re-building ‘missing_values.Rmd’
--- re-building ‘tables.Rmd’ using rmarkdown
Quitting from lines 128-141 [unnamed-chunk-4] (tables.Rmd)
Error: processing vignette 'tables.Rmd' failed with diagnostics:
argument "fontspec" is missing, with no default
--- failed re-building ‘tables.Rmd’
--- re-building ‘tern.Rmd’ using rmarkdown
Quitting from lines 116-122 [unnamed-chunk-5] (tern.Rmd)
Error: processing vignette 'tern.Rmd' failed with diagnostics:
argument "fontspec" is missing, with no default
--- failed re-building ‘tern.Rmd’
--- re-building ‘tern_formats.Rmd’ using rmarkdown
Quitting from lines 56-76 [unnamed-chunk-3] (tern_formats.Rmd)
Error: processing vignette 'tern_formats.Rmd' failed with diagnostics:
argument "fontspec" is missing, with no default
--- failed re-building ‘tern_formats.Rmd’
SUMMARY: processing the following files failed:
‘missing_values.Rmd’ ‘tables.Rmd’ ‘tern.Rmd’ ‘tern_formats.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.5
Check: package dependencies
Result: NOTE
Imports includes 21 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.9.5
Check: installed package size
Result: NOTE
installed size is 8.5Mb
sub-directories of 1Mb or more:
doc 4.5Mb
help 2.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-x86_64
Version: 0.9.4
Check: installed package size
Result: NOTE
installed size is 8.5Mb
sub-directories of 1Mb or more:
doc 4.5Mb
help 2.7Mb
Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 0.9.5
Check: package dependencies
Result: ERROR
Package required and available but unsuitable version: ‘rtables’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64