Last updated on 2026-01-05 06:50:05 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 39.52 | 817.70 | 857.22 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 24.31 | 547.44 | 571.75 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 65.00 | 1323.65 | 1388.65 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 64.00 | 1321.51 | 1385.51 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 38.00 | 583.00 | 621.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 54.11 | 745.73 | 799.84 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.75 | 733.56 | 770.31 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 540.00 | 577.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 147.00 | 155.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 710.00 | 735.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 52.00 | 688.00 | 740.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [109s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-05 17:04:06.305605: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.305861: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.309051: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.315153: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:04:06.326801: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.326944: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.329252: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.335008: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:04:06.341267: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.341401: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.346566: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.361011: embedding
> test_pipeop_isomap.R: 2026-01-05 17:04:06.361387: DONE
> test_pipeop_isomap.R: 2026-01-05 17:04:06.367077: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.367199: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.371718: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.386354: embedding
> test_pipeop_isomap.R: 2026-01-05 17:04:06.386818: DONE
> test_pipeop_isomap.R: 2026-01-05 17:04:06.414034: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.414148: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.418552: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.451819: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:04:06.461708: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.461926: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.471046: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.549417: embedding
> test_pipeop_isomap.R: 2026-01-05 17:04:06.550706: DONE
> test_pipeop_isomap.R: 2026-01-05 17:04:06.584268: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.584429: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.586881: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.593148: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:04:06.607867: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.608077: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.612692: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.627581: embedding
> test_pipeop_isomap.R: 2026-01-05 17:04:06.627984: DONE
> test_pipeop_isomap.R: 2026-01-05 17:04:06.662429: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.662583: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.665011: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.671035: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:04:06.682907: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.683091: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.688476: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.703686: embedding
> test_pipeop_isomap.R: 2026-01-05 17:04:06.704182: DONE
> test_pipeop_isomap.R: 2026-01-05 17:04:06.721169: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.721305: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.723533: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.729443: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:04:06.739416: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.739596: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.749056: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.762692: embedding
> test_pipeop_isomap.R: 2026-01-05 17:04:06.763087: DONE
> test_pipeop_isomap.R: 2026-01-05 17:04:06.779321: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.779444: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.781841: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.78788: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:04:06.798752: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.798915: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.803168: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.818101: embedding
> test_pipeop_isomap.R: 2026-01-05 17:04:06.818521: DONE
> test_pipeop_isomap.R: 2026-01-05 17:04:06.835935: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.836063: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.838356: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.8444: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:04:06.855479: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.855649: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.86578: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.881382: embedding
> test_pipeop_isomap.R: 2026-01-05 17:04:06.881813: DONE
> test_pipeop_isomap.R: 2026-01-05 17:04:06.905119: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.905308: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.908151: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.914569: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:04:06.934878: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.935111: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.93735: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.942585: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:04:06.947322: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:04:06.947406: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:04:06.949528: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:04:06.954719: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [328s/408s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-04 23:08:58.434646: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:08:58.435206: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:08:58.470831: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:08:58.528589: Classical Scaling
> test_pipeop_isomap.R: 2026-01-04 23:08:58.620966: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:08:58.621245: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:08:58.649886: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:08:58.680099: Classical Scaling
> test_pipeop_isomap.R: 2026-01-04 23:08:58.759443: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-04 23:08:58.759885: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:08:58.805484: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:08:58.914038: embedding
> test_pipeop_isomap.R: 2026-01-04 23:08:58.915179: DONE
> test_pipeop_isomap.R: 2026-01-04 23:08:58.976385: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-04 23:08:58.976716: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:08:59.02273: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:08:59.111323: embedding
> test_pipeop_isomap.R: 2026-01-04 23:08:59.127339: DONE
> test_pipeop_isomap.R: 2026-01-04 23:08:59.282182: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:08:59.282482: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:08:59.318494: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:08:59.588479: Classical Scaling
> test_pipeop_isomap.R: 2026-01-04 23:08:59.672402: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-04 23:08:59.672919: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:08:59.755028: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:00.358061: embedding
> test_pipeop_isomap.R: 2026-01-04 23:09:00.398582: DONE
> test_pipeop_isomap.R: 2026-01-04 23:09:00.785391: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:09:00.785678: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:00.827134: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:00.873502: Classical Scaling
> test_pipeop_isomap.R: 2026-01-04 23:09:00.971031: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-04 23:09:00.971451: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:01.002441: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:01.122585: embedding
> test_pipeop_isomap.R: 2026-01-04 23:09:01.1237: DONE
> test_pipeop_isomap.R: 2026-01-04 23:09:01.408693: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:09:01.408982: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:01.416307: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:01.489782: Classical Scaling
> test_pipeop_isomap.R: 2026-01-04 23:09:01.574285: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-04 23:09:01.574724: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:01.618663: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:01.689085: embedding
> test_pipeop_isomap.R: 2026-01-04 23:09:01.727331: DONE
> test_pipeop_isomap.R: 2026-01-04 23:09:01.882211: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:09:01.882498: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:01.906521: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:01.955549: Classical Scaling
> test_pipeop_isomap.R: 2026-01-04 23:09:02.053182: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-04 23:09:02.053666: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:02.115575: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:02.204851: embedding
> test_pipeop_isomap.R: 2026-01-04 23:09:02.205975: DONE
> test_pipeop_isomap.R: 2026-01-04 23:09:02.380689: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:09:02.380969: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:02.413069: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:02.447719: Classical Scaling
> test_pipeop_isomap.R: 2026-01-04 23:09:02.54729: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-04 23:09:02.549232: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:02.579373: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:02.689002: embedding
> test_pipeop_isomap.R: 2026-01-04 23:09:02.69015: DONE
> test_pipeop_isomap.R: 2026-01-04 23:09:02.84136: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:09:02.841663: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:02.849096: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:02.91371: Classical Scaling
> test_pipeop_isomap.R: 2026-01-04 23:09:02.976436: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-04 23:09:02.976848: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:03.039941: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:03.150357: embedding
> test_pipeop_isomap.R: 2026-01-04 23:09:03.152719: DONE
> test_pipeop_isomap.R: 2026-01-04 23:09:03.351502: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:09:03.351784: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:03.382293: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:03.418054: Classical Scaling
> test_pipeop_isomap.R: 2026-01-04 23:09:03.580866: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:09:03.581282: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:03.606359: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:03.657039: Classical Scaling
> test_pipeop_isomap.R: 2026-01-04 23:09:03.71333: Isomap START
> test_pipeop_isomap.R: 2026-01-04 23:09:03.713693: constructing knn graph
> test_pipeop_isomap.R: 2026-01-04 23:09:03.726248: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-04 23:09:03.776406: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [298s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-29 23:58:08.39592: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.397001: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.415444: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.432775: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:08.48134: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.482003: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.493394: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.509237: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:08.541266: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.541932: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.557638: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.59562: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:08.597146: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:08.626392: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.626867: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.642581: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.696343: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:08.716096: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:08.84862: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.84923: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.870996: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.986946: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:09.040497: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.041379: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.080702: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.286405: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:09.29159: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:09.523103: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.523722: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.534337: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.557069: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:09.627172: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.62803: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.650044: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.694663: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:09.695734: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:09.91991: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.920563: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.932632: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.954441: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.031702: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.032621: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.055415: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.105656: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.107462: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:10.232661: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.233306: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.245937: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.273066: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.348642: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.349526: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.388423: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.437995: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.439157: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:10.560174: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.560797: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.571369: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.593617: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.668105: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.669004: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.687689: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.737882: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.739425: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:10.829189: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.829685: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.837691: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.858411: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.933407: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.934289: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.952716: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.995014: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.996929: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:11.142308: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:11.143: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:11.170818: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:11.194719: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:11.315518: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:11.316138: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:11.328614: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:11.351195: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:11.387378: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:11.38798: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:11.400866: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:11.419185: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64