Last updated on 2026-06-05 14:49:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.5 | 8.18 | 101.66 | 109.84 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.0.5 | 5.68 | 254.69 | 260.37 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.5 | 14.00 | 632.32 | 646.32 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.0.6 | 13.00 | 481.67 | 494.67 | OK | |
| r-devel-windows-x86_64 | 0.0.5 | 14.00 | 422.00 | 436.00 | OK | |
| r-patched-linux-x86_64 | 0.0.5 | 5.87 | 356.43 | 362.30 | OK | |
| r-release-linux-x86_64 | 0.0.5 | 8.32 | 355.67 | 363.99 | OK | |
| r-release-macos-arm64 | 0.0.6 | 2.00 | 36.00 | 38.00 | OK | |
| r-release-macos-x86_64 | 0.0.6 | 6.00 | 90.00 | 96.00 | OK | |
| r-release-windows-x86_64 | 0.0.5 | 11.00 | 404.00 | 415.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.6 | 2.00 | 31.00 | 33.00 | OK | |
| r-oldrel-macos-x86_64 | 0.0.6 | 6.00 | 142.00 | 148.00 | OK | |
| r-oldrel-windows-x86_64 | 0.0.5 | 18.00 | 507.00 | 525.00 | OK |
Version: 0.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ivolcano.qmd’ using html
<1b>[31m
processing file: ivolcano.qmd
<1b>[39m<1b>[31mError in `curl::curl_fetch_memory()`:
! Timeout was reached [eutils.ncbi.nlm.nih.gov]:
Resolving timed out after 10002 milliseconds
Backtrace:
▆
1. ├─fanyi::gene_summary(top_eg)
2. │ └─fanyi:::gene_summary_ncbi(entrez)
3. │ └─fanyi:::.get_entrez_summary(newitem)
4. │ └─rentrez::entrez_summary(db = "gene", id = entrez)
5. │ ├─base::do.call(make_entrez_query, args)
6. │ └─rentrez (local) `<fn>`(...)
7. │ └─httr::GET(uri, query = args, config = config)
8. │ └─httr:::request_perform(req, hu$handle$handle)
9. │ ├─httr:::request_fetch(req$output, req$url, handle)
10. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
11. │ └─curl::curl_fetch_memory(url, handle = handle)
12. └─curl:::raise_libcurl_error(...)
<1b>[39m<1b>[31m
Quitting from ivolcano.qmd:105-125 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [eutils.ncbi.nlm.nih.gov]:
Resolving timed out after 10002 milliseconds
---
Backtrace:
▆
1. ├─fanyi::gene_summary(top_eg)
2. │ └─fanyi:::gene_summary_ncbi(entrez)
3. │ └─fanyi:::.get_entrez_summary(newitem)
4. │ └─rentrez::entrez_summary(db = "gene", id = entrez)
5. │ ├─base::do.call(make_entrez_query, args)
6. │ └─rentrez (local) `<fn>`(...)
7. │ └─httr::GET(uri, query = args, config = config)
8. │ └─httr:::request_perform(req, hu$handle$handle)
9. │ ├─httr:::request_fetch(req$output, req$url, handle)
10. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
11. │ └─curl::curl_fetch_memory(url, handle = handle)
12. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Execution halted
<1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m
Error: processing vignette 'ivolcano.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
-----------------------------
processing file: ivolcano.qmd
<1b>[31mError in `curl::curl_fetch_memory()`:<1b>[39m
! Timeout was reached [eutils.ncbi.nlm.nih.gov]:
Resolving timed out after 10002 milliseconds
Backtrace:
▆
1. ├─fanyi::gene_summary(top_eg)
2. │ └─fanyi:::gene_summary_ncbi(entrez)
3. │ └─fanyi:::.get_entrez_summary(newitem)
4. │ └─rentrez::entrez_summary(db = "gene", id = entrez)
5. │ ├─base::do.call(make_entrez_query, args)
6. │ └─rentrez (local) `<fn>`(...)
7. │ └─httr::GET(uri, query = args, config = config)
8. │ └─httr:::request_perform(req, hu$handle$handle)
9. │ ├─httr:::request_fetch(req$output, req$url, handle)
10. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
11. │ └─curl::curl_fetch_memory(url, handle = handle)
12. └─curl:::raise_libcurl_error(...)
Quitting from ivolcano.qmd:105-125 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [eutils.ncbi.nlm.nih.gov]:
Resolving timed out after 10002 milliseconds
---
Backtrace:
▆
1. ├─fanyi::gene_summary(top_eg)
2. │ └─fanyi:::gene_summary_ncbi(entrez)
3. │ └─fanyi:::.get_entrez_summary(newitem)
4. │ └─rentrez::entrez_summary(db = "gene", id = entrez)
5. │ ├─base::do.call(make_entrez_query, args)
6. │ └─rentrez (local) `<fn>`(...)
7. │ └─httr::GET(uri, query = args, config = config)
8. │ └─httr:::request_perform(req, hu$handle$handle)
9. │ ├─httr:::request_fetch(req$output, req$url, handle)
10. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
11. │ └─curl::curl_fetch_memory(url, handle = handle)
12. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Execution halted
<1b>[33mWARN: Error encountered when rendering files<1b>[39m
Caused by error in `processx::run()`:
! System command 'quarto' failed
--- failed re-building ‘ivolcano.qmd’
SUMMARY: processing the following file failed:
‘ivolcano.qmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang